Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426337.1

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Forward (+)

300 .. 1181

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426337.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgacccacataccttcttccctatcccactctgctactctgtcttctctgcacaatcactatcatcacaaccatagtcatttgaattcaggcccttcttcttcttcatcatcatcgtcttccacttcttttctctgctctgcttcgctggcaatcattccctttgccacaaggtcactgcttctgaagctttttcgccatttccggtgtgcccatttgctcagagtccactgtcgcttgattgttctcctcttggtgccttctctctacttcatcacaagtcctcgccgttctttcgttcttgatttcctctctgtgatagctttctctgctgccattctcatttctataaacattgcactgcctcgtttggtctcaattcgcttgtttcttgcccgctccttgccgctttgctcatcttgttacacctccaagctcaacaagcctcctcctccgcctgtgctctggtcaattgggtccaagccgaaatcggagaagaggccgaactctgggtcctgggtgcaggtttatagtaatggggatgtttatgagggtgagtttgataagggcaagtgttcaggaagtggggtttattattataatatgagtgggaggtatgagggtgattgggtggatgagaagtatgatggtcatggtgtggagacttgggcaagagggagccgctatcgcgggcagtataggcagggcttgaggcatggaattggggtgtataggttcttcaccggtgatgtttatgccggagagtggtctaatgggcagtgtcatggttgtggaatacatacttgtgaggatgggagccggtatgttggggagttcaagtggggtgtcaaacatggacttggtcattatcatttcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

293

Amino Acids

32.78

Weight (kDa)

9.48

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	1 cut(s)	690
AciI	CCGC	5 cut(s)	397, 407, 455, 682, 690
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	509, 765
AgeI	ACCGGT	1 cut(s)	743
AgsI	TTSAA	2 cut(s)	85, 838
AjnI	CCWGG	1 cut(s)	515
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	3 cut(s)	190, 323, 436
AluI	AGCT	3 cut(s)	190, 323, 436
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	379, 656
AoxI	GGCC	2 cut(s)	91, 500
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AsiGI	ACCGGT	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	92, 477, 513
AsuHPI	GGTGA	4 cut(s)	566, 635, 733, 758
AvaII	GGWCC	2 cut(s)	477, 513
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	2 cut(s)	36, 111
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	641, 806
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	379, 656
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	3 cut(s)	333, 407, 682
BlsI	GCNGC	3 cut(s)	334, 408, 683
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	2 cut(s)	477, 513
BmgT120I	GGNCC	3 cut(s)	92, 477, 513
BmiI	GGNNCC	5 cut(s)	258, 478, 514, 680, 818
BmrFI	CCNGG	1 cut(s)	517
BpiI	GAAGAC	2 cut(s)	36, 111
BpuEI	CTTGAG	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	204, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 765
Bse118I	RCCGGY	2 cut(s)	743, 819
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	547, 640, 817
BseLI	CCNNNNNNNGG	2 cut(s)	509, 765
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	239, 438, 441
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	319
BsgI	GTGCAG	2 cut(s)	35, 542
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	93, 502
BshNI	GGYRCC	1 cut(s)	256
BshTI	ACCGGT	1 cut(s)	743
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	4 cut(s)	205, 744, 759, 820
BslI	CCNNNNNNNGG	2 cut(s)	509, 765
BsmAI	GTCTC	2 cut(s)	379, 656
BsnI	GGCC	2 cut(s)	93, 502
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	214, 465
BspACI	CCGC	5 cut(s)	397, 407, 455, 682, 690
BspANI	GGCC	2 cut(s)	93, 502
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	5 cut(s)	258, 478, 514, 680, 818
BspMI	ACCTGC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	743, 819
BssAI	RCCGGY	2 cut(s)	743, 819
BssECI	CCNNGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	150, 397, 692
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	547, 640, 817
BstFNI	CGCG	1 cut(s)	690
BstMAI	GTCTC	2 cut(s)	379, 656
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 187, 329, 442, 687, 700
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	2 cut(s)	36, 111
BsuRI	GGCC	2 cut(s)	93, 502
BtsCI	GGATG	3 cut(s)	547, 640, 817
BtsI	GCAGTG	3 cut(s)	176, 359, 785
BtsIMutI	CAGTG	4 cut(s)	176, 229, 359, 785
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	150, 397, 692
Cfr10I	RCCGGY	2 cut(s)	743, 819
Cfr13I	GGNCC	3 cut(s)	92, 477, 513
CspAI	ACCGGT	1 cut(s)	743
CviAII	CATG	4 cut(s)	653, 716, 785, 854
DdeI	CTNAG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	477, 513
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	92, 513
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	515
FaeI	CATG	4 cut(s)	656, 719, 788, 857
FatI	CATG	4 cut(s)	652, 715, 784, 853
FauI	CCCGC	2 cut(s)	404, 683
Fnu4HI	GCNGC	3 cut(s)	333, 407, 682
FokI	GGATG	3 cut(s)	554, 647, 824
Fsp4HI	GCNGC	3 cut(s)	333, 407, 682
GluI	GCNGC	3 cut(s)	333, 407, 682
HaeIII	GGCC	2 cut(s)	93, 502
HapII	CCGG	4 cut(s)	205, 744, 759, 820
Hin1II	CATG	4 cut(s)	656, 719, 788, 857
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	4 cut(s)	205, 744, 759, 820
HphI	GGTGA	4 cut(s)	566, 635, 733, 758
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	186, 224, 493
Hpy188III	TCNNGA	2 cut(s)	302, 579
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	24, 105, 270
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	52, 359, 523
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 187, 329, 442, 687, 700
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	656, 719, 788, 857
LmnI	GCTCC	3 cut(s)	404, 678, 816
Lsp1109I	GCAGC	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	174, 422
MbiI	CCGCTC	1 cut(s)	399
MboII	GAAGA	8 cut(s)	9, 36, 90, 93, 96, 111, 508, 730
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	214, 465
MluCI	AATT	4 cut(s)	85, 378, 471, 720
MlyI	GAGTC	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	789, 804
MspI	CCGG	4 cut(s)	205, 744, 759, 820
MspR9I	CCNGG	1 cut(s)	517
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	6 cut(s)	149, 187, 329, 442, 687, 700
NlaIII	CATG	4 cut(s)	656, 719, 788, 857
NlaIV	GGNNCC	5 cut(s)	258, 478, 514, 680, 818
NmuCI	GTSAC	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	861
PinAI	ACCGGT	1 cut(s)	743
PkrI	GCNGC	3 cut(s)	334, 408, 683
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	5 cut(s)	258, 478, 514, 680, 818
PspPI	GGNCC	3 cut(s)	92, 477, 513
PspPPI	RGGWCCY	1 cut(s)	513
PsyI	GACNNNGTC	1 cut(s)	861
RseI	CAYNNNNRTG	2 cut(s)	789, 804
SatI	GCNGC	3 cut(s)	333, 407, 682
Sau96I	GGNCC	3 cut(s)	92, 477, 513
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	214, 465
SgrAI	CRCCGGYG	1 cut(s)	743
SinI	GGWCC	2 cut(s)	477, 513
SmiMI	CAYNNNNRTG	2 cut(s)	789, 804
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	4 cut(s)	85, 378, 471, 720
SsiI	CCGC	5 cut(s)	397, 407, 455, 682, 690
StyD4I	CCNGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	233
TasI	AATT	4 cut(s)	85, 378, 471, 720
TauI	GCSGC	2 cut(s)	409, 684
TscAI	CASTG	4 cut(s)	183, 236, 366, 785
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	96, 262
TspRI	CASTG	4 cut(s)	183, 236, 366, 785
Tth111I	GACNNNGTC	1 cut(s)	861
VpaK11BI	GGWCC	2 cut(s)	477, 513
XapI	RAATTY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.