Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Forward (+)

12287677 .. 12291925

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20700.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTATAGGGAGCGAGGTTCGGGTGGGTCGAAGATGACGGAGGCGGCGGCGGTTGATCGGAAGCGGATCAACGAGGCGTTGGATAAGCATCTGGAGCGATCGTCGCCGTCGACTTCTAGGGCGGCAATCAACGGCAAGGAGAACAGTGGTAGTAACAAGCCTCTTATCATGGGGGAGGAATCTGAAACAGATAGCGAAGAGTCAGATGTTAGTGGTTCAGATGGGGATGACACATCTTGGATATCATGGTTTTGCAATTTGAGAGGAAATGAGTTTTTTTGTGAAGTTGATGATGATTATATACAAGATGATTTCAACCTTTGTGGGCTAAGCAGCCAAGTTCCCTATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCATCTCATGGTGATATGTTCACGGAAGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTCTATGGTCTGATTCATGTACGGTATATTTTGACAAGCAAAGGCATGGCTGCCATGCTAGATAAATACAAGAACTATGATTTCGGAAGATGCCCAAGAGTGTACTGCTGCGGACAACCCTGCCTTCCAGTTGGCCAATCGGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTGTTCGGCTTCAAGCTTCACAAGCCATGATGCCAAAATTTCAAGCTTCATCTGGGGTCCATACACGACTTCCTTCCCTCTGTCAACAAGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

266

Amino Acids

29.61

Weight (kDa)

4.76

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	103 - 286	6.1e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	6 cut(s)	44, 47, 50, 64, 122, 558
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	737
AfaI	GTAC	2 cut(s)	468, 551
AgsI	TTSAA	4 cut(s)	316, 431, 713, 743
AluBI	AGCT	3 cut(s)	688, 716, 746
AluI	AGCT	3 cut(s)	688, 716, 746
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	4 cut(s)	333, 437, 497, 555
ApoI	RAATTY	1 cut(s)	737
AseI	ATTAAT	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	345, 449, 484, 542
BccI	CCATC	2 cut(s)	215, 686
BceAI	ACGGC	2 cut(s)	91, 148
BfaI	CTAG	2 cut(s)	117, 506
BisI	GCNGC	7 cut(s)	45, 48, 123, 334, 438, 498, 556
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	7 cut(s)	46, 49, 124, 335, 439, 499, 557
Bme18I	GGWCC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	1 cut(s)	758
BmsI	GCATC	4 cut(s)	97, 435, 527, 720
BpmI	CTGGAG	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	1 cut(s)	575
Bse8I	GATNNNNATC	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	3 cut(s)	232, 382, 591
BseJI	GATNNNNATC	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	345, 449, 484, 542
Bsh1285I	CGRYCG	2 cut(s)	101, 656
BshFI	GGCC	1 cut(s)	582
BsiEI	CGRYCG	2 cut(s)	101, 656
BsnI	GGCC	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	55, 66, 98, 369, 653
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	6 cut(s)	44, 47, 50, 64, 122, 558
BspANI	GGCC	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	758
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	5 cut(s)	55, 66, 98, 369, 653
Bst4CI	ACNGT	4 cut(s)	146, 471, 600, 610
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	232, 382, 591
BstKTI	GATC	5 cut(s)	58, 69, 101, 372, 656
BstMBI	GATC	5 cut(s)	55, 66, 98, 369, 653
BstMCI	CGRYCG	2 cut(s)	101, 656
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 103, 674, 722
BstV1I	GCAGC	4 cut(s)	345, 449, 484, 542
BsuRI	GGCC	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	232, 382, 591
BtsIMutI	CAGTG	2 cut(s)	151, 606
Cfr13I	GGNCC	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	467, 550
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	7 cut(s)	169, 246, 392, 464, 493, 502, 727
CviQI	GTAC	2 cut(s)	467, 550
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	5 cut(s)	57, 68, 100, 371, 655
DpnII	GATC	5 cut(s)	55, 66, 98, 369, 653
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco32I	GATATC	2 cut(s)	243, 640
Eco47I	GGWCC	1 cut(s)	757
EcoRV	GATATC	2 cut(s)	243, 640
FaeI	CATG	7 cut(s)	172, 249, 395, 467, 496, 505, 730
FatI	CATG	7 cut(s)	168, 245, 391, 463, 492, 501, 726
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	7 cut(s)	45, 48, 123, 334, 438, 498, 556
FokI	GGATG	3 cut(s)	239, 389, 578
Fsp4HI	GCNGC	7 cut(s)	45, 48, 123, 334, 438, 498, 556
FspBI	CTAG	2 cut(s)	117, 506
GluI	GCNGC	7 cut(s)	45, 48, 123, 334, 438, 498, 556
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	582
Hin1II	CATG	7 cut(s)	172, 249, 395, 467, 496, 505, 730
HincII	GTYRAC	2 cut(s)	111, 785
HindII	GTYRAC	2 cut(s)	111, 785
HindIII	AAGCTT	2 cut(s)	714, 744
HinfI	GANTC	5 cut(s)	179, 200, 383, 431, 460
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	4 cut(s)	111, 405, 550, 785
Hpy188I	TCNGA	7 cut(s)	60, 184, 205, 220, 459, 533, 589
Hpy188III	TCNNGA	2 cut(s)	92, 795
Hpy8I	GTNNAC	4 cut(s)	111, 405, 550, 785
Hpy99I	CGWCG	2 cut(s)	106, 112
HpyAV	CCTTC	2 cut(s)	581, 783
HpyCH4III	ACNGT	4 cut(s)	146, 471, 600, 610
HpyCH4V	TGCA	2 cut(s)	255, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 103, 674, 722
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	7 cut(s)	172, 249, 395, 467, 496, 505, 730
Kzo9I	GATC	5 cut(s)	55, 66, 98, 369, 653
LmnI	GCTCC	2 cut(s)	10, 94
LpnPI	CCDG	4 cut(s)	77, 580, 588, 738
Lsp1109I	GCAGC	4 cut(s)	345, 449, 484, 542
LweI	GCATC	4 cut(s)	97, 435, 527, 720
MaeI	CTAG	2 cut(s)	117, 506
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	5 cut(s)	57, 68, 100, 371, 655
MboI	GATC	5 cut(s)	55, 66, 98, 369, 653
MboII	GAAGA	5 cut(s)	43, 209, 422, 546, 647
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	4 cut(s)	256, 422, 426, 737
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	2 cut(s)	209, 392
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	8, 34, 67, 169, 171, 257, 660, 788
Mox20I	TGGCCA	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	94, 103, 674, 722
NdeII	GATC	5 cut(s)	55, 66, 98, 369, 653
NlaIII	CATG	7 cut(s)	172, 249, 395, 467, 496, 505, 730
NlaIV	GGNNCC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 107
PfeI	GAWTC	3 cut(s)	179, 431, 460
PkrI	GCNGC	7 cut(s)	46, 49, 124, 335, 439, 499, 557
Ple19I	CGATCG	2 cut(s)	101, 656
PleI	GAGTC	2 cut(s)	208, 391
PpsI	GAGTC	2 cut(s)	208, 391
PshBI	ATTAAT	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	758
PspPI	GGNCC	1 cut(s)	757
PvuI	CGATCG	2 cut(s)	101, 656
RsaI	GTAC	2 cut(s)	468, 551
RsaNI	GTAC	2 cut(s)	467, 550
SalI	GTCGAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	7 cut(s)	45, 48, 123, 334, 438, 498, 556
Sau3AI	GATC	5 cut(s)	55, 66, 98, 369, 653
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	209, 392
SetI	ASST	5 cut(s)	19, 321, 690, 718, 748
SfaNI	GCATC	4 cut(s)	97, 435, 527, 720
SinI	GGWCC	1 cut(s)	757
Sse9I	AATT	4 cut(s)	256, 422, 426, 737
SsiI	CCGC	6 cut(s)	44, 47, 50, 64, 122, 558
SspMI	CTAG	2 cut(s)	117, 506
TaaI	ACNGT	4 cut(s)	146, 471, 600, 610
TaqI	TCGA	4 cut(s)	29, 110, 652, 656
TasI	AATT	4 cut(s)	256, 422, 426, 737
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	3 cut(s)	47, 50, 125
TfiI	GAWTC	3 cut(s)	179, 431, 460
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	2 cut(s)	151, 613
TseI	GCWGC	4 cut(s)	333, 437, 497, 555
TspDTI	ATGAA	3 cut(s)	435, 452, 738
TspGWI	ACGGA	2 cut(s)	53, 422
TspRI	CASTG	2 cut(s)	151, 613
VpaK11BI	GGWCC	1 cut(s)	757
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	117, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.