Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Reverse (-)

4741371 .. 4744192

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAACCAAACACCTTCCAGTTTATCCCACTCTCCCACACTCTCCTCTCTCCACCACCACCAGATTCACTTCCACCGCCATAGCCACACTCCTTTCAATTTCCGCCCTTCTTCTTCTTCTTCCTTTTCTTCTTCGCATTCGTTTCTGTGTTCCGCTTCACTCGCAATCATTCCCTTCGCCACACGATCACTGGTCCTGAAGCTTTTCCGCCATTTCCGCTGTGCGCATTTGCTCAGAGTCCACTGCCGCTTGCTTATCCTCTTCTTTTTGCCTTCCCTTTACTTCTTCACAAGTTCCCGCCGCTCTTTCGTTCTCGATTTCCTGTCTGTGATCGCTTTCTCGGCGGCCCTTTTGATTTCTCTCAACGTTGCACTTCCCCGTTTTGTTTCGACTCGGTTGTCTCTTTCCCGCTCTTTGCCAATCAAGCTTTGTTCGTCTTCCCGCGTCTCTAAGCCCGCTCAGCCTGTTCTTTGGTCAATTGGGTCGAAGCCCAAGTTGGACAAAAAGCCGAATTCGGGGTCTTGGGTGCAGGTTTATAGTAACAAGGATGTTTATGAGGGTGAATTTGATAGAGGGAAGTGTTCAGGAAGTGGGGTTTATTACTATCATATGAGTGGGAGGTATGAAGGTGATTGGGTGGATGAGAAGTATGATGGTTATGGTGTGGAAACTTGGGCCAGAGGTAGCCGGTATCGTGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACTGGTGATGTTTATGCCGGAGAGTGGTCTAATGGGCAGTGTCATGGGTGTGGAATACATACTTGCGAGGATGGAAGCCGGTATGTTGGCGAGTTTAAGTGGGGTGTCAAACATGGACTTGGTCATTATCATTTCAGAAATGGTGACACATATGCTGGGGAATATTTTGCTGACAAGATGCATGGTTTTGGAGTATATCGGTTTGGGAACGGGCATCGATATGAAGGAGCCTGGCATGAAGGAAGAAAGCAGGGACTTGGTATGTACACTTTCAGAAATGGGGAAACACAATCTGGTCATTGGCAAAATGGGGTGCTAGATATAAACAACCAACCTGGATCTTCTTATGCTGCCAACCATGCCAAAGTGCTTAACGCAGTCCAGGAAGCACAAAGAGCTGCTGAGAGAGCATATGAAGTGGCCAAAGTAGATGAAAGGGTGAACCGAGCTGTAGCAATAGCTAATAAAGCAGCGATTGCTGCACGAGTTGCAGCTGTAAAGGCCGTGCAAAAACAATTACACCCATTACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

428

Amino Acids

48.07

Weight (kDa)

9.72

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc16I	TGCGCA	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	520
AccBSI	CCGCTC	3 cut(s)	303, 411, 458
AccII	CGCG	1 cut(s)	444
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	1 cut(s)	1093
AcoI	YGGCCR	1 cut(s)	1167
AcsI	RAATTY	2 cut(s)	511, 563
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	2 cut(s)	515, 771
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	977, 1081, 1128
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	6 cut(s)	202, 427, 1145, 1196, 1208, 1241
AluI	AGCT	6 cut(s)	202, 427, 1145, 1196, 1208, 1241
Alw26I	GTCTC	2 cut(s)	405, 451
AlwI	GGATC	1 cut(s)	1093
AoxI	GGCC	4 cut(s)	345, 675, 1167, 1248
ApeKI	GCWGC	5 cut(s)	1097, 1145, 1217, 1226, 1238
ApoI	RAATTY	2 cut(s)	511, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	193, 346, 675
AsuHPI	GGTGA	5 cut(s)	572, 641, 764, 902, 1198
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	1169
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BauI	CACGAG	1 cut(s)	1230
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	1084, 1132, 1213, 1229, 1250
BccI	CCATC	2 cut(s)	647, 812
BceAI	ACGGC	1 cut(s)	1235
BciT130I	CCWGG	3 cut(s)	979, 1083, 1130
BcoDI	GTCTC	2 cut(s)	405, 451
BfaI	CTAG	1 cut(s)	1064
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	8 cut(s)	247, 301, 345, 1098, 1146, 1218, 1227, 1239
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	8 cut(s)	248, 302, 346, 1099, 1147, 1219, 1228, 1240
Bme1390I	CCNGG	3 cut(s)	979, 1083, 1130
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	193, 346, 675
BmiI	GGNNCC	1 cut(s)	976
BmrFI	CCNGG	3 cut(s)	979, 1083, 1130
BmsI	GCATC	2 cut(s)	915, 970
BpiI	GAAGAC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	964
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 771
Bse118I	RCCGGY	2 cut(s)	687, 825
Bse1I	ACTGG	3 cut(s)	18, 195, 754
BseBI	CCWGG	3 cut(s)	979, 1083, 1130
BseCI	ATCGAT	1 cut(s)	964
BseGI	GGATG	3 cut(s)	553, 646, 823
BseLI	CCNNNNNNNGG	2 cut(s)	515, 771
BseMII	CTCAG	3 cut(s)	247, 473, 1140
BseNI	ACTGG	3 cut(s)	18, 195, 754
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	5 cut(s)	1084, 1132, 1213, 1229, 1250
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	2 cut(s)	548, 1212
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	4 cut(s)	347, 677, 1169, 1250
BshVI	ATCGAT	1 cut(s)	964
BsiSI	CCGG	3 cut(s)	688, 765, 826
BslFI	GGGAC	1 cut(s)	1014
BslI	CCNNNNNNNGG	2 cut(s)	515, 771
BsmAI	GTCTC	2 cut(s)	405, 451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	1014
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	347, 677, 1169, 1250
Bsp1407I	TGTACA	1 cut(s)	1011
Bsp143I	GATC	3 cut(s)	185, 330, 1085
Bsp1720I	GCTNAGC	1 cut(s)	459
BspANI	GGCC	4 cut(s)	347, 677, 1169, 1250
BspCNI	CTCAG	3 cut(s)	246, 472, 1141
BspDI	ATCGAT	1 cut(s)	964
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	976
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	1 cut(s)	1093
BsrBI	CCGCTC	3 cut(s)	303, 411, 458
BsrFI	RCCGGY	2 cut(s)	687, 825
BsrGI	TGTACA	1 cut(s)	1011
BsrI	ACTGG	3 cut(s)	18, 195, 754
BssAI	RCCGGY	2 cut(s)	687, 825
BssMI	GATC	3 cut(s)	185, 330, 1085
BssSI	CACGAG	1 cut(s)	1230
Bst2BI	CACGAG	1 cut(s)	1230
Bst2UI	CCWGG	3 cut(s)	979, 1083, 1130
Bst6I	CTCTTC	1 cut(s)	266
BstAPI	GCANNNNNTGC	2 cut(s)	1223, 1235
BstAUI	TGTACA	1 cut(s)	1011
BstC8I	GCNNGC	2 cut(s)	251, 456
BstDEI	CTNAG	4 cut(s)	233, 450, 459, 1149
BstF5I	GGATG	3 cut(s)	553, 646, 823
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	188, 333, 1088
BstMAI	GTCTC	2 cut(s)	405, 451
BstMBI	GATC	3 cut(s)	185, 330, 1085
BstNI	CCWGG	3 cut(s)	979, 1083, 1130
BstSCI	CCNGG	3 cut(s)	977, 1081, 1128
BstSFI	CTRYAG	1 cut(s)	1197
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	5 cut(s)	1084, 1132, 1213, 1229, 1250
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	964
BsuRI	GGCC	4 cut(s)	347, 677, 1169, 1250
BsuTUI	ATCGAT	1 cut(s)	964
BtsCI	GGATG	3 cut(s)	553, 646, 823
BtsI	GCAGTG	2 cut(s)	241, 791
BtsIMutI	CAGTG	4 cut(s)	188, 241, 747, 791
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	251, 456
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	687, 825
Cfr13I	GGNCC	3 cut(s)	193, 346, 675
ClaI	ATCGAT	1 cut(s)	964
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	1012
CviAII	CATG	6 cut(s)	722, 791, 860, 929, 983, 1106
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	4 cut(s)	233, 450, 459, 1149
DpnI	GATC	3 cut(s)	187, 332, 1087
DpnII	GATC	3 cut(s)	185, 330, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	1167
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	2 cut(s)	92, 197
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	3 cut(s)	977, 1081, 1128
EcoT22I	ATGCAT	1 cut(s)	930
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	725, 794, 863, 932, 986, 1109
FaqI	GGGAC	1 cut(s)	1014
FatI	CATG	6 cut(s)	721, 790, 859, 928, 982, 1105
FauI	CCCGC	4 cut(s)	305, 416, 449, 463
FauNDI	CATATG	3 cut(s)	609, 898, 1159
Fnu4HI	GCNGC	8 cut(s)	247, 301, 345, 1098, 1146, 1218, 1227, 1239
FokI	GGATG	3 cut(s)	560, 653, 830
Fsp4HI	GCNGC	8 cut(s)	247, 301, 345, 1098, 1146, 1218, 1227, 1239
FspAI	RTGCGCAY	1 cut(s)	225
FspBI	CTAG	1 cut(s)	1064
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	8 cut(s)	247, 301, 345, 1098, 1146, 1218, 1227, 1239
GsaI	CCCAGC	1 cut(s)	906
HaeIII	GGCC	4 cut(s)	347, 677, 1169, 1250
HapII	CCGG	3 cut(s)	688, 765, 826
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	6 cut(s)	725, 794, 863, 932, 986, 1109
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HindIII	AAGCTT	2 cut(s)	200, 425
HinfI	GANTC	3 cut(s)	64, 237, 391
HpaII	CCGG	3 cut(s)	688, 765, 826
HphI	GGTGA	5 cut(s)	572, 641, 764, 902, 1198
Hpy166II	GTNNAC	3 cut(s)	241, 1014, 1189
Hpy188I	TCNGA	3 cut(s)	236, 884, 1022
Hpy188III	TCNNGA	3 cut(s)	196, 314, 585
Hpy8I	GTNNAC	3 cut(s)	241, 1014, 1189
HpyAV	CCTTC	7 cut(s)	24, 117, 184, 282, 620, 965, 980
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	6 cut(s)	371, 529, 928, 1229, 1238, 1255
HpyF3I	CTNAG	4 cut(s)	233, 450, 459, 1149
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	6 cut(s)	725, 794, 863, 932, 986, 1109
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	185, 330, 1085
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	5 cut(s)	1084, 1132, 1213, 1229, 1250
LweI	GCATC	2 cut(s)	915, 970
MaeI	CTAG	1 cut(s)	1064
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	539, 890
MalI	GATC	3 cut(s)	187, 332, 1087
MbiI	CCGCTC	3 cut(s)	303, 411, 458
MboI	GATC	3 cut(s)	185, 330, 1085
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	1085
MlsI	TGGCCA	1 cut(s)	1169
MluCI	AATT	6 cut(s)	97, 477, 511, 563, 726, 1262
MluNI	TGGCCA	1 cut(s)	1169
MlyI	GAGTC	2 cut(s)	246, 385
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	8 cut(s)	55, 269, 550, 566, 612, 674, 711, 808
Mox20I	TGGCCA	1 cut(s)	1169
Mph1103I	ATGCAT	1 cut(s)	930
MroXI	GAANNNNTTC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	2 cut(s)	843, 1119
MslI	CAYNNNNRTG	3 cut(s)	612, 795, 966
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	2 cut(s)	219, 1241
MspI	CCGG	3 cut(s)	688, 765, 826
MspR9I	CCNGG	3 cut(s)	979, 1083, 1130
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	3 cut(s)	979, 1083, 1130
MvnI	CGCG	1 cut(s)	444
NdeI	CATATG	3 cut(s)	609, 898, 1159
NdeII	GATC	3 cut(s)	185, 330, 1085
NlaIII	CATG	6 cut(s)	725, 794, 863, 932, 986, 1109
NlaIV	GGNNCC	1 cut(s)	976
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	890
NsbI	TGCGCA	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	930
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	867
PfoI	TCCNGGA	1 cut(s)	1128
PkrI	GCNGC	8 cut(s)	248, 302, 346, 1099, 1147, 1219, 1228, 1240
PleI	GAGTC	2 cut(s)	245, 385
PpsI	GAGTC	2 cut(s)	245, 385
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	977, 1081, 1128
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	3 cut(s)	977, 1081, 1128
PspN4I	GGNNCC	1 cut(s)	976
PspPI	GGNCC	3 cut(s)	193, 346, 675
PsuI	RGATCY	1 cut(s)	1085
PsyI	GACNNNGTC	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
RseI	CAYNNNNRTG	3 cut(s)	612, 795, 966
SaqAI	TTAA	2 cut(s)	843, 1119
SatI	GCNGC	8 cut(s)	247, 301, 345, 1098, 1146, 1218, 1227, 1239
Sau3AI	GATC	3 cut(s)	185, 330, 1085
Sau96I	GGNCC	3 cut(s)	193, 346, 675
SchI	GAGTC	2 cut(s)	246, 385
ScrFI	CCNGG	3 cut(s)	979, 1083, 1130
SfaNI	GCATC	2 cut(s)	915, 970
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	612, 795, 966
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	6 cut(s)	97, 477, 511, 563, 726, 1262
SspI	AATATT	1 cut(s)	911
SspMI	CTAG	1 cut(s)	1064
StyD4I	CCNGG	3 cut(s)	977, 1081, 1128
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	315, 389, 485, 964
TasI	AATT	6 cut(s)	97, 477, 511, 563, 726, 1262
TatI	WGTACW	1 cut(s)	1011
TauI	GCSGC	3 cut(s)	249, 303, 347
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	843, 1119
Tru9I	TTAA	2 cut(s)	843, 1119
TscAI	CASTG	4 cut(s)	195, 248, 754, 791
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	5 cut(s)	1097, 1145, 1217, 1226, 1238
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	6 cut(s)	17, 639, 984, 999, 1176, 1194
TspRI	CASTG	4 cut(s)	195, 248, 754, 791
Tth111I	GACNNNGTC	1 cut(s)	867
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	511, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	1064
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.