Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Forward (+)

31296813 .. 31300217

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGCATCAGAAGAAATCAGAAGCTCAGATCGGAAAAGAAAGCACCGGCCTCTCTTCCGATTTCAACCCCACCATAATCTCCGCCCCACCACCTTCATCTCTCGCTTCAATCTCCCACCAATTCTCCCATTTCGCTCACTACCCATCTCTAAATGATGCCCCGATTCCTCAGACCATACCCTACAAGCGTCCCCTTCTGACCCAAGCTCACTCCTCTCTAGTCAAATCCCCCACCCTTTACAAACTCCAACCCGCCCCTCAAAACCCACCTCTCTTTTCCCCTTCCCTCGCCGCCAAGTCCGCCTTCTTCCGCCTCCTCCGCCGCGCCAACCGTCTCCGTCGCCTCTTCTTGCTCCTCTCCCTCCCCTTCTTCTACTTCCTCGTCTCTCACCCAAGTCATTCCTTCATTCTCGACTTCCTCTCTGCTTTCGCTTTCTCATCCGCATTGCTCTTCTCCCTCAATCTAGCCCTCCCACGGCTTCCGTCTATCCGGCTTTTTCTGGCCAGGTCGTTTCCGATCAAGCTCAAGTCGTCGGCTTCATTGTCCAGGCCGCCACTGCCGGTGTTCTGGTCAATCGGGTCGAGGCAGAAGCCGGAGAAGAGAGGGATTTCGGGGTGTTGGGTGCAGGTTTACAGCAACGGGGACGTGTATGAGGGTGAGTTTCATAAGGGGAAGTGTTCCGGGAGCGGGGTTTATTACTATTATATGAGTGGGAGATATGAGGGAGATTGGGTGGATGAAAAGTATGATGGATATGGTGTAGAGACTTGGGCTAGAGGGAGCCGGTACCGCGGGCAGTATAGGCAGGGGCTTAGGCATGGTTTCGGGGTGTATAGGTTCTACACAGGGGATGTTTATGCCGGGGAATGGTCTAATGGGCAGAGTCATGGGTGTGGAGTTCATACATGTGAGGATGGGAGTAGATATGTAGGGGAATTCAAGTGGGGTGTCAAGCATGGCCTTGGTCACTACCATTTCAGAAATGGAGACACTTATGCTGGAGAGTATTTTGCGGACAAAATGCATGGGTTTGGGGTCTATCAATTTGCAAATGGGCATCGTTATGAGGGAGCTTGGCATGAGGGTAGAAGGCAAGGCCTCGGTATGTACACATTTAGAAATGGGGAGACTCAAGCTGGTCACTGGCAAAATGGAATTCTTGATGTTCCAAGCACACAGAATGCAAGTTTTCCTGTATCTCCTGTTGCTGTTAATCATTCCAAAGTCCTTAATGCAGTTCAGTTTTTGTTGTGTTGTTATAATCAGGAAGCACGAATAGTAGCGGAGAAAGCCTATGATGTGGCCAAGGTGGATGAAAGAGTTAACAGGGCTGTTATTGCAGCCAACAGGGCAGCCAATGCAGCTAGAGTAGCAGCCGTGAAAGCTGTCCAAAAACAAATGCAGCATAATAGTAGCAGTGACAACATTCCAATTCCAGTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

481

Amino Acids

53.87

Weight (kDa)

9.61

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORN	PF02493	263 - 285	6.7e-06	MORN repeat
MORN	PF02493	286 - 308	5.2e-06	MORN repeat
MORN	PF02493	332 - 354	2.1e-06	MORN repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1260
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	2 cut(s)	324, 792
AcoI	YGGCCR	2 cut(s)	501, 1302
AcsI	RAATTY	2 cut(s)	935, 1155
AfaI	GTAC	2 cut(s)	788, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
AflIII	ACRYGT	2 cut(s)	645, 905
AgsI	TTSAA	3 cut(s)	64, 108, 940
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	503, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	7 cut(s)	23, 206, 523, 1073, 1136, 1364, 1385
AluI	AGCT	7 cut(s)	23, 206, 523, 1073, 1136, 1364, 1385
Alw26I	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
AoxI	GGCC	6 cut(s)	46, 501, 548, 958, 1096, 1302
ApeKI	GCWGC	5 cut(s)	1340, 1352, 1361, 1373, 1402
ApoI	RAATTY	2 cut(s)	935, 1155
Asp718I	GGTACC	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	326
AsuC2I	CCSGG	2 cut(s)	682, 862
AsuHPI	GGTGA	2 cut(s)	380, 668
BalI	TGGCCA	2 cut(s)	503, 1304
BanI	GGYRCC	1 cut(s)	786
BbvI	GCAGC	5 cut(s)	1352, 1364, 1373, 1385, 1414
BccI	CCATC	3 cut(s)	151, 743, 908
BceAI	ACGGC	2 cut(s)	491, 1361
BciT130I	CCWGG	2 cut(s)	505, 547
BcnI	CCSGG	2 cut(s)	682, 862
BcoDI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BfaI	CTAG	4 cut(s)	218, 464, 774, 1365
BfuAI	ACCTGC	1 cut(s)	616
BglI	GCCNNNNNGGC	1 cut(s)	1349
BisI	GCNGC	8 cut(s)	291, 322, 551, 1341, 1353, 1362, 1374, 1403
BlsI	GCNGC	8 cut(s)	292, 323, 552, 1342, 1354, 1363, 1375, 1404
Bme1390I	CCNGG	4 cut(s)	505, 547, 682, 862
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	782, 788
BmrFI	CCNGG	4 cut(s)	505, 547, 682, 862
BmsI	GCATC	3 cut(s)	13, 145, 1066
BpmI	CTGGAG	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	509, 1116
BpuMI	CCSGG	2 cut(s)	682, 862
BsaJI	CCNNGG	6 cut(s)	473, 790, 861, 961, 1099, 1305
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 717, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 687, 867
Bse118I	RCCGGY	3 cut(s)	44, 559, 783
Bse1I	ACTGG	2 cut(s)	1148, 1436
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	505, 547
BseDI	CCNNGG	6 cut(s)	473, 790, 861, 961, 1099, 1305
BseGI	GGATG	5 cut(s)	437, 742, 856, 919, 1318
BseLI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	38, 182
BseNI	ACTGG	2 cut(s)	1148, 1436
BseRI	GAGGAG	3 cut(s)	202, 305, 344
BseXI	GCAGC	5 cut(s)	1352, 1364, 1373, 1385, 1414
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	2 cut(s)	324, 792
BshFI	GGCC	6 cut(s)	48, 503, 550, 960, 1098, 1304
BshNI	GGYRCC	1 cut(s)	786
BsiSI	CCGG	7 cut(s)	45, 490, 560, 593, 681, 784, 861
BslFI	GGGAC	2 cut(s)	174, 656
BslI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BsmAI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BsmBI	CGTCTC	2 cut(s)	338, 388
BsmFI	GGGAC	2 cut(s)	174, 656
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	6 cut(s)	48, 503, 550, 960, 1098, 1304
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	27, 516
BspANI	GGCC	6 cut(s)	48, 503, 550, 960, 1098, 1304
BspCNI	CTCAG	2 cut(s)	37, 181
BspFNI	CGCG	2 cut(s)	324, 792
BspLI	GGNNCC	2 cut(s)	782, 788
BspMI	ACCTGC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	3 cut(s)	44, 559, 783
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	1148, 1436
BssAI	RCCGGY	3 cut(s)	44, 559, 783
BssECI	CCNNGG	6 cut(s)	473, 790, 861, 961, 1099, 1305
BssMI	GATC	2 cut(s)	27, 516
BssT1I	CCWWGG	2 cut(s)	961, 1305
Bst2UI	CCWGG	2 cut(s)	505, 547
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	4 cut(s)	58, 350, 455, 593
BstAPI	GCANNNNNTGC	1 cut(s)	1358
BstAUI	TGTACA	1 cut(s)	1107
BstC8I	GCNNGC	1 cut(s)	794
BstDEI	CTNAG	3 cut(s)	24, 168, 812
BstDSI	CCRYGG	2 cut(s)	473, 790
BstF5I	GGATG	5 cut(s)	437, 742, 856, 919, 1318
BstFNI	CGCG	2 cut(s)	324, 792
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	30, 519
BstMAI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BstMBI	GATC	2 cut(s)	27, 516
BstNI	CCWGG	2 cut(s)	505, 547
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	4 cut(s)	503, 545, 680, 860
BstUI	CGCG	2 cut(s)	324, 792
BstV1I	GCAGC	5 cut(s)	1352, 1364, 1373, 1385, 1414
BsuRI	GGCC	6 cut(s)	48, 503, 550, 960, 1098, 1304
BtgI	CCRYGG	2 cut(s)	473, 790
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	5 cut(s)	437, 742, 856, 919, 1318
BtsI	GCAGTG	2 cut(s)	554, 1423
BtsIMutI	CAGTG	3 cut(s)	554, 1141, 1423
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	794
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	3 cut(s)	44, 559, 783
Cfr42I	CCGCGG	1 cut(s)	793
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	787, 1108
CviAII	CATG	6 cut(s)	818, 887, 906, 956, 1025, 1079
CviQI	GTAC	2 cut(s)	787, 1108
DdeI	CTNAG	3 cut(s)	24, 168, 812
DpnI	GATC	2 cut(s)	29, 518
DpnII	GATC	2 cut(s)	27, 516
EaeI	YGGCCR	2 cut(s)	501, 1302
Eam1104I	CTCTTC	4 cut(s)	58, 350, 455, 593
EarI	CTCTTC	4 cut(s)	58, 350, 455, 593
EciI	GGCGGA	4 cut(s)	70, 289, 299, 308
Eco130I	CCWWGG	2 cut(s)	961, 1305
Eco147I	AGGCCT	1 cut(s)	1098
EcoRI	GAATTC	2 cut(s)	935, 1155
EcoRII	CCWGG	2 cut(s)	503, 545
EcoT14I	CCWWGG	2 cut(s)	961, 1305
EcoT22I	ATGCAT	2 cut(s)	6, 1026
ErhI	CCWWGG	2 cut(s)	961, 1305
Esp3I	CGTCTC	2 cut(s)	338, 388
FaeI	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	174, 656
FatI	CATG	6 cut(s)	817, 886, 905, 955, 1024, 1078
FauI	CCCGC	3 cut(s)	259, 680, 785
Fnu4HI	GCNGC	8 cut(s)	291, 322, 551, 1341, 1353, 1362, 1374, 1403
FokI	GGATG	5 cut(s)	424, 749, 863, 926, 1325
Fsp4HI	GCNGC	8 cut(s)	291, 322, 551, 1341, 1353, 1362, 1374, 1403
FspBI	CTAG	4 cut(s)	218, 464, 774, 1365
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	8 cut(s)	291, 322, 551, 1341, 1353, 1362, 1374, 1403
GsuI	CTGGAG	1 cut(s)	1020
HaeIII	GGCC	6 cut(s)	48, 503, 550, 960, 1098, 1304
HapII	CCGG	7 cut(s)	45, 490, 560, 593, 681, 784, 861
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	1324
HindII	GTYRAC	1 cut(s)	1324
HinfI	GANTC	3 cut(s)	163, 883, 1129
HpaI	GTTAAC	1 cut(s)	1324
HpaII	CCGG	7 cut(s)	45, 490, 560, 593, 681, 784, 861
HphI	GGTGA	2 cut(s)	380, 668
Hpy166II	GTNNAC	3 cut(s)	631, 1110, 1324
Hpy188III	TCNNGA	3 cut(s)	410, 1160, 1265
Hpy8I	GTNNAC	3 cut(s)	631, 1110, 1324
Hpy99I	CGWCG	2 cut(s)	342, 535
HpyAV	CCTTC	7 cut(s)	102, 203, 291, 313, 376, 412, 1083
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	9 cut(s)	4, 625, 1024, 1049, 1184, 1235, 1340, 1361, 1402
HpyF3I	CTNAG	3 cut(s)	24, 168, 812
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
HspAI	GCGC	1 cut(s)	324
KpnI	GGTACC	1 cut(s)	790
KspAI	GTTAAC	1 cut(s)	1324
KspI	CCGCGG	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	27, 516
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	4 cut(s)	357, 684, 780, 1070
Lsp1109I	GCAGC	5 cut(s)	1352, 1364, 1373, 1385, 1414
LweI	GCATC	3 cut(s)	13, 145, 1066
MaeI	CTAG	4 cut(s)	218, 464, 774, 1365
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	965, 1139, 1418
MalI	GATC	2 cut(s)	29, 518
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	2 cut(s)	27, 516
MboII	GAAGA	7 cut(s)	22, 45, 298, 337, 361, 442, 610
MlsI	TGGCCA	2 cut(s)	503, 1304
MluCI	AATT	5 cut(s)	119, 935, 1043, 1155, 1431
MluNI	TGGCCA	2 cut(s)	503, 1304
MlyI	GAGTC	2 cut(s)	892, 1123
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	2 cut(s)	503, 1304
Mph1103I	ATGCAT	2 cut(s)	6, 1026
MscI	TGGCCA	2 cut(s)	503, 1304
MseI	TTAA	3 cut(s)	1212, 1230, 1323
MslI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
Msp20I	TGGCCA	2 cut(s)	503, 1304
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	7 cut(s)	45, 490, 560, 593, 681, 784, 861
MspR9I	CCNGG	4 cut(s)	505, 547, 682, 862
Mva1269I	GAATGC	1 cut(s)	1186
MvaI	CCWGG	2 cut(s)	505, 547
MvnI	CGCG	2 cut(s)	324, 792
NciI	CCSGG	2 cut(s)	682, 862
NdeII	GATC	2 cut(s)	27, 516
NlaIII	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
NlaIV	GGNNCC	2 cut(s)	782, 788
NmuCI	GTSAC	3 cut(s)	965, 1139, 1418
NsiI	ATGCAT	2 cut(s)	6, 1026
NspI	RCATGY	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	1098
PciI	ACATGT	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	1186
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	680
PkrI	GCNGC	8 cut(s)	292, 323, 552, 1342, 1354, 1363, 1375, 1404
PleI	GAGTC	2 cut(s)	891, 1123
PpsI	GAGTC	2 cut(s)	891, 1123
PscI	ACATGT	1 cut(s)	905
PsiI	TTATAA	1 cut(s)	1260
Psp6I	CCWGG	2 cut(s)	503, 545
PspGI	CCWGG	2 cut(s)	503, 545
PspN4I	GGNNCC	2 cut(s)	782, 788
RsaI	GTAC	2 cut(s)	788, 1109
RsaNI	GTAC	2 cut(s)	787, 1108
RseI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
SacII	CCGCGG	1 cut(s)	793
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	1212, 1230, 1323
SatI	GCNGC	8 cut(s)	291, 322, 551, 1341, 1353, 1362, 1374, 1403
Sau3AI	GATC	2 cut(s)	27, 516
SchI	GAGTC	2 cut(s)	892, 1123
ScrFI	CCNGG	4 cut(s)	505, 547, 682, 862
SfaNI	GCATC	3 cut(s)	13, 145, 1066
Sfr303I	CCGCGG	1 cut(s)	793
SgrBI	CCGCGG	1 cut(s)	793
SmiMI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
SmlI	CTYRAG	2 cut(s)	524, 1131
SmoI	CTYRAG	2 cut(s)	524, 1131
Sse9I	AATT	5 cut(s)	119, 935, 1043, 1155, 1431
SseBI	AGGCCT	1 cut(s)	1098
SspMI	CTAG	4 cut(s)	218, 464, 774, 1365
StuI	AGGCCT	1 cut(s)	1098
StyD4I	CCNGG	4 cut(s)	503, 545, 680, 860
StyI	CCWWGG	2 cut(s)	961, 1305
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	2 cut(s)	411, 581
TasI	AATT	5 cut(s)	119, 935, 1043, 1155, 1431
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	3 cut(s)	293, 324, 553
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	1212, 1230, 1323
Tru9I	TTAA	3 cut(s)	1212, 1230, 1323
TscAI	CASTG	3 cut(s)	561, 1148, 1423
TseFI	GTSAC	3 cut(s)	965, 1139, 1418
TseI	GCWGC	5 cut(s)	1340, 1352, 1361, 1373, 1402
Tsp45I	GTSAC	3 cut(s)	965, 1139, 1418
TspDTI	ATGAA	7 cut(s)	84, 394, 528, 653, 753, 890, 1329
TspGWI	ACGGA	2 cut(s)	326, 471
TspRI	CASTG	3 cut(s)	561, 1148, 1423
XapI	RAATTY	2 cut(s)	935, 1155
XceI	RCATGY	1 cut(s)	909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XspI	CTAG	4 cut(s)	218, 464, 774, 1365
Zsp2I	ATGCAT	2 cut(s)	6, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.