AT4G17080

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9601348 .. 9604265
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17080.1

Sequence Viewer

Length: 1542 bp
ATGCATCTGAAGAATTCTACTGTAGCAGAACGGCGGTACATCGGAAAAGAAACCGCCGGTTATTTAACTTCTTCCTCCGATTTGGATCCGAAACCTAAGATTAAACATCATCGTCCTCTTCAGGTACCTGAGATTTTGACTCCAGACATTGGTGCTGGTGCTGGATTCAGTGTGTATAATAATCAAGTTCAAGCTCAGAGTCGTCATCATCTGACGGTTGAAATCCCAGATTCATCGTCTCACAATCTTACATCTAAGAGACCTGTGGTGGTTCAATCTTCTAATCCGTTCAACGTTGACGATTTCCGAAGACAACAACGCGCAAGCTTGGGTCCGATTTCATCTTATTGTCCGTCGTATCTTTTATCGTGGTTTTCTTCTTCTCTTCCATCGATCCCATCGGCCACTAATCAGAAGCTTCTCCGTCATGTTCTTAGAGTCCGTTTGATATGTTTCCATCTTCGTTTCTTACTTCTTCTCTCTGTTCCTCCTCTCTACATCTTCTTCTTGTTGATTAGTTTCAGATTCTTCCTTCTCTTTGTCTTCTCGATTATCGCTTTTTCTTTCGTCCTTTCGATCTCTCTCAAATTCGCTCTTCCTCACTTACCATCGATTCGTTTGATTATCGCTCGGTTACTTTCTCTCAAGCTTACCCCTACCAGATCATCCTCTTCATCTCAGGAGAACACTAAACATGTTATTTGGTCAATTGGGTCTAAGCCTGTGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCAGAAGTACAGCTCTGGTGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAGTGGAGTTTATTACTATTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAGTATGATGGATATGGAGTTGAAACTTGGGCTAAAGGGAGTAGGTACCGAGGTCAATACAGGCAAGGGATGAGACATGGAACTGGTATCTACAGATTTTATACAGGGGATGTATATGCTGGTGAGTGGTCTAATGGACAGAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGGGGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAATTTGGAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGGTATGTACACGTTCAGGAATGGTGAGACACAGGCAGGCCATTGGGAAGACGGAGTTCTTAACTGTCCTACCGAGCAGACCACTCGCCCTGATTCATCGTTTTCCATCAGTCATTCCAAGGTTGTCGACACTGTCCAGCAAGCAAGGAAAGCAGCCAAGAAAGCACGCGAAGTTGTGAAAGTTGAAGAGAGAGTGAACAGAGCAGTGATGGTCGCAAACCGAGCAGCAAATGCTGCTAGAGTTGCTGCTACAAAGGCTGTCCAAACCCAAACATTTCATTGTAGTAGTGGTGACGATCCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

57.71

Weight (kDa)

9.64

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 285 - 307 1.7e-06 MORN repeat
MORN PF02493 331 - 353 5.2e-07 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 124, 921
AccB1I GGYRCC 2 cut(s) 124, 921
AccB7I CCANNNNNTGG 1 cut(s) 149
AccI GTMKAC 3 cut(s) 783, 1037, 1362
AccII CGCG 2 cut(s) 321, 1404
AciI CCGC 2 cut(s) 34, 54
AclI AACGTT 1 cut(s) 294
AclWI GGATC 4 cut(s) 80, 93, 388, 1526
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 13, 587
AcuI CTGAAG 2 cut(s) 29, 104
AfaI GTAC 5 cut(s) 38, 126, 767, 923, 1244
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 2 cut(s) 694, 1245
AgsI TTSAA 6 cut(s) 191, 221, 275, 292, 899, 1421
AjnI CCWGG 1 cut(s) 1208
AluBI AGCT 5 cut(s) 194, 327, 418, 649, 771
AluI AGCT 5 cut(s) 194, 327, 418, 649, 771
Alw26I GTCTC 4 cut(s) 243, 253, 943, 1256
AlwI GGATC 4 cut(s) 80, 93, 388, 1526
AoxI GGCC 3 cut(s) 402, 1093, 1273
ApeKI GCWGC 4 cut(s) 1388, 1460, 1469, 1481
ApoI RAATTY 2 cut(s) 13, 587
Asp718I GGTACC 2 cut(s) 124, 921
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 5 cut(s) 788, 1010, 1133, 1271, 1538
AvaII GGWCC 1 cut(s) 332
BaeI ACNNNNGTAYC 2 cut(s) 913, 946
BamHI GGATCC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 124, 921
BarI GAAGNNNNNNTAC 2 cut(s) 836, 868
BbsI GAAGAC 4 cut(s) 316, 535, 743, 1290
BbvI GCAGC 4 cut(s) 1400, 1456, 1468, 1472
BccI CCATC 9 cut(s) 397, 406, 465, 616, 866, 878, 1043, 1349, 1438
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BciT130I CCWGG 1 cut(s) 1210
BcoDI GTCTC 4 cut(s) 243, 253, 943, 1256
BfaI CTAG 1 cut(s) 1473
BfmI CTRYAG 2 cut(s) 21, 967
BisI GCNGC 4 cut(s) 1389, 1461, 1470, 1482
BlsI GCNGC 4 cut(s) 1390, 1462, 1471, 1483
Bme1390I CCNGG 1 cut(s) 1210
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 5 cut(s) 87, 126, 333, 923, 1207
BmrFI CCNGG 1 cut(s) 1210
BmsI GCATC 3 cut(s) 13, 1146, 1201
BpiI GAAGAC 4 cut(s) 316, 535, 743, 1290
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 629
Bsa29I ATCGAT 2 cut(s) 392, 611
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 925, 1021, 1096, 1353
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 964
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 1210
BseCI ATCGAT 2 cut(s) 392, 611
BseDI CCNNGG 4 cut(s) 925, 1021, 1096, 1353
BseGI GGATG 5 cut(s) 665, 951, 991, 1054, 1161
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 5 cut(s) 120, 209, 692, 720, 1035
BseNI ACTGG 1 cut(s) 964
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 4 cut(s) 1400, 1456, 1468, 1472
BseYI CCCAGC 1 cut(s) 1133
Bsh1236I CGCG 2 cut(s) 321, 1404
BshFI GGCC 3 cut(s) 404, 1095, 1275
BshNI GGYRCC 2 cut(s) 124, 921
BshVI ATCGAT 2 cut(s) 392, 611
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 4 cut(s) 243, 253, 943, 1256
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 3 cut(s) 404, 1095, 1275
Bso31I GGTCTC 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 5 cut(s) 85, 393, 576, 662, 1531
Bsp19I CCATGG 1 cut(s) 1021
BspACI CCGC 2 cut(s) 34, 54
BspANI GGCC 3 cut(s) 404, 1095, 1275
BspCNI CTCAG 5 cut(s) 121, 208, 691, 721, 1036
BspDI ATCGAT 2 cut(s) 392, 611
BspFNI CGCG 2 cut(s) 321, 1404
BspLI GGNNCC 5 cut(s) 87, 126, 333, 923, 1207
BspPI GGATC 4 cut(s) 80, 93, 388, 1526
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 2 cut(s) 124, 921
BspTNI GGTCTC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 1242
BsrI ACTGG 1 cut(s) 964
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 925, 1021, 1096, 1353
BssMI GATC 5 cut(s) 85, 393, 576, 662, 1531
BssNAI GTATAC 2 cut(s) 784, 1038
BssT1I CCWWGG 3 cut(s) 1021, 1096, 1353
Bst1107I GTATAC 2 cut(s) 784, 1038
Bst2UI CCWGG 1 cut(s) 1210
Bst4CI ACNGT 4 cut(s) 22, 217, 1301, 1369
Bst6I CTCTTC 5 cut(s) 123, 390, 600, 676, 1416
BstAPI GCANNNNNTGC 2 cut(s) 1466, 1469
BstAUI TGTACA 1 cut(s) 1242
BstC8I GCNNGC 4 cut(s) 325, 1273, 1377, 1402
BstDEI CTNAG 9 cut(s) 96, 129, 195, 255, 434, 678, 717, 729, 1044
BstDSI CCRYGG 1 cut(s) 1021
BstF5I GGATG 5 cut(s) 665, 951, 991, 1054, 1161
BstFNI CGCG 2 cut(s) 321, 1404
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 5 cut(s) 88, 396, 579, 665, 1534
BstMAI GTCTC 4 cut(s) 243, 253, 943, 1256
BstMBI GATC 5 cut(s) 85, 393, 576, 662, 1531
BstMWI GCNNNNNNNGC 7 cut(s) 1385, 1397, 1457, 1466, 1469, 1478, 1490
BstNI CCWGG 1 cut(s) 1210
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 1208
BstSFI CTRYAG 2 cut(s) 21, 967
BstUI CGCG 2 cut(s) 321, 1404
BstV1I GCAGC 4 cut(s) 1400, 1456, 1468, 1472
BstV2I GAAGAC 4 cut(s) 316, 535, 743, 1290
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 1028
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 2 cut(s) 784, 1038
Bsu15I ATCGAT 2 cut(s) 392, 611
BsuRI GGCC 3 cut(s) 404, 1095, 1275
BsuTUI ATCGAT 2 cut(s) 392, 611
BtgI CCRYGG 1 cut(s) 1021
BtsCI GGATG 5 cut(s) 665, 951, 991, 1054, 1161
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 3 cut(s) 175, 1365, 1446
Cac8I GCNNGC 4 cut(s) 325, 1273, 1377, 1402
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 332
ClaI ATCGAT 2 cut(s) 392, 611
Csp6I GTAC 5 cut(s) 37, 125, 766, 922, 1243
CviAII CATG 8 cut(s) 428, 695, 753, 953, 1022, 1091, 1160, 1214
CviQI GTAC 5 cut(s) 37, 125, 766, 922, 1243
DdeI CTNAG 9 cut(s) 96, 129, 195, 255, 434, 678, 717, 729, 1044
DpnI GATC 5 cut(s) 87, 395, 578, 664, 1533
DpnII GATC 5 cut(s) 85, 393, 576, 662, 1531
DraI TTTAAA 1 cut(s) 1075
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 5 cut(s) 123, 390, 600, 676, 1416
EarI CTCTTC 5 cut(s) 123, 390, 600, 676, 1416
Eco130I CCWWGG 3 cut(s) 1021, 1096, 1353
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 29, 104
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 1208
EcoT14I CCWWGG 3 cut(s) 1021, 1096, 1353
EcoT22I ATGCAT 2 cut(s) 6, 1161
ErhI CCWWGG 3 cut(s) 1021, 1096, 1353
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 8 cut(s) 431, 698, 756, 956, 1025, 1094, 1163, 1217
FatI CATG 8 cut(s) 427, 694, 752, 952, 1021, 1090, 1159, 1213
FauNDI CATATG 1 cut(s) 1129
FblI GTMKAC 3 cut(s) 783, 1037, 1362
Fnu4HI GCNGC 4 cut(s) 1389, 1461, 1470, 1482
FokI GGATG 5 cut(s) 652, 958, 998, 1061, 1168
Fsp4HI GCNGC 4 cut(s) 1389, 1461, 1470, 1482
FspBI CTAG 1 cut(s) 1473
GlaI GCGC 1 cut(s) 322
GluI GCNGC 4 cut(s) 1389, 1461, 1470, 1482
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 3 cut(s) 404, 1095, 1275
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 323
Hin1II CATG 8 cut(s) 431, 698, 756, 956, 1025, 1094, 1163, 1217
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 2 cut(s) 298, 1363
HindII GTYRAC 2 cut(s) 298, 1363
HindIII AAGCTT 3 cut(s) 325, 416, 647
HinfI GANTC 8 cut(s) 139, 165, 199, 230, 438, 525, 613, 1328
HpaII CCGG 1 cut(s) 57
HphI GGTGA 5 cut(s) 788, 1010, 1133, 1271, 1538
Hpy166II GTNNAC 6 cut(s) 298, 784, 1038, 1245, 1363, 1432
Hpy188III TCNNGA 5 cut(s) 143, 547, 680, 816, 1252
Hpy8I GTNNAC 6 cut(s) 298, 784, 1038, 1245, 1363, 1432
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 5 cut(s) 542, 838, 851, 1196, 1218
HpyCH4III ACNGT 4 cut(s) 22, 217, 1301, 1369
HpyCH4IV ACGT 2 cut(s) 294, 1247
HpyCH4V TGCA 3 cut(s) 4, 1148, 1159
HpyF10VI GCNNNNNNNGC 7 cut(s) 1385, 1397, 1457, 1466, 1469, 1478, 1490
HpyF3I CTNAG 9 cut(s) 96, 129, 195, 255, 434, 678, 717, 729, 1044
HpySE526I ACGT 2 cut(s) 294, 1247
Hsp92II CATG 8 cut(s) 431, 698, 756, 956, 1025, 1094, 1163, 1217
HspAI GCGC 1 cut(s) 321
KpnI GGTACC 2 cut(s) 128, 925
Kzo9I GATC 5 cut(s) 85, 393, 576, 662, 1531
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 1205
Lsp1109I GCAGC 4 cut(s) 1400, 1456, 1468, 1472
LweI GCATC 3 cut(s) 13, 1146, 1201
MaeI CTAG 1 cut(s) 1473
MaeII ACGT 2 cut(s) 294, 1247
MaeIII GTNAC 3 cut(s) 633, 724, 1526
MalI GATC 5 cut(s) 87, 395, 578, 664, 1533
MboI GATC 5 cut(s) 85, 393, 576, 662, 1531
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 85
MluCI AATT 4 cut(s) 13, 587, 708, 1178
MlyI GAGTC 3 cut(s) 133, 208, 447
MmeI TCCRAC 1 cut(s) 1045
Mph1103I ATGCAT 2 cut(s) 6, 1161
MseI TTAA 4 cut(s) 65, 102, 1074, 1296
MslI CAYNNNNRTG 2 cut(s) 1026, 1197
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 1210
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 1210
MvnI CGCG 2 cut(s) 321, 1404
MwoI GCNNNNNNNGC 7 cut(s) 1385, 1397, 1457, 1466, 1469, 1478, 1490
NcoI CCATGG 1 cut(s) 1021
NdeI CATATG 1 cut(s) 1129
NdeII GATC 5 cut(s) 85, 393, 576, 662, 1531
NlaIII CATG 8 cut(s) 431, 698, 756, 956, 1025, 1094, 1163, 1217
NlaIV GGNNCC 5 cut(s) 87, 126, 333, 923, 1207
NmuCI GTSAC 2 cut(s) 724, 1526
NsiI ATGCAT 2 cut(s) 6, 1161
NspI RCATGY 1 cut(s) 698
PciI ACATGT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 600
PfeI GAWTC 5 cut(s) 165, 230, 525, 613, 1328
PflFI GACNNNGTC 1 cut(s) 1367
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 1390, 1462, 1471, 1483
PleI GAGTC 3 cut(s) 133, 207, 446
PpsI GAGTC 3 cut(s) 133, 207, 446
PscI ACATGT 1 cut(s) 694
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 1208
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 1208
PspN4I GGNNCC 5 cut(s) 87, 126, 333, 923, 1207
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 1367
RsaI GTAC 5 cut(s) 38, 126, 767, 923, 1244
RsaNI GTAC 5 cut(s) 37, 125, 766, 922, 1243
RseI CAYNNNNRTG 2 cut(s) 1026, 1197
SalI GTCGAC 1 cut(s) 1361
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 4 cut(s) 65, 102, 1074, 1296
SatI GCNGC 4 cut(s) 1389, 1461, 1470, 1482
Sau3AI GATC 5 cut(s) 85, 393, 576, 662, 1531
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 3 cut(s) 133, 208, 447
ScrFI CCNGG 1 cut(s) 1210
SfaNI GCATC 3 cut(s) 13, 1146, 1201
SfcI CTRYAG 2 cut(s) 21, 967
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 1026, 1197
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 13, 587, 708, 1178
SsiI CCGC 2 cut(s) 34, 54
SspMI CTAG 1 cut(s) 1473
StyD4I CCNGG 1 cut(s) 1208
StyI CCWWGG 3 cut(s) 1021, 1096, 1353
TaaI ACNGT 4 cut(s) 22, 217, 1301, 1369
TaiI ACGT 2 cut(s) 297, 1250
TaqI TCGA 5 cut(s) 392, 548, 575, 611, 1362
TasI AATT 4 cut(s) 13, 587, 708, 1178
TatI WGTACW 2 cut(s) 765, 1242
TfiI GAWTC 5 cut(s) 165, 230, 525, 613, 1328
Tru1I TTAA 4 cut(s) 65, 102, 1074, 1296
Tru9I TTAA 4 cut(s) 65, 102, 1074, 1296
TscAI CASTG 3 cut(s) 175, 1372, 1446
TseFI GTSAC 2 cut(s) 724, 1526
TseI GCWGC 4 cut(s) 1388, 1460, 1469, 1481
Tsp45I GTSAC 2 cut(s) 724, 1526
TspDTI ATGAA 8 cut(s) 222, 330, 663, 788, 857, 1215, 1320, 1502
TspGWI ACGGA 5 cut(s) 276, 342, 413, 431, 1302
TspRI CASTG 3 cut(s) 175, 1372, 1446
Tth111I GACNNNGTC 1 cut(s) 1367
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 13, 587
XceI RCATGY 1 cut(s) 698
XmiI GTMKAC 3 cut(s) 783, 1037, 1362
XspI CTAG 1 cut(s) 1473
Zsp2I ATGCAT 2 cut(s) 6, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.