Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

23833065 .. 23834180

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0175200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATCATCAATACTACACTGGGTGGAAACAAAAAAGTCAAGTCTTTAAAGAGTAATGGGTTTGGAAACGGTGCGTTTCAGCCGGAAATGGAGGTGGAGAAAAGTACCGACGTCGTCATTGTCGGTGCCGGAGTTGCTGGTGCTGCTCTTGCTTACACTCTTGCCAAGGAAGGATGTCACGTACACGTCATCGAAAGAGACTTGAGTGAGCCAGATAGAATTGTTGGTGAGTTGTTGCAGCCTGGAGGTTATCTCAAGTTGATTGAGTTGGGTCTTGAGGAGTGTGCAAATGAGTCAATTGATGCTCAGAAGGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAAAGCTGACTTATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

122

Amino Acids

13.06

Weight (kDa)

5.15

Isoelectric Point (pI)

25.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thi4	PF01946	35 - 69	1.5e-06	Thi4 family
FAD_binding_3	PF01494	36 - 113	2.2e-07	FAD binding domain
DAO	PF01266	37 - 67	3.1e-08	FAD dependent oxidoreductase
Pyr_redox_2	PF07992	37 - 66	6.2e-06	Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8	PF13450	40 - 66	3.5e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	106, 183
AflIII	ACRYGT	1 cut(s)	184
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	143, 238
AsuHPI	GGTGA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	130, 250
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	2 cut(s)	144, 239
BlsI	GCNGC	2 cut(s)	145, 240
Bme1390I	CCNGG	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	3 cut(s)	223, 239, 296
BsaAI	YACGTR	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	130, 250
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	83, 129
BsmAI	GTCTC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 143, 149
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	130, 250
BsuI	GTATCC	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	105, 182
CviJI	RGCY	4 cut(s)	82, 211, 241, 355
CviKI_1	RGCY	4 cut(s)	82, 211, 241, 355
CviQI	GTAC	2 cut(s)	105, 182
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaiI	YATR	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	144, 239
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	144, 239
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	2 cut(s)	144, 239
GsuI	CTGGAG	1 cut(s)	264
HapII	CCGG	2 cut(s)	83, 129
Hin1I	GRCGYC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	83, 129
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	113, 116
HpyAV	CCTTC	3 cut(s)	164, 304, 337
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	3 cut(s)	111, 180, 186
HpyCH4V	TGCA	2 cut(s)	238, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 143, 149
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	111, 180, 186
Hsp92I	GRCGYC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	7 cut(s)	5, 96, 123, 142, 225, 228, 255
Lsp1109I	GCAGC	2 cut(s)	130, 250
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	367
MaeII	ACGT	3 cut(s)	111, 180, 186
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	297
MluCI	AATT	2 cut(s)	219, 297
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	85, 239, 271
MseI	TTAA	1 cut(s)	47
MspI	CCGG	2 cut(s)	83, 129
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	134, 143, 149
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	145, 240
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	106, 183
RsaNI	GTAC	2 cut(s)	105, 182
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	144, 239
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	7 cut(s)	96, 114, 183, 189, 250, 315, 357
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	3 cut(s)	202, 254, 275
SmoI	CTYRAG	3 cut(s)	202, 254, 275
Sse9I	AATT	2 cut(s)	219, 297
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	3 cut(s)	114, 183, 189
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	219, 297
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	143, 238
Tsp45I	GTSAC	1 cut(s)	176
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	367
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.