Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

17721665 .. 17725661

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G119400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTATAGGGAACGTGGAGGGGGTGGGTCGTCGAAAACGGAGATTGTTGGTGGGCCGCTCGACCGCAAGCGCATCAATGATGCACTGGACAAGCACCTAGAGAAGTCCTCCCCATCCACATCGAGAGCTTTGGCTAATAGTAAAGATAAAGAGAGGCTCTCTGTGCCCTCCACTTCCACTGGTAAATCTCAGCTCGATCATCGTGCTGCCGCTGCCGCTGCGGCCTCGCTCACCAAGAACAAATGCTCTGATGAGGAATCTGAAACAGACAGTGAAGAATCAGACGTCAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATTTGCGAGGAAATGAATTTTTTTGTGAAGTTGATGATGAATACATCCAGGATGATTTTAATCTCTGTGGTTTGAGCAGTCAAGTTCCATATTATGATTACGCACTTGATCTGATTTTGGATGTTGAATCTTCACATGGTGATATGTTCACTGAAGAACAGAATGAGTTGGTTGAATCAGCAGCCGAGATGCTATATGGTCTTATTCATGTTCGATACATACTGACTACCAAAGGAATGTCTGCAATGTTGGAGAAGTACAAAAACTATGACTTTGGAAGATGCCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCAGTTGGTCAATCAGACATTCCTCGTTCAAGCACTGTAAAAATATACTGCCCCAAATGCGAGGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGGGCTTATTTTGGAACAACATTTCCACACCTATTCTTGATGACATATGGGCACCTTAAGCCACAAAAGGCGACGCAGAGTTACGTTCCAAGAGTTTTTGGCTTCAAGCTCCACAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

293

Amino Acids

32.7

Weight (kDa)

5.25

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	807
AccBSI	CCGCTC	1 cut(s)	58
AciI	CCGC	5 cut(s)	56, 64, 210, 216, 221
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	593, 740
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	4 cut(s)	461, 509, 681, 862
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	2 cut(s)	763, 795
AluBI	AGCT	3 cut(s)	128, 193, 865
AluI	AGCT	3 cut(s)	128, 193, 865
AlwI	GGATC	1 cut(s)	726
AoxI	GGCC	2 cut(s)	53, 222
ApeKI	GCWGC	4 cut(s)	206, 212, 218, 515
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	223, 485
BaeGI	GKGCMC	2 cut(s)	168, 810
BanI	GGYRCC	1 cut(s)	807
BbvI	GCAGC	4 cut(s)	193, 199, 205, 527
BccI	CCATC	3 cut(s)	121, 293, 749
BceAI	ACGGC	1 cut(s)	859
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	812
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	8 cut(s)	56, 207, 210, 213, 216, 219, 222, 516
BlsI	GCNGC	8 cut(s)	57, 208, 211, 214, 217, 220, 223, 517
Bme1390I	CCNGG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	809
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	4 cut(s)	70, 81, 513, 605
BplI	GAGNNNNNCTC	4 cut(s)	92, 124, 143, 175
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	742
Bse1I	ACTGG	3 cut(s)	90, 184, 653
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	742
BseGI	GGATG	4 cut(s)	113, 378, 391, 460
BseJI	GATNNNNATC	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	3 cut(s)	90, 184, 653
BseSI	GKGCMC	2 cut(s)	168, 810
BseXI	GCAGC	4 cut(s)	193, 199, 205, 527
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	55, 224
BshNI	GGYRCC	1 cut(s)	807
BsiEI	CGRYCG	1 cut(s)	64
BsnI	GGCC	2 cut(s)	55, 224
Bsp1286I	GDGCHC	2 cut(s)	168, 810
Bsp143I	GATC	3 cut(s)	196, 442, 731
BspACI	CCGC	5 cut(s)	56, 64, 210, 216, 221
BspANI	GGCC	2 cut(s)	55, 224
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	809
BspPI	GGATC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	807
BspTI	CTTAAG	1 cut(s)	812
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	90, 184, 653
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	3 cut(s)	196, 442, 731
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	272, 688
BstACI	GRCGYC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	4 cut(s)	113, 378, 391, 460
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	199, 445, 734
BstMBI	GATC	3 cut(s)	196, 442, 731
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	8 cut(s)	163, 212, 215, 218, 221, 708, 814, 871
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSLI	GKGCMC	2 cut(s)	168, 810
BstV1I	GCAGC	4 cut(s)	193, 199, 205, 527
BsuRI	GGCC	2 cut(s)	55, 224
BtsCI	GGATG	4 cut(s)	113, 378, 391, 460
BtsIMutI	CAGTG	6 cut(s)	83, 177, 277, 295, 483, 684
Cac8I	GCNNGC	1 cut(s)	68
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	2 cut(s)	592, 739
CviAII	CATG	3 cut(s)	324, 470, 542
CviQI	GTAC	2 cut(s)	592, 739
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	198, 444, 733
DpnII	GATC	3 cut(s)	196, 442, 731
DraIII	CACNNNGTG	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	3 cut(s)	327, 473, 545
FatI	CATG	3 cut(s)	323, 469, 541
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	8 cut(s)	56, 207, 210, 213, 216, 219, 222, 516
FokI	GGATG	4 cut(s)	100, 365, 398, 467
Fsp4HI	GCNGC	8 cut(s)	56, 207, 210, 213, 216, 219, 222, 516
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	8 cut(s)	56, 207, 210, 213, 216, 219, 222, 516
HaeIII	GGCC	2 cut(s)	55, 224
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	327, 473, 545
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	4 cut(s)	257, 278, 461, 509
HphI	GGTGA	2 cut(s)	223, 485
Hpy166II	GTNNAC	3 cut(s)	483, 628, 638
Hpy188I	TCNGA	6 cut(s)	250, 262, 283, 298, 447, 667
Hpy188III	TCNNGA	2 cut(s)	123, 793
Hpy8I	GTNNAC	3 cut(s)	483, 628, 638
Hpy99I	CGWCG	2 cut(s)	34, 832
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	2 cut(s)	272, 688
HpyCH4IV	ACGT	3 cut(s)	13, 285, 840
HpyCH4V	TGCA	3 cut(s)	83, 333, 578
HpyF10VI	GCNNNNNNNGC	8 cut(s)	163, 212, 215, 218, 221, 708, 814, 871
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	3 cut(s)	13, 285, 840
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	327, 473, 545
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	196, 442, 731
LmnI	GCTCC	1 cut(s)	870
LpnPI	CCDG	6 cut(s)	71, 165, 368, 395, 658, 666
Lsp1109I	GCAGC	4 cut(s)	193, 199, 205, 527
LweI	GCATC	4 cut(s)	70, 81, 513, 605
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	3 cut(s)	13, 285, 840
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	3 cut(s)	198, 444, 733
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	196, 442, 731
MboII	GAAGA	4 cut(s)	287, 456, 500, 624
MhlI	GDGCHC	2 cut(s)	168, 810
MluCI	AATT	2 cut(s)	334, 350
MmeI	TCCRAC	1 cut(s)	564
MseI	TTAA	2 cut(s)	393, 813
MspA1I	CMGCKG	2 cut(s)	212, 218
MspCI	CTTAAG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	8 cut(s)	163, 212, 215, 218, 221, 708, 814, 871
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	3 cut(s)	196, 442, 731
NlaIII	CATG	3 cut(s)	327, 473, 545
NlaIV	GGNNCC	1 cut(s)	809
NmeAIII	GCCGAG	1 cut(s)	544
PfeI	GAWTC	4 cut(s)	257, 278, 461, 509
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	8 cut(s)	57, 208, 211, 214, 217, 220, 223, 517
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	809
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	593, 740
RsaNI	GTAC	2 cut(s)	592, 739
SaqAI	TTAA	2 cut(s)	393, 813
SatI	GCNGC	8 cut(s)	56, 207, 210, 213, 216, 219, 222, 516
Sau3AI	GATC	3 cut(s)	196, 442, 731
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	168, 810
SetI	ASST	9 cut(s)	16, 99, 130, 195, 288, 789, 813, 843, 867
SfaNI	GCATC	4 cut(s)	70, 81, 513, 605
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	2 cut(s)	334, 350
SsiI	CCGC	5 cut(s)	56, 64, 210, 216, 221
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	2 cut(s)	272, 688
TaiI	ACGT	3 cut(s)	16, 288, 843
TaqI	TCGA	6 cut(s)	32, 60, 122, 195, 547, 730
TasI	AATT	2 cut(s)	334, 350
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	4 cut(s)	58, 212, 218, 224
TfiI	GAWTC	4 cut(s)	257, 278, 461, 509
Tru1I	TTAA	2 cut(s)	393, 813
Tru9I	TTAA	2 cut(s)	393, 813
TscAI	CASTG	6 cut(s)	90, 184, 277, 295, 490, 691
TseI	GCWGC	4 cut(s)	206, 212, 218, 515
TspDTI	ATGAA	4 cut(s)	312, 363, 387, 530
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	6 cut(s)	90, 184, 277, 295, 490, 691
Vha464I	CTTAAG	1 cut(s)	812
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.