Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010057.1

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Forward (+)

33317 .. 34300

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010057.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgcatcagaagaaatcagaagctcagatcggaaaagaaagcaccggcctctcttccgatttcaaccccaccataatctcctccccaccaccttcatctctcgcttcaatctcccaccaattctcccatttcgctcactacccatctctaaatgacgccccgattcctcagaccataccctacaagcgtccccttctgacccaaactcactcctctctagtcaaatcccccaccctttacaaactccaacccgcccctcaaaacccacctctcttttccccctccctcgccgccaagtccgccttcttccgcctcctccgccgcgtcaaccgtctccgtcgcctcttcttgctcctctccctcccctttttctacttcctcgtctctcacccgagtcattccttcattctcgacttcctctcagctttcgctttctcatccgcattgctcttctccctcaatctagccctccctcggcttccgtctatccggctttttctggccaggtcgtttccgatcaagctcaagtcgtcggcttcattgtcccggccgccgctgccggtgttctggtcaatcgggtcgcggcagaagccggagaagcgagggatttcggggtgttgggtgcaggtttacagcaacggggacgtgtatgagggtgagtttcataaggggaagtgttccgggagcggggtttattactattatatgagtgggaggtatgagggggattgggtggatgagaagtatgatggatatggtgtagagacttgggctagagggagccggtaccgcgggcagtataggcaggggcttaggcatggtttcggcgtgtataggttttacaccggggatgtttatgccggggaatggtctaatgggcagagtcatgggtgtggagttcatacatgtgaggatgggagtagatatgtaggggaattcaagtggggtgtcaagcatggccttggccactaccatttcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

327

Amino Acids

37.01

Weight (kDa)

9.78

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	3 cut(s)	324, 583, 792
AcoI	YGGCCR	3 cut(s)	501, 548, 964
AcsI	RAATTY	1 cut(s)	935
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
AflIII	ACRYGT	2 cut(s)	645, 905
AgsI	TTSAA	3 cut(s)	64, 108, 940
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	3 cut(s)	23, 425, 523
AluI	AGCT	3 cut(s)	23, 425, 523
Alw26I	GTCTC	3 cut(s)	338, 388, 758
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	5 cut(s)	46, 501, 548, 958, 964
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	1 cut(s)	935
Asp718I	GGTACC	1 cut(s)	786
AsuC2I	CCSGG	4 cut(s)	547, 682, 847, 862
AsuHPI	GGTGA	2 cut(s)	380, 668
AvaI	CYCGRG	1 cut(s)	391
BalI	TGGCCA	2 cut(s)	503, 966
BanI	GGYRCC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	3 cut(s)	151, 743, 908
BciT130I	CCWGG	1 cut(s)	505
BcnI	CCSGG	4 cut(s)	547, 682, 847, 862
BcoDI	GTCTC	3 cut(s)	338, 388, 758
BfaI	CTAG	3 cut(s)	218, 464, 774
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	6 cut(s)	291, 322, 551, 554, 557, 584
BlsI	GCNGC	6 cut(s)	292, 323, 552, 555, 558, 585
Bme1390I	CCNGG	5 cut(s)	505, 547, 682, 847, 862
BmeT110I	CYCGRG	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	782, 788
BmrFI	CCNGG	5 cut(s)	505, 547, 682, 847, 862
BmsI	GCATC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	4 cut(s)	547, 682, 847, 862
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	473, 790, 846, 861, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 687, 867
Bse118I	RCCGGY	3 cut(s)	44, 559, 783
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	5 cut(s)	473, 790, 846, 861, 961
BseGI	GGATG	4 cut(s)	437, 742, 856, 919
BseLI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	3 cut(s)	38, 182, 435
BseRI	GAGGAG	4 cut(s)	70, 202, 305, 344
BseX3I	CGGCCG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	3 cut(s)	324, 583, 792
Bsh1285I	CGRYCG	1 cut(s)	551
BshFI	GGCC	5 cut(s)	48, 503, 550, 960, 966
BshNI	GGYRCC	1 cut(s)	786
BsiEI	CGRYCG	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	9 cut(s)	45, 490, 547, 560, 593, 681, 784, 846, 861
BslFI	GGGAC	3 cut(s)	174, 529, 656
BslI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BsmAI	GTCTC	3 cut(s)	338, 388, 758
BsmBI	CGTCTC	2 cut(s)	338, 388
BsmFI	GGGAC	3 cut(s)	174, 529, 656
BsnI	GGCC	5 cut(s)	48, 503, 550, 960, 966
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	27, 516
BspANI	GGCC	5 cut(s)	48, 503, 550, 960, 966
BspCNI	CTCAG	3 cut(s)	37, 181, 434
BspFNI	CGCG	3 cut(s)	324, 583, 792
BspLI	GGNNCC	2 cut(s)	782, 788
BspMI	ACCTGC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	3 cut(s)	44, 559, 783
BssAI	RCCGGY	3 cut(s)	44, 559, 783
BssECI	CCNNGG	5 cut(s)	473, 790, 846, 861, 961
BssMI	GATC	2 cut(s)	27, 516
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	961
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	3 cut(s)	58, 350, 455
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	794
BstDEI	CTNAG	4 cut(s)	24, 168, 421, 812
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	4 cut(s)	437, 742, 856, 919
BstFNI	CGCG	3 cut(s)	324, 583, 792
BstKTI	GATC	2 cut(s)	30, 519
BstMAI	GTCTC	3 cut(s)	338, 388, 758
BstMBI	GATC	2 cut(s)	27, 516
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 318, 556, 589, 598, 789, 802
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	5 cut(s)	503, 545, 680, 845, 860
BstUI	CGCG	3 cut(s)	324, 583, 792
BstV1I	GCAGC	1 cut(s)	543
BstZI	CGGCCG	1 cut(s)	548
BsuRI	GGCC	5 cut(s)	48, 503, 550, 960, 966
BtgI	CCRYGG	1 cut(s)	790
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	437, 742, 856, 919
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	794
Cfr10I	RCCGGY	3 cut(s)	44, 559, 783
Cfr42I	CCGCGG	1 cut(s)	793
CseI	GACGC	3 cut(s)	164, 176, 313
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	4 cut(s)	818, 887, 906, 956
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	4 cut(s)	24, 168, 421, 812
DpnI	GATC	2 cut(s)	29, 518
DpnII	GATC	2 cut(s)	27, 516
EaeI	YGGCCR	3 cut(s)	501, 548, 964
EagI	CGGCCG	1 cut(s)	548
Eam1104I	CTCTTC	3 cut(s)	58, 350, 455
EarI	CTCTTC	3 cut(s)	58, 350, 455
EciI	GGCGGA	3 cut(s)	289, 299, 308
EclXI	CGGCCG	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	961
Eco52I	CGGCCG	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	961
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	961
Esp3I	CGTCTC	2 cut(s)	338, 388
FaeI	CATG	4 cut(s)	821, 890, 909, 959
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	3 cut(s)	174, 529, 656
FatI	CATG	4 cut(s)	817, 886, 905, 955
FauI	CCCGC	3 cut(s)	259, 680, 785
Fnu4HI	GCNGC	6 cut(s)	291, 322, 551, 554, 557, 584
FokI	GGATG	4 cut(s)	424, 749, 863, 926
Fsp4HI	GCNGC	6 cut(s)	291, 322, 551, 554, 557, 584
FspBI	CTAG	3 cut(s)	218, 464, 774
GluI	GCNGC	6 cut(s)	291, 322, 551, 554, 557, 584
HaeIII	GGCC	5 cut(s)	48, 503, 550, 960, 966
HapII	CCGG	9 cut(s)	45, 490, 547, 560, 593, 681, 784, 846, 861
HgaI	GACGC	3 cut(s)	164, 176, 313
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	821, 890, 909, 959
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	163, 394, 883
HpaII	CCGG	9 cut(s)	45, 490, 547, 560, 593, 681, 784, 846, 861
HphI	GGTGA	2 cut(s)	380, 668
Hpy166II	GTNNAC	2 cut(s)	328, 631
Hpy188I	TCNGA	8 cut(s)	9, 19, 27, 32, 58, 171, 198, 516
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	328, 631
Hpy99I	CGWCG	2 cut(s)	342, 535
HpyAV	CCTTC	4 cut(s)	102, 203, 313, 412
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	2 cut(s)	4, 625
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 318, 556, 589, 598, 789, 802
HpyF3I	CTNAG	4 cut(s)	24, 168, 421, 812
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	821, 890, 909, 959
KpnI	GGTACC	1 cut(s)	790
KspI	CCGCGG	1 cut(s)	793
Kzo9I	GATC	2 cut(s)	27, 516
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	3 cut(s)	357, 684, 780
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	218, 464, 774
MaeII	ACGT	1 cut(s)	645
MalI	GATC	2 cut(s)	29, 518
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	2 cut(s)	27, 516
MboII	GAAGA	5 cut(s)	22, 45, 298, 337, 442
MlsI	TGGCCA	2 cut(s)	503, 966
MluCI	AATT	2 cut(s)	119, 935
MluNI	TGGCCA	2 cut(s)	503, 966
MlyI	GAGTC	2 cut(s)	403, 892
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	2 cut(s)	503, 966
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	503, 966
MslI	CAYNNNNRTG	2 cut(s)	891, 906
Msp20I	TGGCCA	2 cut(s)	503, 966
MspA1I	CMGCKG	2 cut(s)	556, 792
MspI	CCGG	9 cut(s)	45, 490, 547, 560, 593, 681, 784, 846, 861
MspR9I	CCNGG	5 cut(s)	505, 547, 682, 847, 862
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	3 cut(s)	324, 583, 792
MwoI	GCNNNNNNNGC	7 cut(s)	299, 318, 556, 589, 598, 789, 802
NciI	CCSGG	4 cut(s)	547, 682, 847, 862
NdeII	GATC	2 cut(s)	27, 516
NlaIII	CATG	4 cut(s)	821, 890, 909, 959
NlaIV	GGNNCC	2 cut(s)	782, 788
NmeAIII	GCCGAG	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	909
PciI	ACATGT	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	680
PkrI	GCNGC	6 cut(s)	292, 323, 552, 555, 558, 585
PleI	GAGTC	2 cut(s)	402, 891
PpsI	GAGTC	2 cut(s)	402, 891
PscI	ACATGT	1 cut(s)	905
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	782, 788
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	2 cut(s)	891, 906
SacII	CCGCGG	1 cut(s)	793
SapI	GCTCTTC	1 cut(s)	455
SatI	GCNGC	6 cut(s)	291, 322, 551, 554, 557, 584
Sau3AI	GATC	2 cut(s)	27, 516
SchI	GAGTC	2 cut(s)	403, 892
ScrFI	CCNGG	5 cut(s)	505, 547, 682, 847, 862
SfaNI	GCATC	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	793
SgrBI	CCGCGG	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	891, 906
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	2 cut(s)	119, 935
SspMI	CTAG	3 cut(s)	218, 464, 774
StyD4I	CCNGG	5 cut(s)	503, 545, 680, 845, 860
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	411
TasI	AATT	2 cut(s)	119, 935
TauI	GCSGC	5 cut(s)	293, 324, 553, 556, 586
TfiI	GAWTC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	5 cut(s)	84, 394, 528, 653, 890
TspGWI	ACGGA	2 cut(s)	326, 471
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	1 cut(s)	909
XspI	CTAG	3 cut(s)	218, 464, 774
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.