Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

17306120 .. 17308463

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTTCTTCACCAAGCTCCAATGTTCACCTGTACTACTCCCCTCTCACGAAACCCTAACCGACTCACCGCCACAATCTCCATGGCCGCCGACCGCGCCGCCGTCCCGTCTCCGCCGCAGCGGAAAAGGACCGTGTCCGCTCTCGAAGCCCGAATCTCCCTCGTCGCCGCTCTCGCCGCCCAAGCCTCCACCGTCTCGCAGCGACTTTTGCTCGATTTGGCCACCGAGACGGCCAAGTACGTCTTCCCCAAGCAGTTTGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGTTCCGGACCTGGAAACGGTGAAGTTCAAAGTGTTGAGTAGGAGAGACCAGTATGAGATTAGAGAAGTTGAGCCTTACTTTATAGCAGAGGTGACAATGCCTGGAAAGAGTGGTTTTGATTTGAATGGTGCTTCGCAATCGTTCAATGTCTTAGCTGAATACCTGTTTGGTAAGAATACCACAAAGGAGAAAATGGAGATGACAACACCGGTTTTTACCCGTAAAGCTCAATCTGACGGAGAGAAAATGGAAATGACAACTCCAGTGATAACAAAGAGGGTGGAAAATGAAGATAAGTGGCAGATGTCCTTTGTCATGCCCTCAAAATACGGTGCCAATTTGCCATTGCCTAAAGATCCATCTGTAAAGGTCAAAGAGGTTCCAAAGAAATTAGTTGCAGTTGTTGCCTTTTCTGGTTTTGTCACTGATGAGGAAATTAAGCAACGGGAATCCAAGTTAAGGGAAGCTTTGAAAGATGATAGACAGTTCCAAGTGAAGCAGGGCACTTCAGTGGAAGTTGCACAGTATAACCCACCATTTACGCTTCCATTTCAACGGCGTAATGAGATCAGTCTGGAAGTTGAAAGTAAAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

HEAT_2 PC_rep

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

8.76

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	101 - 171	4.7e-16	SOUL heme-binding protein
SOUL	PF04832	172 - 289	2.2e-33	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	2 cut(s)	140, 170
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	3 cut(s)	84, 219, 231
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	34, 239
AfiI	CCNNNNNNNGG	2 cut(s)	307, 750
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	6 cut(s)	319, 415, 436, 763, 845, 875
AjnI	CCWGG	2 cut(s)	300, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 441, 473
AleI	CACNNNNGTG	1 cut(s)	800
AluBI	AGCT	5 cut(s)	17, 281, 446, 518, 758
AluI	AGCT	5 cut(s)	17, 281, 446, 518, 758
Alw26I	GTCTC	4 cut(s)	114, 199, 221, 330
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	3 cut(s)	84, 219, 231
ApeKI	GCWGC	2 cut(s)	118, 199
AsiGI	ACCGGT	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	129, 298
AsuHPI	GGTGA	4 cut(s)	19, 58, 322, 394
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	129, 298
BaeGI	GKGCMC	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	130, 211
BccI	CCATC	1 cut(s)	658
BceAI	ACGGC	3 cut(s)	86, 246, 863
BciT130I	CCWGG	2 cut(s)	302, 393
BcoDI	GTCTC	4 cut(s)	114, 199, 221, 330
BisI	GCNGC	7 cut(s)	87, 99, 116, 119, 168, 177, 200
BlsI	GCNGC	7 cut(s)	88, 100, 117, 120, 169, 178, 201
Bme1390I	CCNGG	2 cut(s)	302, 393
Bme18I	GGWCC	2 cut(s)	129, 298
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	129, 298
BmiI	GGNNCC	2 cut(s)	625, 672
BmrFI	CCNGG	2 cut(s)	302, 393
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	295, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 750
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	340, 554
Bse3DI	GCAATG	1 cut(s)	635
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	302, 393
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	307, 750
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	340, 554
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	130, 211
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	86, 221, 233
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	296, 500
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	307, 750
BsmAI	GTCTC	4 cut(s)	114, 199, 221, 330
BsmBI	CGTCTC	3 cut(s)	114, 199, 221
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	86, 221, 233
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	646, 858
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	3 cut(s)	86, 221, 233
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	625, 672
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	330
BsrBI	CCGCTC	2 cut(s)	140, 170
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	340, 554
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	646, 858
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	302, 393
Bst4CI	ACNGT	6 cut(s)	133, 193, 310, 623, 777, 816
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstDEI	CTNAG	1 cut(s)	442
BstDSI	CCRYGG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	649, 861
BstMAI	GTCTC	4 cut(s)	114, 199, 221, 330
BstMBI	GATC	2 cut(s)	646, 858
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 146, 173, 176, 182, 208, 695
BstNI	CCWGG	2 cut(s)	302, 393
BstSCI	CCNGG	2 cut(s)	300, 391
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	130, 211
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	86, 221, 233
BtgI	CCRYGG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	561, 714, 807
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	129, 298
Csp6I	GTAC	2 cut(s)	33, 238
CspAI	ACCGGT	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	3 cut(s)	82, 286, 607
CviQI	GTAC	2 cut(s)	33, 238
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	2 cut(s)	648, 860
DpnII	GATC	2 cut(s)	646, 858
EaeI	YGGCCR	3 cut(s)	84, 219, 231
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	129, 298
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	300, 391
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	3 cut(s)	114, 199, 221
FaeI	CATG	3 cut(s)	85, 289, 610
FaiI	YATR	6 cut(s)	83, 287, 345, 374, 608, 819
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 742, 774
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	81, 285, 606
Fnu4HI	GCNGC	7 cut(s)	87, 99, 116, 119, 168, 177, 200
Fsp4HI	GCNGC	7 cut(s)	87, 99, 116, 119, 168, 177, 200
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	7 cut(s)	87, 99, 116, 119, 168, 177, 200
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	86, 221, 233
HapII	CCGG	2 cut(s)	296, 500
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	85, 289, 610
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	4 cut(s)	63, 153, 268, 740
HpaII	CCGG	2 cut(s)	296, 500
HphI	GGTGA	4 cut(s)	19, 58, 322, 394
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	267, 526
Hpy188III	TCNNGA	5 cut(s)	48, 143, 272, 296, 866
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	6 cut(s)	133, 193, 310, 623, 777, 816
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	689, 812
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 146, 173, 176, 182, 208, 695
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	85, 289, 610
HspAI	GCGC	1 cut(s)	96
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	646, 858
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	130, 211
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	382, 712
MalI	GATC	2 cut(s)	648, 860
MbiI	CCGCTC	2 cut(s)	140, 170
MboI	GATC	2 cut(s)	646, 858
MboII	GAAGA	2 cut(s)	235, 593
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	3 cut(s)	628, 680, 726
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	57, 262
Mox20I	TGGCCA	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	2 cut(s)	729, 749
MslI	CAYNNNNRTG	1 cut(s)	800
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	2 cut(s)	296, 500
MspR9I	CCNGG	2 cut(s)	302, 393
MvaI	CCWGG	2 cut(s)	302, 393
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	7 cut(s)	95, 146, 173, 176, 182, 208, 695
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	646, 858
NlaIII	CATG	3 cut(s)	85, 289, 610
NlaIV	GGNNCC	2 cut(s)	625, 672
NmuCI	GTSAC	2 cut(s)	382, 712
OliI	CACNNNNGTG	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	153, 740
PflFI	GACNNNGTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	7 cut(s)	88, 100, 117, 120, 169, 178, 201
PleI	GAGTC	2 cut(s)	57, 262
PpsI	GAGTC	2 cut(s)	57, 262
Psp6I	CCWGG	2 cut(s)	300, 391
PspGI	CCWGG	2 cut(s)	300, 391
PspN4I	GGNNCC	2 cut(s)	625, 672
PspPI	GGNCC	2 cut(s)	129, 298
PsuI	RGATCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	34, 239
RsaNI	GTAC	2 cut(s)	33, 238
RseI	CAYNNNNRTG	1 cut(s)	800
SaqAI	TTAA	2 cut(s)	729, 749
SatI	GCNGC	7 cut(s)	87, 99, 116, 119, 168, 177, 200
Sau3AI	GATC	2 cut(s)	646, 858
Sau96I	GGNCC	2 cut(s)	129, 298
SchI	GAGTC	2 cut(s)	57, 262
ScrFI	CCNGG	2 cut(s)	302, 393
SduI	GDGCHC	1 cut(s)	797
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	129, 298
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	628, 680, 726
StyD4I	CCNGG	2 cut(s)	300, 391
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	6 cut(s)	133, 193, 310, 623, 777, 816
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	144, 213, 273
TasI	AATT	3 cut(s)	628, 680, 726
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	5 cut(s)	89, 101, 118, 170, 179
TfiI	GAWTC	2 cut(s)	153, 740
Tru1I	TTAA	2 cut(s)	729, 749
Tru9I	TTAA	2 cut(s)	729, 749
TscAI	CASTG	3 cut(s)	561, 721, 807
TseFI	GTSAC	2 cut(s)	382, 712
TseI	GCWGC	2 cut(s)	118, 199
Tsp45I	GTSAC	2 cut(s)	382, 712
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	3 cut(s)	561, 721, 807
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	129, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.