MD06G1044700.v1.1

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002779
Physical Location & Seq
Reverse (-)
6111380 .. 6115223
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1044700.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGAACCAAACACCTTCCACTTTATCCCACTCTCCCACACTCTCCTCTCTCCACCACCACCAGATTCACTTCCACCGCCATAGCCACACTCCTTTCAATTTCCGCCCTTCTTCTTCTTCTTCCTCTTCCTCTTCGCATTCGTTTCTGTGTTCCGCTTCACTCGCAATCATTCCCTTCGCCACACGATCACTGGTCCTGAAGCTTTTCCGCCATTTCCCCTGTGCGCATTTGCTCAGAGTCCACTGCCGCTTGCTTATCCTCTTCTTTTTGCCTTCCCTTTACTTCTTCACAAGTTCCCGCCGCTCTTTCGTTCTCGATTTCCTCTCTGTGATCGCTTTCTCGGCGGCCCTTTTGATTTCTCTCAACGTTGCACTTCCCCGTTTTGTTTCGACTCGGTTGTTTCTTTCCCGCTCTTTGCCAATCAAGCTTTGTTCGTCTTCCCGCGTCTCTAAGCCCGCTCAGCCTGTTCTTTGGTCAATTGGGTCGAAGCCCAAGTTGGACAAAAAGCCAAATTCGGGGTCTTGGGTGCAGGTTTATAGTAACAATGATGTTTATGAGGGTGAATTTGATAAAGGGAAGTGTTCAGGAAGTGGGGTTTATTACTATCATATGAGTGGGAGGTATGAAGGTGATTGGGTGGATGAGAAGTATGATGGTTATGGTGTGGAAACTTGGGCCAGAGGTAGCCGGTATCGTGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACTGGTGATGTTTATGCCGGAGAGTGGTCTAATGGGCAGTGTCATGGGTGTGGAATACATACTTGCGAGGATGGAAGCCGGTATGTTGGGGAGTTTAAGTGGGGTGTCAAACATGGACTTGGTCATTATCATTTCAGAAATGGTGACACATATGCTGGGGAATATTTTGCTGACAAGATGCATGGTTTTGGAGTATATCAGTTTGGGAACGGGCATCGATATGAAGGAGCCTGGCATGAAGGAAGAAAGCAAGGACTTGGTATGTACACTTTCAGAAATGGGGAAACACAATCTGGTCATTGGCAAAATGGGGTGCTAGATATTCCCAGTGTGCAAAACACCCAACCTGGATCTTCTTATGCTGCCAACCATGCCAAAGTGTTTAACGCAGTCCAGGAAGCACAGAGAGCTGCTGAGAGAGCATTTGAAGTGGCCAAAGTAGATGAAAGGGTGAACCGAGCTGTAGCAATAGCTAATAAAGCAGCGATTGCTGCACGAGTTGCAGCTGTAAAGGCCGTGCAAAAACAATTACACCCATTACAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MORN

Protein Analysis

432

Amino Acids

48.37

Weight (kDa)

9.6

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 254 - 276 2.1e-06 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 520
AccBSI CCGCTC 3 cut(s) 303, 411, 458
AccII CGCG 1 cut(s) 444
AclI AACGTT 1 cut(s) 366
AclWI GGATC 1 cut(s) 1105
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 2 cut(s) 511, 563
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 1013
AfiI CCNNNNNNNGG 2 cut(s) 515, 771
AgsI TTSAA 2 cut(s) 97, 1175
AjnI CCWGG 3 cut(s) 977, 1093, 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 6 cut(s) 202, 427, 1157, 1208, 1220, 1253
AluI AGCT 6 cut(s) 202, 427, 1157, 1208, 1220, 1253
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 1 cut(s) 1105
AoxI GGCC 4 cut(s) 345, 675, 1179, 1260
ApeKI GCWGC 5 cut(s) 1109, 1157, 1229, 1238, 1250
ApoI RAATTY 2 cut(s) 511, 563
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 193, 346, 675
AsuHPI GGTGA 5 cut(s) 572, 641, 764, 902, 1210
AvaII GGWCC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 1181
BarI GAAGNNNNNNTAC 2 cut(s) 728, 760
BauI CACGAG 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 429
BbvI GCAGC 5 cut(s) 1096, 1144, 1225, 1241, 1262
BccI CCATC 2 cut(s) 647, 812
BceAI ACGGC 1 cut(s) 1247
BciT130I CCWGG 3 cut(s) 979, 1095, 1142
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 1 cut(s) 1064
BfmI CTRYAG 1 cut(s) 1209
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 8 cut(s) 247, 301, 345, 1110, 1158, 1230, 1239, 1251
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 8 cut(s) 248, 302, 346, 1111, 1159, 1231, 1240, 1252
Bme1390I CCNGG 3 cut(s) 979, 1095, 1142
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 193, 346, 675
BmiI GGNNCC 1 cut(s) 976
BmrFI CCNGG 3 cut(s) 979, 1095, 1142
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 2 cut(s) 915, 970
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 736
Bsa29I ATCGAT 1 cut(s) 964
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 771
Bse118I RCCGGY 2 cut(s) 687, 825
Bse1I ACTGG 3 cut(s) 195, 754, 1074
BseBI CCWGG 3 cut(s) 979, 1095, 1142
BseCI ATCGAT 1 cut(s) 964
BseGI GGATG 2 cut(s) 646, 823
BseLI CCNNNNNNNGG 2 cut(s) 515, 771
BseMII CTCAG 3 cut(s) 247, 473, 1152
BseNI ACTGG 3 cut(s) 195, 754, 1074
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 5 cut(s) 1096, 1144, 1225, 1241, 1262
BseYI CCCAGC 1 cut(s) 902
BsgI GTGCAG 2 cut(s) 548, 1224
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 4 cut(s) 347, 677, 1181, 1262
BshVI ATCGAT 1 cut(s) 964
BsiSI CCGG 3 cut(s) 688, 765, 826
BslI CCNNNNNNNGG 2 cut(s) 515, 771
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 4 cut(s) 347, 677, 1181, 1262
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 3 cut(s) 185, 330, 1097
Bsp1720I GCTNAGC 1 cut(s) 459
BspANI GGCC 4 cut(s) 347, 677, 1181, 1262
BspCNI CTCAG 3 cut(s) 246, 472, 1153
BspDI ATCGAT 1 cut(s) 964
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 1105
BsrBI CCGCTC 3 cut(s) 303, 411, 458
BsrFI RCCGGY 2 cut(s) 687, 825
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 3 cut(s) 195, 754, 1074
BssAI RCCGGY 2 cut(s) 687, 825
BssMI GATC 3 cut(s) 185, 330, 1097
BssSI CACGAG 1 cut(s) 1242
Bst2BI CACGAG 1 cut(s) 1242
Bst2UI CCWGG 3 cut(s) 979, 1095, 1142
Bst6I CTCTTC 3 cut(s) 130, 136, 266
BstAPI GCANNNNNTGC 2 cut(s) 1235, 1247
BstAUI TGTACA 1 cut(s) 1011
BstC8I GCNNGC 2 cut(s) 251, 456
BstDEI CTNAG 4 cut(s) 233, 450, 459, 1161
BstF5I GGATG 2 cut(s) 646, 823
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 3 cut(s) 188, 333, 1100
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 3 cut(s) 185, 330, 1097
BstNI CCWGG 3 cut(s) 979, 1095, 1142
BstSCI CCNGG 3 cut(s) 977, 1093, 1140
BstSFI CTRYAG 1 cut(s) 1209
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 5 cut(s) 1096, 1144, 1225, 1241, 1262
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 1097
BstYI RGATCY 1 cut(s) 1097
Bsu15I ATCGAT 1 cut(s) 964
BsuRI GGCC 4 cut(s) 347, 677, 1181, 1262
BsuTUI ATCGAT 1 cut(s) 964
BtsCI GGATG 2 cut(s) 646, 823
BtsI GCAGTG 2 cut(s) 241, 791
BtsIMutI CAGTG 5 cut(s) 188, 241, 747, 791, 1081
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 251, 456
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 2 cut(s) 687, 825
Cfr13I GGNCC 3 cut(s) 193, 346, 675
ClaI ATCGAT 1 cut(s) 964
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 1012
CviAII CATG 6 cut(s) 722, 791, 860, 929, 983, 1118
CviQI GTAC 1 cut(s) 1012
DdeI CTNAG 4 cut(s) 233, 450, 459, 1161
DpnI GATC 3 cut(s) 187, 332, 1099
DpnII GATC 3 cut(s) 185, 330, 1097
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 3 cut(s) 130, 136, 266
EarI CTCTTC 3 cut(s) 130, 136, 266
EciI GGCGGA 2 cut(s) 92, 197
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 977, 1093, 1140
EcoT22I ATGCAT 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 6 cut(s) 725, 794, 863, 932, 986, 1121
FatI CATG 6 cut(s) 721, 790, 859, 928, 982, 1117
FauI CCCGC 4 cut(s) 305, 416, 449, 463
FauNDI CATATG 2 cut(s) 609, 898
Fnu4HI GCNGC 8 cut(s) 247, 301, 345, 1110, 1158, 1230, 1239, 1251
FokI GGATG 2 cut(s) 653, 830
Fsp4HI GCNGC 8 cut(s) 247, 301, 345, 1110, 1158, 1230, 1239, 1251
FspAI RTGCGCAY 1 cut(s) 225
FspBI CTAG 1 cut(s) 1064
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 1 cut(s) 225
GluI GCNGC 8 cut(s) 247, 301, 345, 1110, 1158, 1230, 1239, 1251
GsaI CCCAGC 1 cut(s) 906
HaeIII GGCC 4 cut(s) 347, 677, 1181, 1262
HapII CCGG 3 cut(s) 688, 765, 826
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 226
Hin1II CATG 6 cut(s) 725, 794, 863, 932, 986, 1121
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 2 cut(s) 200, 425
HinfI GANTC 3 cut(s) 64, 237, 391
HpaII CCGG 3 cut(s) 688, 765, 826
HphI GGTGA 5 cut(s) 572, 641, 764, 902, 1210
Hpy166II GTNNAC 3 cut(s) 241, 1014, 1201
Hpy188I TCNGA 3 cut(s) 236, 884, 1022
Hpy188III TCNNGA 3 cut(s) 196, 314, 585
Hpy8I GTNNAC 3 cut(s) 241, 1014, 1201
HpyAV CCTTC 7 cut(s) 24, 117, 184, 282, 620, 965, 980
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 7 cut(s) 371, 529, 928, 1081, 1241, 1250, 1267
HpyF3I CTNAG 4 cut(s) 233, 450, 459, 1161
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 6 cut(s) 725, 794, 863, 932, 986, 1121
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 3 cut(s) 185, 330, 1097
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 5 cut(s) 1096, 1144, 1225, 1241, 1262
LweI GCATC 2 cut(s) 915, 970
MaeI CTAG 1 cut(s) 1064
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 539, 890
MalI GATC 3 cut(s) 187, 332, 1099
MbiI CCGCTC 3 cut(s) 303, 411, 458
MboI GATC 3 cut(s) 185, 330, 1097
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 1097
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 6 cut(s) 97, 477, 511, 563, 726, 1274
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 2 cut(s) 246, 385
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 1181
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 203
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 2 cut(s) 843, 1131
MslI CAYNNNNRTG 3 cut(s) 612, 795, 966
Msp20I TGGCCA 1 cut(s) 1181
MspA1I CMGCKG 1 cut(s) 1253
MspI CCGG 3 cut(s) 688, 765, 826
MspR9I CCNGG 3 cut(s) 979, 1095, 1142
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 3 cut(s) 979, 1095, 1142
MvnI CGCG 1 cut(s) 444
NdeI CATATG 2 cut(s) 609, 898
NdeII GATC 3 cut(s) 185, 330, 1097
NlaIII CATG 6 cut(s) 725, 794, 863, 932, 986, 1121
NlaIV GGNNCC 1 cut(s) 976
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 890
NsbI TGCGCA 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 930
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 867
PfoI TCCNGGA 1 cut(s) 1140
PkrI GCNGC 8 cut(s) 248, 302, 346, 1111, 1159, 1231, 1240, 1252
PleI GAGTC 2 cut(s) 245, 385
PpsI GAGTC 2 cut(s) 245, 385
Psp1406I AACGTT 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 977, 1093, 1140
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 3 cut(s) 977, 1093, 1140
PspN4I GGNNCC 1 cut(s) 976
PspPI GGNCC 3 cut(s) 193, 346, 675
PsuI RGATCY 1 cut(s) 1097
PsyI GACNNNGTC 1 cut(s) 867
PvuII CAGCTG 1 cut(s) 1253
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
RseI CAYNNNNRTG 3 cut(s) 612, 795, 966
SaqAI TTAA 2 cut(s) 843, 1131
SatI GCNGC 8 cut(s) 247, 301, 345, 1110, 1158, 1230, 1239, 1251
Sau3AI GATC 3 cut(s) 185, 330, 1097
Sau96I GGNCC 3 cut(s) 193, 346, 675
SchI GAGTC 2 cut(s) 246, 385
ScrFI CCNGG 3 cut(s) 979, 1095, 1142
SfaNI GCATC 2 cut(s) 915, 970
SfcI CTRYAG 1 cut(s) 1209
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 612, 795, 966
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 6 cut(s) 97, 477, 511, 563, 726, 1274
SspI AATATT 1 cut(s) 911
SspMI CTAG 1 cut(s) 1064
StyD4I CCNGG 3 cut(s) 977, 1093, 1140
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 315, 389, 485, 964
TasI AATT 6 cut(s) 97, 477, 511, 563, 726, 1274
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 3 cut(s) 249, 303, 347
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 843, 1131
Tru9I TTAA 2 cut(s) 843, 1131
TscAI CASTG 5 cut(s) 195, 248, 754, 791, 1081
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 5 cut(s) 1109, 1157, 1229, 1238, 1250
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 5 cut(s) 17, 639, 984, 999, 1206
TspRI CASTG 5 cut(s) 195, 248, 754, 791, 1081
Tth111I GACNNNGTC 1 cut(s) 867
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 511, 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 1064
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.