Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

18426481 .. 18428397

Gene Structure 1917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTACAAGGATCGGAGTGGAGGAGGAATAATGGGTGGTGGTGGATCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGATGCTTTAGACAAACATCTTAAGAAATCTTCACCTTCTACATCTAGGGTTTTCACTTCTAAGGACAAAGATTCTGTCCCTTCTACTTCAACTGCTAAATCTCAGCTTCATTCTCGTTCCCCCGATGTTGAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGATACCTCTTGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTTTTCTGTGAAGTAGATGAAGATTATATACAAGATGATTTCAATCTCTGTGGTTTGAGTGGTCAAGTTCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACTGAAGAACAGCATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCATGTTCGTTATATTCTCACTACTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATTATGATTTCGGGAGATGCCCCAGAGTTTTCTGTTGCGGACAGTCTTGTCTTCCGGTTGGCCAATCTGATATCCCGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGATATTTACTACCCGCGATCTAAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTACTTTCCCTCATTTGTTTCTCATGGCCTATGGGAACATGAAACCGCAGAAGCCGGCTCAAAACTACGTTCCTAAGATCTTTGGCTTTAAGGTACACAACAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001932 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022414 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042325 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

283

Amino Acids

31.63

Weight (kDa)

5.31

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	95 - 278	8.8e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	615
AccII	CGCG	1 cut(s)	700
AciI	CCGC	3 cut(s)	606, 698, 788
AclWI	GGATC	5 cut(s)	18, 52, 55, 256, 296
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	5, 837
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	186, 227, 364, 431
AluBI	AGCT	4 cut(s)	74, 202, 485, 731
AluI	AGCT	4 cut(s)	74, 202, 485, 731
Alw21I	GWGCWC	1 cut(s)	656
AlwI	GGATC	5 cut(s)	18, 52, 55, 256, 296
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	628, 768
ApeKI	GCWGC	2 cut(s)	485, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AsuHPI	GGTGA	3 cut(s)	120, 284, 455
AvaI	CYCGRG	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	630
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	472, 532
BccI	CCATC	3 cut(s)	466, 547, 719
BfaI	CTAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	2 cut(s)	486, 546
BlsI	GCNGC	2 cut(s)	487, 547
BmeT110I	CYCGRG	1 cut(s)	643
BmsI	GCATC	2 cut(s)	88, 575
BpiI	GAAGAC	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	64, 644, 712
BsaWI	WCCGGW	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	796
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	64, 644, 712
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	212, 480
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	472, 532
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	2 cut(s)	630, 770
BsiHKAI	GWGCWC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	2 cut(s)	623, 797
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	630, 770
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	3 cut(s)	606, 698, 788
BspANI	GGCC	2 cut(s)	630, 770
BspCNI	CTCAG	2 cut(s)	211, 481
BspFNI	CGCG	1 cut(s)	700
BspPI	GGATC	5 cut(s)	18, 52, 55, 256, 296
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	3
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	3 cut(s)	64, 644, 712
BssT1I	CCWWGG	2 cut(s)	64, 712
Bst4CI	ACNGT	2 cut(s)	612, 658
BstAFI	CTTAAG	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	4 cut(s)	156, 198, 489, 816
BstFNI	CGCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	1 cut(s)	678
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	472, 532
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	3 cut(s)	60, 288, 819
BstYI	RGATCY	3 cut(s)	60, 288, 819
BsuRI	GGCC	2 cut(s)	630, 770
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	796
Csp6I	GTAC	2 cut(s)	4, 836
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	5 cut(s)	294, 467, 512, 766, 781
CviQI	GTAC	2 cut(s)	4, 836
DdeI	CTNAG	4 cut(s)	156, 198, 489, 816
DrdI	GACNNNNNNGTC	1 cut(s)	615
DseDI	GACNNNNNNGTC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	64, 712
Eco32I	GATATC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	64, 712
ErhI	CCWWGG	2 cut(s)	64, 712
FaeI	CATG	5 cut(s)	297, 470, 515, 769, 784
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	5 cut(s)	293, 466, 511, 765, 780
FauI	CCCGC	1 cut(s)	705
Fnu4HI	GCNGC	2 cut(s)	486, 546
Fsp4HI	GCNGC	2 cut(s)	486, 546
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	486, 546
HaeIII	GGCC	2 cut(s)	630, 770
HapII	CCGG	2 cut(s)	623, 797
Hin1II	CATG	5 cut(s)	297, 470, 515, 769, 784
HinfI	GANTC	5 cut(s)	90, 167, 227, 431, 479
HpaII	CCGG	2 cut(s)	623, 797
HphI	GGTGA	3 cut(s)	120, 284, 455
Hpy166II	GTNNAC	2 cut(s)	453, 838
Hpy188I	TCNGA	7 cut(s)	15, 58, 84, 232, 253, 268, 637
Hpy188III	TCNNGA	3 cut(s)	51, 580, 643
Hpy8I	GTNNAC	2 cut(s)	453, 838
HpyAV	CCTTC	4 cut(s)	141, 186, 239, 263
HpyCH4III	ACNGT	2 cut(s)	612, 658
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	678
HpyF3I	CTNAG	4 cut(s)	156, 198, 489, 816
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	5 cut(s)	297, 470, 515, 769, 784
KroI	GCCGGC	1 cut(s)	796
KroNI	GCCGGC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	71, 728
LpnPI	CCDG	3 cut(s)	604, 636, 810
Lsp1109I	GCAGC	2 cut(s)	472, 532
LweI	GCATC	2 cut(s)	88, 575
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	810
MboII	GAAGA	5 cut(s)	117, 353, 470, 611, 673
MflI	RGATCY	3 cut(s)	60, 288, 819
MhlI	GDGCHC	1 cut(s)	656
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	2 cut(s)	304, 568
MluNI	TGGCCA	1 cut(s)	630
MnlI	CCTC	7 cut(s)	14, 17, 292, 305, 639, 676, 762
Mox20I	TGGCCA	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	2 cut(s)	117, 831
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	623, 797
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	678
NaeI	GCCGGC	1 cut(s)	798
NgoMIV	GCCGGC	1 cut(s)	796
NlaIII	CATG	5 cut(s)	297, 470, 515, 769, 784
PdiI	GCCGGC	1 cut(s)	798
PfeI	GAWTC	5 cut(s)	90, 167, 227, 431, 479
PkrI	GCNGC	2 cut(s)	487, 547
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	3 cut(s)	60, 288, 819
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	5, 837
RsaNI	GTAC	2 cut(s)	4, 836
SaqAI	TTAA	2 cut(s)	117, 831
SatI	GCNGC	2 cut(s)	486, 546
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	2 cut(s)	88, 575
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	304, 568
SsiI	CCGC	3 cut(s)	606, 698, 788
SspMI	CTAG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	64, 712
TaaI	ACNGT	2 cut(s)	612, 658
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	50, 650
TasI	AATT	2 cut(s)	304, 568
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	5 cut(s)	90, 167, 227, 431, 479
Tru1I	TTAA	2 cut(s)	117, 831
Tru9I	TTAA	2 cut(s)	117, 831
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	2 cut(s)	485, 545
TspDTI	ATGAA	4 cut(s)	194, 354, 500, 797
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	661
Vha464I	CTTAAG	1 cut(s)	116
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.