AT2G35170

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14827360 .. 14829844
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35170.1

Sequence Viewer

Length: 1455 bp
ATGCATCTGAAGAAATCATCTGTAACAGAACGACGATTAATCGGGAAAGACGATTCCGATCCAAACCAAATCCCCAATCCGATTCATCATCATCATCAGACCCAGAATAAAAATCGAACCGCCATTGATAATAAAGGCTCTGGCTTCACTAAGTATAATCATCCCCAAGGTCAGAATCATCATCACACGGTTGATATCCCAACCGGTGTTGACCATTTCCGACGAAGAAGCGCACGGGCACGATCAGGATCGATTTCTTCATTTTTCCCATCAAATCTTTTGTCTTCTCTTTCTTCCTATCGTCCTGTGATTGCTCGGTTCTTGAGGAAGCTTCTACGCTATACCCTTAGAGCCCGTTTGATTTGTTTCCATCTTCGTTTCTTGCTTCTTCTCGCTGTCCCTCCTTTATACATCTTCTTCCTTGTTATCAATCTTCGTATCTTCCTTCGTCTAGTCTTTGTGATTATCGCTTTATCCTTCATCCTCTCGATCTCTCTCAGATTCGCTCTTCCTCACTTAACATCAATTCGTCTTTTTGTCGCACGCTTGCTGACATTTATCCCTGCCAGATTCTCTTCCTCTCAGCCGAGCACTGACCGAGTTGTTTGGTCCATTGGGTCGAAGCCAGTTGCGGAGAATAATAAGACAAATTCAGGATCTTGGGTTCAGAAGTATGGCACTAATGATATGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAAGTGGAGTTTATTACTATTCTATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAATATGATGGTTATGGAGTAGAAACATGGTCTAAAGGGAGTAGGTATCGAGGTCAATATAGGTTAGGTCTAAGACATGGAATTGGAGTTTATACGTTTTATACAGGAGATGTGTATGCTGGTGAATGGTCTAATGGGCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGATATGACGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGTAGTTACCATTTCAGAAATGGTGATGCGTATGCTGGGGAGTATTTTGCAGACAAGATGCATGGTTTTGGAGTGTATCACTTTGCGAACGGGCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTTGGTATGTATACTTTCAGGAATGGTGATACACAAGCCGGTCATTGGGAAGACGGTGTACTCAGTTGTCCTACCGAGCAGACTATCCGTCCTGGATCATCTTTTACCATAAGCCATTCCAAAGTTGTTGATGCTGTTGAGCAAGCAAGGAAAGCAGCTGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGGATCAAGAGAGCGGTGATGGCTGCAAATAGAGCAGCGAATGCAGCTAGAGTAGCAGCCGTGAAGGCTGTCCAATCCCAGACCTTTCACAGGAATGATGGCGATCTTGAAACCAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

54.78

Weight (kDa)

9.7

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 254 - 276 1.3e-06 MORN repeat
MORN PF02493 300 - 322 7.3e-08 MORN repeat
MORN PF02493 346 - 367 4.5e-06 MORN repeat
MORN PF02493 369 - 391 3.5e-06 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1346
AccI GTMKAC 1 cut(s) 1151
AciI CCGC 3 cut(s) 120, 632, 1346
AclWI GGATC 5 cut(s) 53, 256, 664, 1243, 1343
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 1200
AfiI CCNNNNNNNGG 2 cut(s) 1185, 1422
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 982, 1442
AhdI GACNNNNNGTC 1 cut(s) 1227
AjnI CCWGG 1 cut(s) 1231
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 4 cut(s) 331, 1115, 1298, 1379
AluI AGCT 4 cut(s) 331, 1115, 1298, 1379
Alw21I GWGCWC 1 cut(s) 593
AlwI GGATC 5 cut(s) 53, 256, 664, 1243, 1343
AoxI GGCC 1 cut(s) 1000
ApeKI GCWGC 5 cut(s) 1295, 1355, 1367, 1376, 1388
ApoI RAATTY 1 cut(s) 649
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 917, 1040, 1178, 1360
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 355
BarI GAAGNNNNNNTAC 2 cut(s) 1182, 1214
BauI CACGAG 1 cut(s) 1121
BbsI GAAGAC 2 cut(s) 276, 1197
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 5 cut(s) 1307, 1342, 1379, 1388, 1400
BccI CCATC 7 cut(s) 277, 378, 773, 785, 950, 1345, 1424
BceAI ACGGC 1 cut(s) 1376
BciT130I CCWGG 1 cut(s) 1233
BfaI CTAG 2 cut(s) 452, 1380
BglI GCCNNNNNGGC 1 cut(s) 1397
BisI GCNGC 5 cut(s) 1296, 1356, 1368, 1377, 1389
BlsI GCNGC 5 cut(s) 1297, 1357, 1369, 1378, 1390
Bme1390I CCNGG 1 cut(s) 1233
Bme18I GGWCC 1 cut(s) 609
BmeRI GACNNNNNGTC 1 cut(s) 1227
BmgT120I GGNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 1233
BmsI GCATC 4 cut(s) 13, 1021, 1053, 1261
BpiI GAAGAC 2 cut(s) 276, 1197
BpuEI CTTGAG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 251
BsaBI GATNNNNATC 3 cut(s) 57, 247, 1434
BsaJI CCNNGG 3 cut(s) 166, 928, 1003
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 1185, 1422
Bse118I RCCGGY 2 cut(s) 203, 1178
Bse1I ACTGG 1 cut(s) 626
Bse8I GATNNNNATC 3 cut(s) 57, 247, 1434
BseBI CCWGG 1 cut(s) 1233
BseCI ATCGAT 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 166, 928, 1003
BseGI GGATG 3 cut(s) 160, 480, 961
BseJI GATNNNNATC 3 cut(s) 57, 247, 1434
BseLI CCNNNNNNNGG 2 cut(s) 1185, 1422
BseMII CTCAG 5 cut(s) 511, 596, 942, 1216, 1290
BseNI ACTGG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 5 cut(s) 1307, 1342, 1379, 1388, 1400
BseYI CCCAGC 1 cut(s) 1040
BshFI GGCC 1 cut(s) 1002
BshTI ACCGGT 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 593
BsiSI CCGG 2 cut(s) 204, 1179
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 1185, 1422
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 1 cut(s) 1002
Bsp1286I GDGCHC 3 cut(s) 241, 355, 593
Bsp143I GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
Bsp19I CCATGG 1 cut(s) 928
BspACI CCGC 3 cut(s) 120, 632, 1346
BspANI GGCC 1 cut(s) 1002
BspCNI CTCAG 5 cut(s) 510, 595, 943, 1215, 1291
BspDI ATCGAT 1 cut(s) 251
BspPI GGATC 5 cut(s) 53, 256, 664, 1243, 1343
BspQI GCTCTTC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 1346
BsrFI RCCGGY 2 cut(s) 203, 1178
BsrI ACTGG 1 cut(s) 626
BssAI RCCGGY 2 cut(s) 203, 1178
BssECI CCNNGG 3 cut(s) 166, 928, 1003
BssMI GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
BssNAI GTATAC 1 cut(s) 1152
BssSI CACGAG 1 cut(s) 1121
BssT1I CCWWGG 3 cut(s) 166, 928, 1003
Bst1107I GTATAC 1 cut(s) 1152
Bst2BI CACGAG 1 cut(s) 1121
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 2 cut(s) 190, 1196
Bst6I CTCTTC 3 cut(s) 513, 580, 1323
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstC8I GCNNGC 3 cut(s) 544, 548, 1284
BstDEI CTNAG 8 cut(s) 150, 347, 497, 582, 854, 951, 1202, 1299
BstDSI CCRYGG 1 cut(s) 928
BstENI CCTNNNNNAGG 1 cut(s) 1420
BstF5I GGATG 3 cut(s) 160, 480, 961
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 8 cut(s) 61, 245, 251, 492, 659, 1238, 1338, 1438
BstMBI GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
BstMWI GCNNNNNNNGC 8 cut(s) 1292, 1304, 1352, 1364, 1373, 1376, 1385, 1397
BstNI CCWGG 1 cut(s) 1233
BstSCI CCNGG 1 cut(s) 1231
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 5 cut(s) 1307, 1342, 1379, 1388, 1400
BstV2I GAAGAC 2 cut(s) 276, 1197
BstX2I RGATCY 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 1 cut(s) 656
BstZ17I GTATAC 1 cut(s) 1152
Bsu15I ATCGAT 1 cut(s) 251
BsuRI GGCC 1 cut(s) 1002
BsuTUI ATCGAT 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 3 cut(s) 160, 480, 961
BtsI GCAGTG 1 cut(s) 929
BtsIMutI CAGTG 2 cut(s) 591, 929
Cac8I GCNNGC 3 cut(s) 544, 548, 1284
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 2 cut(s) 203, 1178
Cfr13I GGNCC 1 cut(s) 609
ClaI ATCGAT 1 cut(s) 251
Csp6I GTAC 1 cut(s) 1199
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 6 cut(s) 810, 860, 929, 998, 1067, 1310
CviQI GTAC 1 cut(s) 1199
DdeI CTNAG 8 cut(s) 150, 347, 497, 582, 854, 951, 1202, 1299
DpnI GATC 8 cut(s) 60, 244, 250, 491, 658, 1237, 1337, 1437
DpnII GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
DriI GACNNNNNGTC 1 cut(s) 1227
Eam1104I CTCTTC 3 cut(s) 513, 580, 1323
Eam1105I GACNNNNNGTC 1 cut(s) 1227
EarI CTCTTC 3 cut(s) 513, 580, 1323
Eco130I CCWWGG 3 cut(s) 166, 928, 1003
Eco24I GRGCYC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 1420
EcoRII CCWGG 1 cut(s) 1231
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 3 cut(s) 166, 928, 1003
EcoT22I ATGCAT 2 cut(s) 6, 1068
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 3 cut(s) 166, 928, 1003
FaeI CATG 6 cut(s) 813, 863, 932, 1001, 1070, 1313
FaqI GGGAC 1 cut(s) 383
FatI CATG 6 cut(s) 809, 859, 928, 997, 1066, 1309
FblI GTMKAC 1 cut(s) 1151
Fnu4HI GCNGC 5 cut(s) 1296, 1356, 1368, 1377, 1389
FokI GGATG 3 cut(s) 147, 467, 968
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 5 cut(s) 1296, 1356, 1368, 1377, 1389
FspBI CTAG 2 cut(s) 452, 1380
GlaI GCGC 1 cut(s) 232
GluI GCNGC 5 cut(s) 1296, 1356, 1368, 1377, 1389
GsaI CCCAGC 1 cut(s) 1044
HaeIII GGCC 1 cut(s) 1002
HapII CCGG 2 cut(s) 204, 1179
HhaI GCGC 1 cut(s) 233
Hin1II CATG 6 cut(s) 813, 863, 932, 1001, 1070, 1313
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 5 cut(s) 53, 82, 175, 501, 570
HpaII CCGG 2 cut(s) 204, 1179
HphI GGTGA 4 cut(s) 917, 1040, 1178, 1360
Hpy166II GTNNAC 3 cut(s) 211, 1152, 1199
Hpy188III TCNNGA 9 cut(s) 43, 246, 322, 487, 654, 723, 1159, 1339, 1439
Hpy8I GTNNAC 3 cut(s) 211, 1152, 1199
Hpy99I CGWCG 2 cut(s) 36, 225
HpyAV CCTTC 7 cut(s) 455, 487, 689, 758, 1103, 1125, 1390
HpyCH4III ACNGT 2 cut(s) 190, 1196
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 5 cut(s) 4, 1055, 1066, 1358, 1376
HpyF10VI GCNNNNNNNGC 8 cut(s) 1292, 1304, 1352, 1364, 1373, 1376, 1385, 1397
HpyF3I CTNAG 8 cut(s) 150, 347, 497, 582, 854, 951, 1202, 1299
HpySE526I ACGT 1 cut(s) 878
Hsp92II CATG 6 cut(s) 813, 863, 932, 1001, 1070, 1313
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 1112
Lsp1109I GCAGC 5 cut(s) 1307, 1342, 1379, 1388, 1400
LweI GCATC 4 cut(s) 13, 1021, 1053, 1261
MaeI CTAG 2 cut(s) 452, 1380
MaeII ACGT 1 cut(s) 878
MaeIII GTNAC 2 cut(s) 22, 1010
MalI GATC 8 cut(s) 60, 244, 250, 491, 658, 1237, 1337, 1437
MbiI CCGCTC 1 cut(s) 1346
MboI GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
MfeI CAATTG 1 cut(s) 1447
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 3 cut(s) 241, 355, 593
MluCI AATT 4 cut(s) 525, 649, 864, 1447
MmeI TCCRAC 1 cut(s) 244
Mph1103I ATGCAT 2 cut(s) 6, 1068
MroXI GAANNNNTTC 1 cut(s) 718
MseI TTAA 2 cut(s) 38, 518
MslI CAYNNNNRTG 3 cut(s) 933, 1104, 1425
MspA1I CMGCKG 1 cut(s) 1298
MspI CCGG 2 cut(s) 204, 1179
MspR9I CCNGG 1 cut(s) 1233
MunI CAATTG 1 cut(s) 1447
Mva1269I GAATGC 1 cut(s) 1378
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 8 cut(s) 1292, 1304, 1352, 1364, 1373, 1376, 1385, 1397
NcoI CCATGG 1 cut(s) 928
NdeII GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
NlaIII CATG 6 cut(s) 813, 863, 932, 1001, 1070, 1313
NmeAIII GCCGAG 1 cut(s) 612
NsiI ATGCAT 2 cut(s) 6, 1068
PciSI GCTCTTC 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 1378
PdmI GAANNNNTTC 1 cut(s) 718
PfeI GAWTC 5 cut(s) 53, 82, 175, 501, 570
PfoI TCCNGGA 1 cut(s) 1231
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 5 cut(s) 1297, 1357, 1369, 1378, 1390
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 1231
PspFI CCCAGC 1 cut(s) 1040
PspGI CCWGG 1 cut(s) 1231
PspPI GGNCC 1 cut(s) 609
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 1298
RsaI GTAC 1 cut(s) 1200
RsaNI GTAC 1 cut(s) 1199
RseI CAYNNNNRTG 3 cut(s) 933, 1104, 1425
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 38, 518
SatI GCNGC 5 cut(s) 1296, 1356, 1368, 1377, 1389
Sau3AI GATC 8 cut(s) 58, 242, 248, 489, 656, 1235, 1335, 1435
Sau96I GGNCC 1 cut(s) 609
ScrFI CCNGG 1 cut(s) 1233
SduI GDGCHC 3 cut(s) 241, 355, 593
SfaNI GCATC 4 cut(s) 13, 1021, 1053, 1261
SinI GGWCC 1 cut(s) 609
SmiMI CAYNNNNRTG 3 cut(s) 933, 1104, 1425
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 4 cut(s) 525, 649, 864, 1447
SsiI CCGC 3 cut(s) 120, 632, 1346
SspMI CTAG 2 cut(s) 452, 1380
StyD4I CCNGG 1 cut(s) 1231
StyI CCWWGG 3 cut(s) 166, 928, 1003
TaaI ACNGT 2 cut(s) 190, 1196
TaiI ACGT 1 cut(s) 881
TaqI TCGA 5 cut(s) 115, 251, 488, 620, 832
TaqII GACCGA 1 cut(s) 612
TasI AATT 4 cut(s) 525, 649, 864, 1447
TatI WGTACW 1 cut(s) 1198
TfiI GAWTC 5 cut(s) 53, 82, 175, 501, 570
Tru1I TTAA 2 cut(s) 38, 518
Tru9I TTAA 2 cut(s) 38, 518
TscAI CASTG 2 cut(s) 598, 929
TseI GCWGC 5 cut(s) 1295, 1355, 1367, 1376, 1388
TspDTI ATGAA 8 cut(s) 74, 249, 469, 695, 708, 764, 1122, 1326
TspGWI ACGGA 2 cut(s) 987, 1217
TspRI CASTG 2 cut(s) 598, 929
VpaK11BI GGWCC 1 cut(s) 609
VspI ATTAAT 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 1420
XapI RAATTY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XmiI GTMKAC 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 718
XspI CTAG 2 cut(s) 452, 1380
Zsp2I ATGCAT 2 cut(s) 6, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.