Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Forward (+)

16825585 .. 16829139

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g18690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTATAGGGAACGTGGCGGTGGAGGCGTTGGCGGGTCATCGAAAACAGAGATTGTTGGTGGCAATGATGCGCTGGACAAGCACCTAGTGAATTCCTCCACTTCCACATCGAGAGCTTTGGCTAACAGTAAAGACAAAGAGAAGCTCTCTGTGCCCTCCACTTCCGCTGGTAAATCTCAACTCGATCACCGTGCTGCTGCCGCCGCGGCCGCCTCGCTCACCGAGAACAAATGCTCTGATGAGGAATCTGAAACAGACAGTGAAGAATCAGATGTCAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATTTGCGAGGAAATGAATTTTTTTGTGAAGTGGATGATGAATATATCCAAGATGATTTTAATCTCTGCGGTTTGAGCAGTCAAGTTCCATATTATGATTATGCACTTGATCTGATTTTGGATGTTGAATCTTCTCATGGTGACATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCAGCAGCGGAGATGCTATACGGTCTTATACATGTTCGATACATACTGACTAGCAAGGGAATGTCTGCAATGTTGGAGAAATACAAGAACTATGACTTTGGAAGATGCCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCAGTTGGTCAATCGGACATTCCTCGTTCAAGCACTGTAAAAATATACTGCCCCAAATGCGAAGATATATATTATGATCGATCGAAGTACCAAGGCAATATTGATGGAGCATATTTTGGAACGACATTTCCGCACTTGTTCTTGATGACGTATGGGCACCTTAAGCCACAAAAGGCGTCACAGAGTTACGTGCCAAGAGTTTTTGGTTTCAAGCTCCACAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

289

Amino Acids

31.92

Weight (kDa)

4.87

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	795
AccII	CGCG	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	91, 338
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	815
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	728
AflII	CTTAAG	1 cut(s)	800
AflIII	ACRYGT	2 cut(s)	465, 529
AgsI	TTSAA	4 cut(s)	449, 497, 669, 850
AloI	GAACNNNNNNTCC	2 cut(s)	751, 783
AluBI	AGCT	3 cut(s)	116, 145, 853
AluI	AGCT	3 cut(s)	116, 145, 853
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	194, 197, 503
ApoI	RAATTY	2 cut(s)	91, 338
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	179, 211, 473
BaeGI	GKGCMC	2 cut(s)	156, 798
BanI	GGYRCC	1 cut(s)	795
BbvI	GCAGC	3 cut(s)	181, 184, 515
BccI	CCATC	2 cut(s)	281, 737
BceAI	ACGGC	1 cut(s)	847
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BfaI	CTAG	2 cut(s)	86, 549
BfrI	CTTAAG	1 cut(s)	800
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	7 cut(s)	195, 198, 201, 204, 207, 210, 504
BlsI	GCNGC	7 cut(s)	196, 199, 202, 205, 208, 211, 505
BmiI	GGNNCC	1 cut(s)	797
BmsI	GCATC	3 cut(s)	58, 501, 593
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bsa29I	ATCGAT	1 cut(s)	718
BsaAI	YACGTR	1 cut(s)	829
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	204, 730
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	2 cut(s)	70, 573
Bse8I	GATNNNNATC	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	204, 730
BseGI	GGATG	2 cut(s)	361, 448
BseJI	GATNNNNATC	1 cut(s)	381
BseMI	GCAATG	2 cut(s)	70, 573
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	2 cut(s)	156, 798
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	181, 184, 515
Bsh1236I	CGCG	1 cut(s)	206
Bsh1285I	CGRYCG	2 cut(s)	210, 722
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	795
BshVI	ATCGAT	1 cut(s)	718
BsiEI	CGRYCG	2 cut(s)	210, 722
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	156, 798
Bsp143I	GATC	4 cut(s)	184, 430, 715, 719
BspANI	GGCC	1 cut(s)	209
BspDI	ATCGAT	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	797
BspQI	GCTCTTC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	2 cut(s)	70, 573
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	204, 730
BssMI	GATC	4 cut(s)	184, 430, 715, 719
BssNI	GRCGYC	1 cut(s)	815
BssT1I	CCWWGG	1 cut(s)	730
Bst4CI	ACNGT	5 cut(s)	128, 191, 260, 521, 676
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	800
BstBAI	YACGTR	1 cut(s)	829
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	361, 448
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	187, 433, 718, 722
BstMBI	GATC	4 cut(s)	184, 430, 715, 719
BstMCI	CGRYCG	2 cut(s)	210, 722
BstNSI	RCATGY	2 cut(s)	469, 533
BstSLI	GKGCMC	2 cut(s)	156, 798
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	181, 184, 515
BstZI	CGGCCG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	718
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	361, 448
BtsIMutI	CAGTG	4 cut(s)	265, 283, 471, 672
CciNI	GCGGCCGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	718
CseI	GACGC	1 cut(s)	804
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	4 cut(s)	312, 458, 466, 530
CviJI	RGCY	7 cut(s)	116, 122, 145, 209, 805, 853, 862
CviKI_1	RGCY	7 cut(s)	116, 122, 145, 209, 805, 853, 862
CviQI	GTAC	1 cut(s)	727
DpnI	GATC	4 cut(s)	186, 432, 717, 721
DpnII	GATC	4 cut(s)	184, 430, 715, 719
DraIII	CACNNNGTG	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	730
Eco52I	CGGCCG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	4 cut(s)	315, 461, 469, 533
FatI	CATG	4 cut(s)	311, 457, 465, 529
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	7 cut(s)	195, 198, 201, 204, 207, 210, 504
FokI	GGATG	2 cut(s)	368, 455
Fsp4HI	GCNGC	7 cut(s)	195, 198, 201, 204, 207, 210, 504
FspBI	CTAG	2 cut(s)	86, 549
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	7 cut(s)	195, 198, 201, 204, 207, 210, 504
HaeIII	GGCC	1 cut(s)	209
HgaI	GACGC	1 cut(s)	804
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	4 cut(s)	315, 461, 469, 533
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	245, 266, 449, 497
HphI	GGTGA	3 cut(s)	179, 211, 473
Hpy166II	GTNNAC	3 cut(s)	471, 616, 626
Hpy188I	TCNGA	6 cut(s)	238, 250, 271, 286, 435, 655
Hpy188III	TCNNGA	2 cut(s)	111, 781
Hpy8I	GTNNAC	3 cut(s)	471, 616, 626
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	5 cut(s)	128, 191, 260, 521, 676
HpyCH4IV	ACGT	3 cut(s)	13, 788, 828
HpyCH4V	TGCA	3 cut(s)	321, 425, 566
HpySE526I	ACGT	3 cut(s)	13, 788, 828
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	4 cut(s)	315, 461, 469, 533
HspAI	GCGC	1 cut(s)	71
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	184, 430, 715, 719
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	746, 858
LpnPI	CCDG	4 cut(s)	59, 153, 646, 654
Lsp1109I	GCAGC	3 cut(s)	181, 184, 515
LweI	GCATC	3 cut(s)	58, 501, 593
MaeI	CTAG	2 cut(s)	86, 549
MaeII	ACGT	3 cut(s)	13, 788, 828
MaeIII	GTNAC	3 cut(s)	461, 816, 824
MalI	GATC	4 cut(s)	186, 432, 717, 721
MboI	GATC	4 cut(s)	184, 430, 715, 719
MboII	GAAGA	5 cut(s)	275, 444, 488, 612, 713
MhlI	GDGCHC	2 cut(s)	156, 798
MluCI	AATT	3 cut(s)	91, 322, 338
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	7 cut(s)	17, 106, 166, 223, 235, 323, 672
MseI	TTAA	2 cut(s)	381, 801
MspA1I	CMGCKG	3 cut(s)	167, 206, 506
MspCI	CTTAAG	1 cut(s)	800
MvnI	CGCG	1 cut(s)	206
NdeII	GATC	4 cut(s)	184, 430, 715, 719
NlaIII	CATG	4 cut(s)	315, 461, 469, 533
NlaIV	GGNNCC	1 cut(s)	797
NmuCI	GTSAC	2 cut(s)	461, 816
NotI	GCGGCCGC	1 cut(s)	207
NspI	RCATGY	2 cut(s)	469, 533
PciI	ACATGT	2 cut(s)	465, 529
PciSI	GCTCTTC	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	245, 266, 449, 497
PkrI	GCNGC	7 cut(s)	196, 199, 202, 205, 208, 211, 505
Ple19I	CGATCG	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	829
PscI	ACATGT	2 cut(s)	465, 529
PspN4I	GGNNCC	1 cut(s)	797
PvuI	CGATCG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SacII	CCGCGG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	381, 801
SatI	GCNGC	7 cut(s)	195, 198, 201, 204, 207, 210, 504
Sau3AI	GATC	4 cut(s)	184, 430, 715, 719
SduI	GDGCHC	2 cut(s)	156, 798
SetI	ASST	8 cut(s)	16, 87, 118, 147, 791, 801, 831, 855
SfaNI	GCATC	3 cut(s)	58, 501, 593
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	3 cut(s)	91, 322, 338
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	86, 549
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	5 cut(s)	128, 191, 260, 521, 676
TaiI	ACGT	3 cut(s)	16, 791, 831
TaqI	TCGA	6 cut(s)	41, 110, 183, 535, 718, 722
TasI	AATT	3 cut(s)	91, 322, 338
TauI	GCSGC	4 cut(s)	203, 206, 209, 212
TfiI	GAWTC	4 cut(s)	245, 266, 449, 497
Tru1I	TTAA	2 cut(s)	381, 801
Tru9I	TTAA	2 cut(s)	381, 801
TscAI	CASTG	4 cut(s)	265, 283, 478, 679
TseFI	GTSAC	2 cut(s)	461, 816
TseI	GCWGC	3 cut(s)	194, 197, 503
Tsp45I	GTSAC	2 cut(s)	461, 816
TspDTI	ATGAA	3 cut(s)	300, 351, 375
TspRI	CASTG	4 cut(s)	265, 283, 478, 679
Vha464I	CTTAAG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	91, 338
XceI	RCATGY	2 cut(s)	469, 533
XspI	CTAG	2 cut(s)	86, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.