Rorug07G0097700

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
7677188 .. 7679321
2134 bp
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UTR
Exon/CDS
Intron
Rorug07G0097700.1

Sequence Viewer

Length: 360 bp
ATGCCGGAGGAGGATTTGGTGGACATAAAGTTCAGGCTGTACGATGGCTCCGATATAGGGCCGTTCAGCTACTCATCAGCCTCCACAGTCGAGATGCTTAAGCAGAGGGTCGTCTCCGATTGGCCCAAAGGGAAAACGATGATACCCAAGACGTCGAATGAAGTGAAGCTAATGTGTTTTGGTAAAATTTTGGAGAACAACAAGACAGTGGGTCAGTGTAAATTACCTTTTGGTGATGTTGGTGGTGGGGGAGTTATGGTAATGCATGTTGTTGTACAGCCAACTATAGACAAAGCTAAATCAGTTTTTTGTAAGTGTGTATTGCCAATAAAACGAGAGCGACCCATTAGCAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

9.23

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 100 4.6e-36 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 41, 276
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 69, 169, 296
AluI AGCT 3 cut(s) 69, 169, 296
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 59, 122
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 59, 123
AsuHPI GGTGA 1 cut(s) 245
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 98
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 59, 123
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 61, 124
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 61, 124
Bsp1407I TGTACA 1 cut(s) 274
BspANI GGCC 2 cut(s) 61, 124
BspLI GGNNCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 88, 208
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 61, 124
BtsIMutI CAGTG 2 cut(s) 213, 221
Cfr13I GGNCC 2 cut(s) 59, 123
Csp6I GTAC 2 cut(s) 40, 275
CviAII CATG 1 cut(s) 266
CviJI RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviKI_1 RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviQI GTAC 2 cut(s) 40, 275
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 26, 56, 257, 267, 287
FatI CATG 1 cut(s) 265
HaeIII GGCC 2 cut(s) 61, 124
HapII CCGG 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 1 cut(s) 269
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 52, 118
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 269
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 18, 19
LweI GCATC 1 cut(s) 84
MaeII ACGT 1 cut(s) 152
MluCI AATT 2 cut(s) 186, 221
MnlI CCTC 3 cut(s) 4, 91, 99
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 5
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 59, 123
RsaI GTAC 2 cut(s) 41, 276
RsaNI GTAC 2 cut(s) 40, 275
SaqAI TTAA 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 59, 123
SetI ASST 5 cut(s) 71, 155, 171, 229, 298
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 285
SgeI CNNG 7 cut(s) 17, 46, 103, 160, 214, 278, 347
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 186, 221
TaaI ACNGT 2 cut(s) 88, 208
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 90, 155
TasI AATT 2 cut(s) 186, 221
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 213, 221
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 213, 221
Vha464I CTTAAG 1 cut(s) 98
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 269
ZraI GACGTC 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.