Rw7G019740

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002779
Physical Location & Seq
Forward (+)
21958163 .. 21962734
4572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019740.1

Sequence Viewer

Length: 1311 bp
ATGACCCACATACCTTCTTCCCTATCCCACTCTGCTACTCTGTCTTCTCTGCACAATCACTATCATCACAACCATAGTCATTTGAATTCAGGCCCTTCTTCTTCATCATCATCGTCTTCCACTTCTTTTCTCTGCTCTGCTTCGCTGGCAATCATTCCCTTTGCCACAAGGTCACTGCTTCTGAAGCTTTTTCGCCATTTCCGGTGTGCCCATTTGCTCAGAGTCCACTGTCGCTTGATTGTTCTCCTCTTGGTGCCTTCTCTCTACTTCATCACAAGTCCTCGCCGTTCTTTCGTTCTTGATTTCCTCTCTGTGATAGCTTTCTCTGCTGCCATTCTCATTTCTATAAACATTGCACTGCCTCGTTTGGTCTCAATTCGCTTGTTTCTTGCCCGCTCCTTGCCGCTTTGCTCATCTTGTTACACCTCCAAGCTCAACAAGCCTCCTCCTCCGCCTGTGCTCTGGTCAATTGGGTCCAAGCCGAAATCGGAGAAGAGGCCGAACTCTGGGTCCTGGGTGCAGGTTTATAGTAATGGGGATGTTTATGAGGGTGAGTTTGATAAGGGCAAGTGTTCAGGAAGTGGGGTTTATTATTATAATATGAGTGGGAGGTATGAGGGTGATTGGGTGGATGAGAAGTATGATGGTCATGGTGTGGAGACTTGGGCAAGAGGGAGCCGCTATCGCGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACCGGTGATGTTTACGCTGGAGAGTGGTCTAATGGGCAGTGTCATGGGTGTGGAATACATACTTGTGAGGATGGGAGCCGGTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGACTTGGTCATTATCATTTCAGAAACGGAGACACTTATGCTGGGGAATATTTTGCTGACAAGATGCATGGTTTTGGAGTGTATCAGTTTGGAAATGGACATCGTTACGAAGGAGCCTGGCATGAAGGAAGAAAGCAGGGACTTGGTATGTACACTTTCAGAAATGGTGAAACACAATCTGGTCACTGGCAAAATGGGGTTATTGATCCCAGCATGCAGAATACCCATCCTGGATCCTCCTATGCTGTCAACCATGCCAGAGTTCTGAATGCAGTCCAGGAAGCACGGAGAGCTGCTGAGAGAGCATATGAAGTGGCAAAGGTGGATGAAAGAGTGAAGAGAACTATAGCGACAGCTAATAAAGCAGCAAATGCTGCAAGAGTTGCGGCCGTAAAGGCTGTGCAAAAACAAATACACCAGCATAACAATGATGGCACCTCTCCCTCACGACTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MORN

Protein Analysis

436

Amino Acids

48.59

Weight (kDa)

9.56

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 251 - 273 2.1e-06 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 2 cut(s) 253, 1286
AccBSI CCGCTC 1 cut(s) 396
AccII CGCG 1 cut(s) 687
AciI CCGC 6 cut(s) 394, 404, 452, 679, 687, 1238
AclWI GGATC 3 cut(s) 1052, 1080, 1093
AcoI YGGCCR 1 cut(s) 1239
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 1004
AfiI CCNNNNNNNGG 1 cut(s) 506
AgeI ACCGGT 1 cut(s) 740
AgsI TTSAA 2 cut(s) 85, 835
AjnI CCWGG 4 cut(s) 512, 968, 1081, 1128
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 5 cut(s) 187, 320, 433, 1145, 1208
AluI AGCT 5 cut(s) 187, 320, 433, 1145, 1208
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 3 cut(s) 376, 653, 876
AlwI GGATC 3 cut(s) 1052, 1080, 1093
AoxI GGCC 3 cut(s) 91, 497, 1239
ApeKI GCWGC 4 cut(s) 329, 1145, 1217, 1226
ApoI RAATTY 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AsiGI ACCGGT 1 cut(s) 740
AspS9I GGNCC 3 cut(s) 92, 474, 510
AsuHPI GGTGA 5 cut(s) 563, 632, 730, 755, 1031
AvaII GGWCC 2 cut(s) 474, 510
BaeGI GKGCMC 1 cut(s) 211
BamHI GGATCC 1 cut(s) 1085
BanI GGYRCC 2 cut(s) 253, 1286
BarI GAAGNNNNNNTAC 2 cut(s) 719, 751
BbsI GAAGAC 2 cut(s) 36, 108
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 316, 1132, 1213, 1229
BccI CCATC 4 cut(s) 638, 803, 1086, 1277
BceAI ACGGC 2 cut(s) 270, 1226
BciT130I CCWGG 4 cut(s) 514, 970, 1083, 1130
BcoDI GTCTC 3 cut(s) 376, 653, 876
BfaI CTAG 1 cut(s) 1309
BfmI CTRYAG 1 cut(s) 1197
BfuAI ACCTGC 1 cut(s) 511
BglI GCCNNNNNGGC 1 cut(s) 1247
BisI GCNGC 7 cut(s) 330, 404, 679, 1146, 1218, 1227, 1239
BlsI GCNGC 7 cut(s) 331, 405, 680, 1147, 1219, 1228, 1240
Bme1390I CCNGG 4 cut(s) 514, 970, 1083, 1130
Bme18I GGWCC 2 cut(s) 474, 510
BmgT120I GGNCC 3 cut(s) 92, 474, 510
BmiI GGNNCC 8 cut(s) 255, 475, 511, 677, 815, 967, 1087, 1288
BmrFI CCNGG 4 cut(s) 514, 970, 1083, 1130
BmsI GCATC 1 cut(s) 906
BpiI GAAGAC 2 cut(s) 36, 108
BpmI CTGGAG 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 513
BsaWI WCCGGW 2 cut(s) 201, 740
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 2 cut(s) 740, 816
Bse1I ACTGG 1 cut(s) 1043
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 4 cut(s) 514, 970, 1083, 1130
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 5 cut(s) 544, 637, 814, 1078, 1183
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 232, 1140
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 3 cut(s) 236, 435, 438
BseSI GKGCMC 1 cut(s) 211
BseX3I CGGCCG 1 cut(s) 1239
BseXI GCAGC 4 cut(s) 316, 1132, 1213, 1229
BseYI CCCAGC 2 cut(s) 893, 1061
BsgI GTGCAG 2 cut(s) 35, 539
Bsh1236I CGCG 1 cut(s) 687
Bsh1285I CGRYCG 1 cut(s) 1242
BshFI GGCC 3 cut(s) 93, 499, 1241
BshNI GGYRCC 2 cut(s) 253, 1286
BshTI ACCGGT 1 cut(s) 740
BsiEI CGRYCG 1 cut(s) 1242
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 3 cut(s) 202, 741, 817
BslFI GGGAC 1 cut(s) 1005
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 3 cut(s) 376, 653, 876
BsmFI GGGAC 1 cut(s) 1005
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 3 cut(s) 93, 499, 1241
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 211, 462
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 2 cut(s) 1057, 1085
BspACI CCGC 6 cut(s) 394, 404, 452, 679, 687, 1238
BspANI GGCC 3 cut(s) 93, 499, 1241
BspCNI CTCAG 2 cut(s) 231, 1141
BspFNI CGCG 1 cut(s) 687
BspLI GGNNCC 8 cut(s) 255, 475, 511, 677, 815, 967, 1087, 1288
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 3 cut(s) 1052, 1080, 1093
BspT107I GGYRCC 2 cut(s) 253, 1286
BspTNI GGTCTC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 2 cut(s) 740, 816
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 1 cut(s) 1043
BssAI RCCGGY 2 cut(s) 740, 816
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 2 cut(s) 1057, 1085
Bst2UI CCWGG 4 cut(s) 514, 970, 1083, 1130
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 488, 1184
BstAPI GCANNNNNTGC 3 cut(s) 1223, 1226, 1235
BstAUI TGTACA 1 cut(s) 1002
BstC8I GCNNGC 4 cut(s) 147, 394, 689, 1067
BstDEI CTNAG 2 cut(s) 218, 1149
BstF5I GGATG 5 cut(s) 544, 637, 814, 1078, 1183
BstFNI CGCG 1 cut(s) 687
BstKTI GATC 2 cut(s) 1060, 1088
BstMAI GTCTC 3 cut(s) 376, 653, 876
BstMBI GATC 2 cut(s) 1057, 1085
BstMCI CGRYCG 1 cut(s) 1242
BstNI CCWGG 4 cut(s) 514, 970, 1083, 1130
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 4 cut(s) 512, 968, 1081, 1128
BstSFI CTRYAG 1 cut(s) 1197
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 4 cut(s) 316, 1132, 1213, 1229
BstV2I GAAGAC 2 cut(s) 36, 108
BstX2I RGATCY 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 1085
BstZI CGGCCG 1 cut(s) 1239
BsuRI GGCC 3 cut(s) 93, 499, 1241
BtsCI GGATG 5 cut(s) 544, 637, 814, 1078, 1183
BtsI GCAGTG 3 cut(s) 173, 356, 782
BtsIMutI CAGTG 5 cut(s) 173, 226, 356, 782, 1036
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 4 cut(s) 147, 394, 689, 1067
Cfr10I RCCGGY 2 cut(s) 740, 816
Cfr13I GGNCC 3 cut(s) 92, 474, 510
Csp6I GTAC 1 cut(s) 1003
CspAI ACCGGT 1 cut(s) 740
CviAII CATG 8 cut(s) 650, 713, 782, 851, 920, 974, 1066, 1106
CviQI GTAC 1 cut(s) 1003
DdeI CTNAG 2 cut(s) 218, 1149
DpnI GATC 2 cut(s) 1059, 1087
DpnII GATC 2 cut(s) 1057, 1085
EaeI YGGCCR 1 cut(s) 1239
EagI CGGCCG 1 cut(s) 1239
Eam1104I CTCTTC 2 cut(s) 488, 1184
EarI CTCTTC 2 cut(s) 488, 1184
EciI GGCGGA 1 cut(s) 441
EclXI CGGCCG 1 cut(s) 1239
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 474, 510
Eco52I CGGCCG 1 cut(s) 1239
Eco57I CTGAAG 1 cut(s) 203
EcoO109I RGGNCCY 2 cut(s) 92, 510
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 4 cut(s) 512, 968, 1081, 1128
EcoT22I ATGCAT 1 cut(s) 921
FaeI CATG 8 cut(s) 653, 716, 785, 854, 923, 977, 1069, 1109
FaqI GGGAC 1 cut(s) 1005
FatI CATG 8 cut(s) 649, 712, 781, 850, 919, 973, 1065, 1105
FauI CCCGC 2 cut(s) 401, 680
FauNDI CATATG 1 cut(s) 1159
Fnu4HI GCNGC 7 cut(s) 330, 404, 679, 1146, 1218, 1227, 1239
FokI GGATG 5 cut(s) 551, 644, 821, 1065, 1190
Fsp4HI GCNGC 7 cut(s) 330, 404, 679, 1146, 1218, 1227, 1239
FspBI CTAG 1 cut(s) 1309
GluI GCNGC 7 cut(s) 330, 404, 679, 1146, 1218, 1227, 1239
GsaI CCCAGC 2 cut(s) 897, 1065
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 3 cut(s) 93, 499, 1241
HapII CCGG 3 cut(s) 202, 741, 817
Hin1II CATG 8 cut(s) 653, 716, 785, 854, 923, 977, 1069, 1109
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 222, 1302
HpaII CCGG 3 cut(s) 202, 741, 817
HphI GGTGA 5 cut(s) 563, 632, 730, 755, 1031
Hpy166II GTNNAC 4 cut(s) 226, 751, 1005, 1102
Hpy188I TCNGA 6 cut(s) 183, 221, 490, 875, 1013, 1119
Hpy188III TCNNGA 3 cut(s) 299, 576, 1299
Hpy8I GTNNAC 4 cut(s) 226, 751, 1005, 1102
HpyAV CCTTC 5 cut(s) 24, 105, 267, 956, 971
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 8 cut(s) 52, 356, 520, 919, 1069, 1124, 1229, 1255
HpyF3I CTNAG 2 cut(s) 218, 1149
Hsp92II CATG 8 cut(s) 653, 716, 785, 854, 923, 977, 1069, 1109
Kzo9I GATC 2 cut(s) 1057, 1085
LmnI GCTCC 4 cut(s) 401, 675, 813, 965
Lsp1109I GCAGC 4 cut(s) 316, 1132, 1213, 1229
LweI GCATC 1 cut(s) 906
MaeI CTAG 1 cut(s) 1309
MaeIII GTNAC 4 cut(s) 171, 419, 956, 1034
MalI GATC 2 cut(s) 1059, 1087
MbiI CCGCTC 1 cut(s) 396
MboI GATC 2 cut(s) 1057, 1085
MboII GAAGA 9 cut(s) 9, 36, 90, 93, 108, 505, 727, 993, 1201
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 2 cut(s) 211, 462
MluCI AATT 4 cut(s) 85, 375, 468, 717
MlyI GAGTC 2 cut(s) 231, 1296
Mph1103I ATGCAT 1 cut(s) 921
MslI CAYNNNNRTG 3 cut(s) 786, 801, 1278
MspI CCGG 3 cut(s) 202, 741, 817
MspR9I CCNGG 4 cut(s) 514, 970, 1083, 1130
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 4 cut(s) 514, 970, 1083, 1130
MvnI CGCG 1 cut(s) 687
NdeI CATATG 1 cut(s) 1159
NdeII GATC 2 cut(s) 1057, 1085
NlaIII CATG 8 cut(s) 653, 716, 785, 854, 923, 977, 1069, 1109
NlaIV GGNNCC 8 cut(s) 255, 475, 511, 677, 815, 967, 1087, 1288
NmuCI GTSAC 2 cut(s) 171, 1034
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 1 cut(s) 1069
PaeI GCATGC 1 cut(s) 1069
PctI GAATGC 1 cut(s) 1126
PflFI GACNNNGTC 1 cut(s) 858
PfoI TCCNGGA 2 cut(s) 1081, 1128
PinAI ACCGGT 1 cut(s) 740
PkrI GCNGC 7 cut(s) 331, 405, 680, 1147, 1219, 1228, 1240
PleI GAGTC 2 cut(s) 230, 1296
PpsI GAGTC 2 cut(s) 230, 1296
PpuMI RGGWCCY 1 cut(s) 510
PsiI TTATAA 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 510
Psp6I CCWGG 4 cut(s) 512, 968, 1081, 1128
PspFI CCCAGC 2 cut(s) 893, 1061
PspGI CCWGG 4 cut(s) 512, 968, 1081, 1128
PspN4I GGNNCC 8 cut(s) 255, 475, 511, 677, 815, 967, 1087, 1288
PspPI GGNCC 3 cut(s) 92, 474, 510
PspPPI RGGWCCY 1 cut(s) 510
PsuI RGATCY 1 cut(s) 1085
PsyI GACNNNGTC 1 cut(s) 858
RsaI GTAC 1 cut(s) 1004
RsaNI GTAC 1 cut(s) 1003
RseI CAYNNNNRTG 3 cut(s) 786, 801, 1278
SatI GCNGC 7 cut(s) 330, 404, 679, 1146, 1218, 1227, 1239
Sau3AI GATC 2 cut(s) 1057, 1085
Sau96I GGNCC 3 cut(s) 92, 474, 510
SchI GAGTC 2 cut(s) 231, 1296
ScrFI CCNGG 4 cut(s) 514, 970, 1083, 1130
SduI GDGCHC 2 cut(s) 211, 462
SfaNI GCATC 1 cut(s) 906
SfcI CTRYAG 1 cut(s) 1197
SgrAI CRCCGGYG 1 cut(s) 740
SinI GGWCC 2 cut(s) 474, 510
SmiMI CAYNNNNRTG 3 cut(s) 786, 801, 1278
SmlI CTYRAG 1 cut(s) 706
SmoI CTYRAG 1 cut(s) 706
SphI GCATGC 1 cut(s) 1069
Sse9I AATT 4 cut(s) 85, 375, 468, 717
SsiI CCGC 6 cut(s) 394, 404, 452, 679, 687, 1238
SspI AATATT 1 cut(s) 902
SspMI CTAG 1 cut(s) 1309
StyD4I CCNGG 4 cut(s) 512, 968, 1081, 1128
TaaI ACNGT 1 cut(s) 230
TasI AATT 4 cut(s) 85, 375, 468, 717
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 3 cut(s) 406, 681, 1241
TscAI CASTG 5 cut(s) 180, 233, 363, 782, 1043
TseFI GTSAC 2 cut(s) 171, 1034
TseI GCWGC 4 cut(s) 329, 1145, 1217, 1226
Tsp45I GTSAC 2 cut(s) 171, 1034
TspDTI ATGAA 5 cut(s) 93, 259, 990, 1176, 1194
TspGWI ACGGA 2 cut(s) 894, 1153
TspRI CASTG 5 cut(s) 180, 233, 363, 782, 1043
Tth111I GACNNNGTC 1 cut(s) 858
VpaK11BI GGWCC 2 cut(s) 474, 510
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 1069
XspI CTAG 1 cut(s) 1309
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.