Rw1G008730

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001417
Physical Location & Seq
Forward (+)
19039670 .. 19040083
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008730.1

Sequence Viewer

Length: 321 bp
ATGTTTACGGAAGAACAAAATGAATTAATTGAATCAGCAGCGGAGATGCTCTATGGTCTGATTCATGTACGATATATTTTGACCAGCAAGGGCATGGCTGCCATGCTAGACAAATACAAAAACTATGATTTCGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGGTAGTATCCTTTGTATTTATAATTCTGCATTTGAAACTGCTGGCTGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

6.54

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 3 - 90 4e-36 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AciI CCGC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 181
AfaI GTAC 2 cut(s) 69, 152
AgsI TTSAA 2 cut(s) 32, 302
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 38, 98, 312
AseI ATTAAT 1 cut(s) 26
BalI TGGCCA 1 cut(s) 183
BbvI GCAGC 3 cut(s) 50, 85, 299
BciVI GTATCC 1 cut(s) 284
BfaI CTAG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 3 cut(s) 39, 99, 313
BlsI GCNGC 3 cut(s) 40, 100, 314
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 50, 85, 299
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 257
BsnI GGCC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 201, 211
BstC8I GCNNGC 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BstMCI CGRYCG 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 50, 85, 299
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 68, 151
CviAII CATG 3 cut(s) 65, 94, 103
CviJI RGCY 3 cut(s) 98, 183, 312
CviKI_1 RGCY 3 cut(s) 98, 183, 312
CviQI GTAC 2 cut(s) 68, 151
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 181
Eco32I GATATC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 241
FaeI CATG 3 cut(s) 68, 97, 106
FaiI YATR 9 cut(s) 54, 66, 75, 95, 104, 126, 220, 288, 319
FatI CATG 3 cut(s) 64, 93, 102
Fnu4HI GCNGC 3 cut(s) 39, 99, 313
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 39, 99, 313
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 39, 99, 313
HaeIII GGCC 1 cut(s) 183
Hin1II CATG 3 cut(s) 68, 97, 106
HinfI GANTC 2 cut(s) 32, 61
Hpy166II GTNNAC 3 cut(s) 6, 151, 161
Hpy188I TCNGA 2 cut(s) 60, 190
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 3 cut(s) 6, 151, 161
HpyCH4III ACNGT 2 cut(s) 201, 211
HpyCH4V TGCA 1 cut(s) 296
Hsp92II CATG 3 cut(s) 68, 97, 106
Kzo9I GATC 1 cut(s) 254
LpnPI CCDG 4 cut(s) 97, 181, 189, 294
Lsp1109I GCAGC 3 cut(s) 50, 85, 299
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 23, 248
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 3 cut(s) 23, 27, 289
MluNI TGGCCA 1 cut(s) 183
MnlI CCTC 2 cut(s) 182, 261
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 41
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 68, 97, 106
PfeI GAWTC 2 cut(s) 32, 61
PkrI GCNGC 3 cut(s) 40, 100, 314
Ple19I CGATCG 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 26
PsiI TTATAA 1 cut(s) 288
PvuI CGATCG 1 cut(s) 257
RsaI GTAC 2 cut(s) 69, 152
RsaNI GTAC 2 cut(s) 68, 151
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 3 cut(s) 39, 99, 313
Sau3AI GATC 1 cut(s) 254
SetI ASST 1 cut(s) 271
SfaNI GCATC 1 cut(s) 36
Sse9I AATT 3 cut(s) 23, 27, 289
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 201, 211
TaqI TCGA 2 cut(s) 253, 257
TasI AATT 3 cut(s) 23, 27, 289
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 2 cut(s) 32, 61
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 214
TseI GCWGC 3 cut(s) 38, 98, 312
TspDTI ATGAA 2 cut(s) 36, 53
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 214
VspI ATTAAT 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.