Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

22270270 .. 22272173

Gene Structure 1904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTACAAGGAACGTAGTGGAGGAGGTGGTGGTGGGTCATCGAGATCAGAGATCCTCGGTGGAGCTATTGATCGGAAACGAATCAACGATGCACTCAATAAGAAACTAGAGAAATCTTCAACTTCCACCACCACATCTAGGGTTTTCTCTTCTAAAGACAAAGATCCCTTTTCCTTCACATCTACTAAAACTCAGCTTCCTGATGTGGAATCGGAAACTGATAGTGAAGGGTCTGATGTGAGTGGATCGGAGGGTGATGATACGTCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGATTTCTTCTGTGAAGTCGATGAAGATTATATTCAAGATGATTTCAATCTTTGTGGTTTAAGTGGTCAAGTCCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGATGCTTCCAACAGTGAGATGTTTACTGATGAACAGCATGAAATGGTGGAATCAGCTGCTGAGATGCTATATGGTCTTATTCATGTTCGTTACATTTTGACTACTAAAGGAATGGCTGCAATGACTGAGAAGTACAAGAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCTGTTGCGGTCAGTCTTGTCTTCCAGTTGGACAATCCGATATCCCGAGATCGAGTACTGTGAAGATATACTGCCCTAAATGCGAGGATATATCTTACCCGCGATCTAAATTCCAAGGCAATATTGATGGAGCGTACTTTGGAACCACATTCCCTCACTTGTTCTTGATGACTTACGGGAACTTAAAGCCGCAGAAGCCTACTCAAAGCTATGTCCCAAAAATCTTTGGCTTCAAGGTACACAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022414 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042325 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

276

Amino Acids

30.8

Weight (kDa)

5.04

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	89 - 272	3.3e-75	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	682
AciI	CCGC	3 cut(s)	588, 680, 770
AclWI	GGATC	4 cut(s)	46, 158, 253, 278
AcsI	RAATTY	1 cut(s)	689
AfaI	GTAC	5 cut(s)	5, 545, 637, 716, 819
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	4 cut(s)	120, 335, 346, 814
AluBI	AGCT	4 cut(s)	65, 196, 467, 789
AluI	AGCT	4 cut(s)	65, 196, 467, 789
AlwI	GGATC	4 cut(s)	46, 158, 253, 278
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	2 cut(s)	571, 625
ApeKI	GCWGC	2 cut(s)	467, 527
ApoI	RAATTY	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	2 cut(s)	571, 625
BbsI	GAAGAC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	454, 514
BccI	CCATC	1 cut(s)	701
BfaI	CTAG	2 cut(s)	107, 138
BisI	GCNGC	3 cut(s)	468, 528, 770
BlsI	GCNGC	3 cut(s)	469, 529, 771
BmcAI	AGTACT	1 cut(s)	637
BmeT110I	CYCGRG	2 cut(s)	571, 625
BmiI	GGNNCC	1 cut(s)	724
BmsI	GCATC	4 cut(s)	79, 403, 465, 557
BpiI	GAAGAC	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	55, 694
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	55, 694
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	206, 462, 528
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	454, 514
Bsh1236I	CGCG	1 cut(s)	682
BsiHKCI	CYCGRG	2 cut(s)	571, 625
BslFI	GGGAC	2 cut(s)	356, 779
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	356, 779
BsoBI	CYCGRG	2 cut(s)	571, 625
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
BspACI	CCGC	3 cut(s)	588, 680, 770
BspCNI	CTCAG	3 cut(s)	205, 463, 529
BspFNI	CGCG	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	4 cut(s)	46, 158, 253, 278
BsrDI	GCAATG	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	55, 694
BssMI	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
BssT1I	CCWWGG	1 cut(s)	694
Bst4CI	ACNGT	3 cut(s)	425, 554, 640
Bst6I	CTCTTC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	3 cut(s)	192, 471, 537
BstFNI	CGCG	1 cut(s)	682
BstKTI	GATC	9 cut(s)	47, 54, 73, 166, 248, 273, 397, 632, 686
BstMBI	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 775
BstUI	CGCG	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	454, 514
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	3 cut(s)	51, 163, 270
BstYI	RGATCY	3 cut(s)	51, 163, 270
BtsIMutI	CAGTG	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	470
Csp6I	GTAC	5 cut(s)	4, 544, 636, 715, 818
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	449, 494, 828
CviJI	RGCY	8 cut(s)	65, 196, 467, 527, 769, 778, 789, 810
CviKI_1	RGCY	8 cut(s)	65, 196, 467, 527, 769, 778, 789, 810
CviQI	GTAC	5 cut(s)	4, 544, 636, 715, 818
DdeI	CTNAG	3 cut(s)	192, 471, 537
DpnI	GATC	9 cut(s)	46, 53, 72, 165, 247, 272, 396, 631, 685
DpnII	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	622
Eco88I	CYCGRG	2 cut(s)	571, 625
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	452, 497, 831
FaqI	GGGAC	2 cut(s)	356, 779
FatI	CATG	3 cut(s)	448, 493, 827
FauI	CCCGC	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	468, 528, 770
Fsp4HI	GCNGC	3 cut(s)	468, 528, 770
FspBI	CTAG	2 cut(s)	107, 138
GluI	GCNGC	3 cut(s)	468, 528, 770
Hin1II	CATG	3 cut(s)	452, 497, 831
HinfI	GANTC	3 cut(s)	81, 209, 461
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	435, 820
Hpy188I	TCNGA	6 cut(s)	49, 75, 214, 235, 250, 619
Hpy188III	TCNNGA	6 cut(s)	42, 200, 335, 562, 625, 745
Hpy8I	GTNNAC	2 cut(s)	435, 820
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	184, 221
HpyCH4III	ACNGT	3 cut(s)	425, 554, 640
HpyCH4IV	ACGT	2 cut(s)	13, 263
HpyCH4V	TGCA	3 cut(s)	92, 389, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 775
HpyF3I	CTNAG	3 cut(s)	192, 471, 537
HpySE526I	ACGT	2 cut(s)	13, 263
Hsp92II	CATG	3 cut(s)	452, 497, 831
Kzo9I	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
LmnI	GCTCC	2 cut(s)	62, 710
LpnPI	CCDG	2 cut(s)	213, 618
Lsp1109I	GCAGC	2 cut(s)	454, 514
LweI	GCATC	4 cut(s)	79, 403, 465, 557
MaeI	CTAG	2 cut(s)	107, 138
MaeII	ACGT	2 cut(s)	13, 263
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	9 cut(s)	46, 53, 72, 165, 247, 272, 396, 631, 685
MboI	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
MboII	GAAGA	6 cut(s)	108, 141, 298, 335, 593, 655
MflI	RGATCY	3 cut(s)	51, 163, 270
MluCI	AATT	2 cut(s)	286, 689
MmeI	TCCRAC	2 cut(s)	444, 589
MnlI	CCTC	7 cut(s)	14, 17, 65, 244, 287, 658, 744
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	2 cut(s)	359, 764
MspA1I	CMGCKG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	682
MwoI	GCNNNNNNNGC	2 cut(s)	660, 775
NdeII	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
NlaIII	CATG	3 cut(s)	452, 497, 831
NlaIV	GGNNCC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	81, 209, 461
PkrI	GCNGC	3 cut(s)	469, 529, 771
PspN4I	GGNNCC	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	51, 163, 270
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	5 cut(s)	5, 545, 637, 716, 819
RsaNI	GTAC	5 cut(s)	4, 544, 636, 715, 818
SaqAI	TTAA	2 cut(s)	359, 764
SatI	GCNGC	3 cut(s)	468, 528, 770
Sau3AI	GATC	9 cut(s)	44, 51, 70, 163, 245, 270, 394, 629, 683
ScaI	AGTACT	1 cut(s)	637
SetI	ASST	8 cut(s)	16, 28, 67, 198, 266, 469, 791, 819
SfaNI	GCATC	4 cut(s)	79, 403, 465, 557
Sse9I	AATT	2 cut(s)	286, 689
SsiI	CCGC	3 cut(s)	588, 680, 770
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	2 cut(s)	107, 138
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	3 cut(s)	425, 554, 640
TaiI	ACGT	2 cut(s)	16, 266
TaqI	TCGA	3 cut(s)	41, 318, 632
TasI	AATT	2 cut(s)	286, 689
TatI	WGTACW	3 cut(s)	3, 543, 635
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	81, 209, 461
Tru1I	TTAA	2 cut(s)	359, 764
Tru9I	TTAA	2 cut(s)	359, 764
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	2 cut(s)	467, 527
TspDTI	ATGAA	4 cut(s)	336, 456, 465, 482
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	107, 138
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.