pycom04g04720

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001417
Physical Location & Seq
Reverse (-)
4360959 .. 4362709
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04720.2

Sequence Viewer

Length: 324 bp
ATGTACAGAGAGCGCGGGGTGGTTGGGTCTAAGACGGCGGAGGTGTTGGGGCCCGCCGTTGATCGGAAGCAGCGGATCAACGACGTCTTGGACAAGCAGCTTGAGCGATTCTCGCCCTCCACTTCTAGGGCAATCAACGGCAAGGACAAGCCGCTTATCATGGGTGGGAAGCAGCCTCCCTCCGATCACAAAGACTCTCGCTCTGCCTCTCTCACCAAAACCAATTGCTCCGATGAGGAATCTGAGACAGACAGTGAAGAGTCAGATGTTAGTGGTTCCGAAGGGGATGACACATCTTGGATCGATCATGGTTTTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

108

Amino Acids

11.68

Weight (kDa)

4.86

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccII CGCG 1 cut(s) 15
AciI CCGC 5 cut(s) 15, 38, 54, 73, 152
AclWI GGATC 2 cut(s) 83, 308
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 63, 126
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 83, 308
AoxI GGCC 1 cut(s) 50
ApaI GGGCCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 70, 97, 172
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 50, 51
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 82, 109, 184
BceAI ACGGC 3 cut(s) 41, 51, 154
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 126
BisI GCNGC 4 cut(s) 71, 98, 152, 173
BlsI GCNGC 4 cut(s) 72, 99, 153, 174
BmgT120I GGNCC 2 cut(s) 50, 51
BmiI GGNNCC 3 cut(s) 51, 52, 277
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 126
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 63, 126
BseMII CTCAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 3 cut(s) 82, 109, 184
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 63, 126
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 1 cut(s) 52
Bsp120I GGGCCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 61, 75, 184, 300, 304
BspACI CCGC 5 cut(s) 15, 38, 54, 73, 152
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 51, 52, 277
BspPI GGATC 2 cut(s) 83, 308
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 5 cut(s) 61, 75, 184, 300, 304
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 30, 243
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 5 cut(s) 64, 78, 187, 303, 307
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 5 cut(s) 61, 75, 184, 300, 304
BstMWI GCNNNNNNNGC 2 cut(s) 103, 112
BstSLI GKGCMC 1 cut(s) 54
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 82, 109, 184
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 1 cut(s) 52
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 50, 51
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 160, 308
CviJI RGCY 4 cut(s) 52, 100, 151, 175
CviKI_1 RGCY 4 cut(s) 52, 100, 151, 175
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 30, 243
DpnI GATC 5 cut(s) 63, 77, 186, 302, 306
DpnII GATC 5 cut(s) 61, 75, 184, 300, 304
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 2 cut(s) 163, 311
FaiI YATR 2 cut(s) 161, 309
FatI CATG 2 cut(s) 159, 307
FauI CCCGC 2 cut(s) 8, 61
Fnu4HI GCNGC 4 cut(s) 71, 98, 152, 173
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 4 cut(s) 71, 98, 152, 173
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 14
GluI GCNGC 4 cut(s) 71, 98, 152, 173
HaeIII GGCC 1 cut(s) 52
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 163, 311
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 4 cut(s) 108, 194, 239, 260
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 6 cut(s) 66, 184, 232, 244, 265, 280
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 112
HpyF3I CTNAG 2 cut(s) 30, 243
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 163, 311
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 5 cut(s) 61, 75, 184, 300, 304
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 3 cut(s) 82, 109, 184
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 84
MalI GATC 5 cut(s) 63, 77, 186, 302, 306
MboI GATC 5 cut(s) 61, 75, 184, 300, 304
MboII GAAGA 1 cut(s) 269
MfeI CAATTG 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 223, 318
MlyI GAGTC 2 cut(s) 188, 269
MnlI CCTC 6 cut(s) 34, 127, 186, 190, 217, 229
MspA1I CMGCKG 1 cut(s) 73
MunI CAATTG 1 cut(s) 223
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 103, 112
NdeII GATC 5 cut(s) 61, 75, 184, 300, 304
NlaIII CATG 2 cut(s) 163, 311
NlaIV GGNNCC 3 cut(s) 51, 52, 277
PfeI GAWTC 2 cut(s) 108, 239
PkrI GCNGC 4 cut(s) 72, 99, 153, 174
PleI GAGTC 2 cut(s) 188, 268
PpsI GAGTC 2 cut(s) 188, 268
PspN4I GGNNCC 3 cut(s) 51, 52, 277
PspOMI GGGCCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 50, 51
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 4 cut(s) 71, 98, 152, 173
Sau3AI GATC 5 cut(s) 61, 75, 184, 300, 304
Sau96I GGNCC 2 cut(s) 50, 51
SchI GAGTC 2 cut(s) 188, 269
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 45, 87, 102
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 223, 318
SsiI CCGC 5 cut(s) 15, 38, 54, 73, 152
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 303
TasI AATT 2 cut(s) 223, 318
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 108, 239
TscAI CASTG 1 cut(s) 259
TseI GCWGC 3 cut(s) 70, 97, 172
TspRI CASTG 1 cut(s) 259
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.