pycom04g04710

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
4353760 .. 4356427
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04710.3

Sequence Viewer

Length: 1278 bp
ATGAACCACACACCTTCCACTTTATCCCACTCTCCCACACTCTCCTCTCTCCACCACCACCCGATTCACTTCCACCGCCATAGCCACACTGCTTTCAATTCCGGCCCTTCTTCTTCCTCTTCTTCTTCGTTTCTGTATTCTGCTTCACTTGCAATCATTCCCTTCGCCACCCGATCACTGGTTCTGAAGCTTTTCCGCCATTTCCGCTGTGCCCATTTGCTCAGAGTCCACTGCCGCTTGATTGTCCTCTTCTTTTTGCCTTCCCTTTACTTCATCACCAGTTCCCGCCGCTCTTTCGCTCTCGATTTCCTCTCTGTGATCGCTTTCTCGGCGGCCCTTTTGATTTCTCTCAACATTGCACTTCCCCGTTTTGTTTCGACTCGGTTGTTTCTTTCCCGCTCTTTGCCAATCAAGCTTTGTTCGTCTTCCTGCGTCTCTAAGCCCGCTCAGCCTGTTCTTTGGTCAATTGGGTCGAAGCCAAAGTTGGACAAAAAGCCGAATTCGGGGTCTTGGGTGCAGGTGTATAGTAATAAGGATGTTTATGAGGGTGAATTTGATAAAGGAAAATGTTCAGGAAGTGGGGTTTATTACTATCATATGAGTGGGAGGTATGAAGGTGATTGGGTGGATGAGAAGTACGATGGTTATGGTGTGGAGACTTGGGCCAGAGGTAGCAGGTATCGCGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACCGGTGATGTTTATGCCGGAGAGTGGTCTAATGGGCAGTGTCATGGGAGTGGCATACATACTTGCGAGGATGGAAGTCGGTATGTTGGGGAGTTTAAGTGGGGTGTCAAACATGGACTTGGTCATTATCAATTCAGAAATGGTGACACATATGCTGGGGAATATTTTGCGGACAAGATGCACGGTTTTGGAGTATATCAGTTTGGGAACGGCCATCGATATGAAGGAGCCTGGCATGAAGGTAGAAAGCAGGGACTTGGCATGTACACTTTCAGAAATGGGGAAACACAATCTGGTCACTGGCAAAATGGGGTGCTAGATATTCCCAGTGCACAAAATACCCAACCTGGATCTTCTTATTCTGCCAACCATGCCAAAGTGCTTAATGCAGTCCAGGAAGCACAGAGAGCTGCTGAGAGAGCATATGCAGTGGCCAAAGTAGAAGAAAGGGTGAACCGAGCTGTAGCGATAGCTAATAAAGCAGCAATTGCTGCACGAGTTGCGGCTGTAAAGGCTGTGCAAAAACAAGTACACCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.41

Weight (kDa)

9.65

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
Acc36I ACCTGC 2 cut(s) 508, 666
AccBSI CCGCTC 3 cut(s) 291, 399, 446
AccII CGCG 1 cut(s) 684
AclWI GGATC 1 cut(s) 1093
AcoI YGGCCR 2 cut(s) 946, 1167
AcsI RAATTY 2 cut(s) 499, 551
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 3 cut(s) 638, 1001, 1266
AfiI CCNNNNNNNGG 3 cut(s) 178, 503, 759
AgeI ACCGGT 1 cut(s) 737
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 965, 1081, 1128
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 5 cut(s) 190, 415, 1145, 1196, 1208
AluI AGCT 5 cut(s) 190, 415, 1145, 1196, 1208
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 2 cut(s) 439, 650
Alw44I GTGCAC 1 cut(s) 1065
AlwI GGATC 1 cut(s) 1093
AoxI GGCC 5 cut(s) 103, 333, 663, 946, 1167
ApaLI GTGCAC 1 cut(s) 1065
ApeKI GCWGC 3 cut(s) 1145, 1217, 1226
ApoI RAATTY 2 cut(s) 499, 551
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsiGI ACCGGT 1 cut(s) 737
Asp700I GAANNNNTTC 2 cut(s) 191, 568
AspS9I GGNCC 3 cut(s) 104, 334, 663
AsuHPI GGTGA 7 cut(s) 268, 560, 629, 727, 752, 890, 1198
BaeGI GKGCMC 2 cut(s) 214, 1069
BalI TGGCCA 1 cut(s) 1169
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BauI CACGAG 1 cut(s) 1230
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 3 cut(s) 1132, 1213, 1229
BccI CCATC 3 cut(s) 635, 800, 957
BceAI ACGGC 1 cut(s) 961
BciT130I CCWGG 3 cut(s) 967, 1083, 1130
BcoDI GTCTC 2 cut(s) 439, 650
BfaI CTAG 1 cut(s) 1052
BfmI CTRYAG 1 cut(s) 1197
BfuAI ACCTGC 2 cut(s) 508, 666
BisI GCNGC 7 cut(s) 235, 289, 333, 1146, 1218, 1227, 1239
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 7 cut(s) 236, 290, 334, 1147, 1219, 1228, 1240
Bme1390I CCNGG 3 cut(s) 967, 1083, 1130
BmgT120I GGNCC 3 cut(s) 104, 334, 663
BmiI GGNNCC 1 cut(s) 964
BmrFI CCNGG 3 cut(s) 967, 1083, 1130
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 724
Bsa29I ATCGAT 1 cut(s) 952
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 503, 759
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 4 cut(s) 183, 279, 1040, 1062
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 3 cut(s) 967, 1083, 1130
BseCI ATCGAT 1 cut(s) 952
BseGI GGATG 3 cut(s) 541, 634, 811
BseLI CCNNNNNNNGG 3 cut(s) 178, 503, 759
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 235, 461, 1140
BseNI ACTGG 4 cut(s) 183, 279, 1040, 1062
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 2 cut(s) 214, 1069
BseXI GCAGC 3 cut(s) 1132, 1213, 1229
BseYI CCCAGC 1 cut(s) 890
BsgI GTGCAG 2 cut(s) 536, 1212
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 5 cut(s) 105, 335, 665, 948, 1169
BshTI ACCGGT 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 1069
BsiSI CCGG 3 cut(s) 102, 738, 753
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 3 cut(s) 178, 503, 759
BsmAI GTCTC 2 cut(s) 439, 650
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 5 cut(s) 105, 335, 665, 948, 1169
Bsp1286I GDGCHC 2 cut(s) 214, 1069
Bsp1407I TGTACA 1 cut(s) 999
Bsp143I GATC 3 cut(s) 173, 318, 1085
Bsp1720I GCTNAGC 1 cut(s) 447
BspANI GGCC 5 cut(s) 105, 335, 665, 948, 1169
BspCNI CTCAG 3 cut(s) 234, 460, 1141
BspDI ATCGAT 1 cut(s) 952
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 964
BspMI ACCTGC 2 cut(s) 508, 666
BspPI GGATC 1 cut(s) 1093
BsrBI CCGCTC 3 cut(s) 291, 399, 446
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 4 cut(s) 183, 279, 1040, 1062
BssAI RCCGGY 1 cut(s) 737
BssMI GATC 3 cut(s) 173, 318, 1085
BssSI CACGAG 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 3 cut(s) 967, 1083, 1130
Bst4CI ACNGT 1 cut(s) 920
Bst6I CTCTTC 2 cut(s) 124, 254
BstAPI GCANNNNNTGC 3 cut(s) 1223, 1226, 1235
BstAUI TGTACA 1 cut(s) 999
BstC8I GCNNGC 2 cut(s) 444, 686
BstDEI CTNAG 4 cut(s) 221, 438, 447, 1149
BstF5I GGATG 3 cut(s) 541, 634, 811
BstFNI CGCG 1 cut(s) 684
BstKTI GATC 3 cut(s) 176, 321, 1088
BstMAI GTCTC 2 cut(s) 439, 650
BstMBI GATC 3 cut(s) 173, 318, 1085
BstNI CCWGG 3 cut(s) 967, 1083, 1130
BstNSI RCATGY 1 cut(s) 1000
BstSCI CCNGG 3 cut(s) 965, 1081, 1128
BstSFI CTRYAG 1 cut(s) 1197
BstSLI GKGCMC 2 cut(s) 214, 1069
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 1132, 1213, 1229
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 1085
Bsu15I ATCGAT 1 cut(s) 952
BsuRI GGCC 5 cut(s) 105, 335, 665, 948, 1169
BsuTUI ATCGAT 1 cut(s) 952
BtsCI GGATG 3 cut(s) 541, 634, 811
BtsI GCAGTG 4 cut(s) 87, 229, 779, 1170
BtsIMutI CAGTG 7 cut(s) 87, 176, 229, 779, 1033, 1069, 1170
BveI ACCTGC 2 cut(s) 508, 666
Cac8I GCNNGC 2 cut(s) 444, 686
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 3 cut(s) 104, 334, 663
ClaI ATCGAT 1 cut(s) 952
CseI GACGC 1 cut(s) 421
Csp6I GTAC 3 cut(s) 637, 1000, 1265
CspAI ACCGGT 1 cut(s) 737
CviAII CATG 6 cut(s) 710, 779, 848, 971, 997, 1106
CviQI GTAC 3 cut(s) 637, 1000, 1265
DdeI CTNAG 4 cut(s) 221, 438, 447, 1149
DpnI GATC 3 cut(s) 175, 320, 1087
DpnII GATC 3 cut(s) 173, 318, 1085
EaeI YGGCCR 2 cut(s) 946, 1167
Eam1104I CTCTTC 2 cut(s) 124, 254
EarI CTCTTC 2 cut(s) 124, 254
EciI GGCGGA 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 965, 1081, 1128
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 6 cut(s) 713, 782, 851, 974, 1000, 1109
FaqI GGGAC 1 cut(s) 1002
FatI CATG 6 cut(s) 709, 778, 847, 970, 996, 1105
FauI CCCGC 4 cut(s) 293, 404, 451, 677
FauNDI CATATG 3 cut(s) 597, 886, 1159
Fnu4HI GCNGC 7 cut(s) 235, 289, 333, 1146, 1218, 1227, 1239
FokI GGATG 3 cut(s) 548, 641, 818
Fsp4HI GCNGC 7 cut(s) 235, 289, 333, 1146, 1218, 1227, 1239
FspBI CTAG 1 cut(s) 1052
GluI GCNGC 7 cut(s) 235, 289, 333, 1146, 1218, 1227, 1239
GsaI CCCAGC 1 cut(s) 894
HaeIII GGCC 5 cut(s) 105, 335, 665, 948, 1169
HapII CCGG 3 cut(s) 102, 738, 753
HgaI GACGC 1 cut(s) 421
Hin1II CATG 6 cut(s) 713, 782, 851, 974, 1000, 1109
HindIII AAGCTT 2 cut(s) 188, 413
HinfI GANTC 3 cut(s) 64, 225, 379
HpaII CCGG 3 cut(s) 102, 738, 753
HphI GGTGA 7 cut(s) 268, 560, 629, 727, 752, 890, 1198
Hpy166II GTNNAC 5 cut(s) 229, 1002, 1067, 1189, 1267
Hpy188I TCNGA 4 cut(s) 186, 224, 872, 1010
Hpy188III TCNNGA 2 cut(s) 302, 573
Hpy8I GTNNAC 5 cut(s) 229, 1002, 1067, 1189, 1267
HpyAV CCTTC 7 cut(s) 24, 117, 172, 270, 608, 953, 968
HpyCH4III ACNGT 1 cut(s) 920
HpyCH4V TGCA 9 cut(s) 152, 359, 517, 916, 1067, 1124, 1163, 1229, 1255
HpyF3I CTNAG 4 cut(s) 221, 438, 447, 1149
Hsp92II CATG 6 cut(s) 713, 782, 851, 974, 1000, 1109
Kzo9I GATC 3 cut(s) 173, 318, 1085
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 3 cut(s) 1132, 1213, 1229
LweI GCATC 1 cut(s) 903
MaeI CTAG 1 cut(s) 1052
MaeIII GTNAC 2 cut(s) 878, 1031
MalI GATC 3 cut(s) 175, 320, 1087
MbiI CCGCTC 3 cut(s) 291, 399, 446
MboI GATC 3 cut(s) 173, 318, 1085
MfeI CAATTG 2 cut(s) 465, 1221
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 2 cut(s) 214, 1069
MlsI TGGCCA 1 cut(s) 1169
MluCI AATT 7 cut(s) 97, 465, 499, 551, 714, 866, 1221
MluNI TGGCCA 1 cut(s) 1169
MlyI GAGTC 2 cut(s) 234, 373
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 9 cut(s) 55, 127, 257, 320, 538, 600, 662, 699, 796
Mox20I TGGCCA 1 cut(s) 1169
MroXI GAANNNNTTC 2 cut(s) 191, 568
MscI TGGCCA 1 cut(s) 1169
MseI TTAA 2 cut(s) 831, 1119
MslI CAYNNNNRTG 3 cut(s) 600, 783, 954
Msp20I TGGCCA 1 cut(s) 1169
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 3 cut(s) 102, 738, 753
MspR9I CCNGG 3 cut(s) 967, 1083, 1130
MunI CAATTG 2 cut(s) 465, 1221
MvaI CCWGG 3 cut(s) 967, 1083, 1130
MvnI CGCG 1 cut(s) 684
NdeI CATATG 3 cut(s) 597, 886, 1159
NdeII GATC 3 cut(s) 173, 318, 1085
NlaIII CATG 6 cut(s) 713, 782, 851, 974, 1000, 1109
NlaIV GGNNCC 1 cut(s) 964
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 878, 1031
NspI RCATGY 1 cut(s) 1000
PaqCI CACCTGC 1 cut(s) 508
PdmI GAANNNNTTC 2 cut(s) 191, 568
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 1128
PinAI ACCGGT 1 cut(s) 737
PkrI GCNGC 7 cut(s) 236, 290, 334, 1147, 1219, 1228, 1240
PleI GAGTC 2 cut(s) 233, 373
PpsI GAGTC 2 cut(s) 233, 373
Psp6I CCWGG 3 cut(s) 965, 1081, 1128
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 3 cut(s) 965, 1081, 1128
PspN4I GGNNCC 1 cut(s) 964
PspPI GGNCC 3 cut(s) 104, 334, 663
PsuI RGATCY 1 cut(s) 1085
PsyI GACNNNGTC 1 cut(s) 855
RsaI GTAC 3 cut(s) 638, 1001, 1266
RsaNI GTAC 3 cut(s) 637, 1000, 1265
RseI CAYNNNNRTG 3 cut(s) 600, 783, 954
SaqAI TTAA 2 cut(s) 831, 1119
SatI GCNGC 7 cut(s) 235, 289, 333, 1146, 1218, 1227, 1239
Sau3AI GATC 3 cut(s) 173, 318, 1085
Sau96I GGNCC 3 cut(s) 104, 334, 663
SchI GAGTC 2 cut(s) 234, 373
ScrFI CCNGG 3 cut(s) 967, 1083, 1130
SduI GDGCHC 2 cut(s) 214, 1069
SfaNI GCATC 1 cut(s) 903
SfcI CTRYAG 1 cut(s) 1197
SgrAI CRCCGGYG 1 cut(s) 737
SmiMI CAYNNNNRTG 3 cut(s) 600, 783, 954
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 7 cut(s) 97, 465, 499, 551, 714, 866, 1221
SspI AATATT 1 cut(s) 899
SspMI CTAG 1 cut(s) 1052
StyD4I CCNGG 3 cut(s) 965, 1081, 1128
TaaI ACNGT 1 cut(s) 920
TaqI TCGA 4 cut(s) 303, 377, 473, 952
TasI AATT 7 cut(s) 97, 465, 499, 551, 714, 866, 1221
TatI WGTACW 2 cut(s) 999, 1264
TauI GCSGC 4 cut(s) 237, 291, 335, 1241
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 831, 1119
Tru9I TTAA 2 cut(s) 831, 1119
TscAI CASTG 7 cut(s) 94, 183, 236, 779, 1040, 1069, 1170
TseFI GTSAC 2 cut(s) 878, 1031
TseI GCWGC 3 cut(s) 1145, 1217, 1226
Tsp45I GTSAC 2 cut(s) 878, 1031
TspDTI ATGAA 5 cut(s) 17, 262, 627, 972, 987
TspRI CASTG 7 cut(s) 94, 183, 236, 779, 1040, 1069, 1170
Tth111I GACNNNGTC 1 cut(s) 855
VneI GTGCAC 1 cut(s) 1065
XapI RAATTY 2 cut(s) 499, 551
XceI RCATGY 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 191, 568
XspI CTAG 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.