Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

26318404 .. 26318601

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTCGCTTGCAAAACCATCTCTGTTTGACTATCCTAAACCTTGTCCTGTGCCAGTGGAGTCTGAGCCTTCTTTTGCTATTTTAACCAACCCATCTAGGGTGCTGCCAGCCCAAGAAAAATACATCTGGTTTTTGGAAGGAAGTAGATATCTTCCTATCAGGCCGTCGTCTACGGATTTTGTATTACTGAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

6.15

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_C	PF18004	19 - 65	3.5e-11	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	25, 100
BceAI	ACGGC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	96, 196
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	54, 179
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	55, 180
BsrI	ACTGG	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	9, 108
BstDEI	CTNAG	2 cut(s)	63, 188
BstV1I	GCAGC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	9, 108
CviJI	RGCY	3 cut(s)	67, 110, 163
CviKI_1	RGCY	3 cut(s)	67, 110, 163
DdeI	CTNAG	2 cut(s)	63, 188
Eco32I	GATATC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	2 cut(s)	96, 196
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	78, 131
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	63, 188
LpnPI	CCDG	5 cut(s)	60, 66, 112, 120, 145
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	96, 196
MboII	GAAGA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	68
SetI	ASST	1 cut(s)	43
SgeI	CNNG	9 cut(s)	20, 54, 59, 65, 108, 119, 125, 139, 172
SspMI	CTAG	2 cut(s)	96, 196
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	96, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.