Rh4DG119000

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001417
Physical Location & Seq
Reverse (-)
18827335 .. 18846195
18861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG119000.1

Sequence Viewer

Length: 594 bp
ATGTCAATTGTGCTTTGGGAGCCTGAACAAAGGAAAGATAATGTTTTAGCTATTGTGCCTGTTGAAGAACAGATGCCCAGCAAAAGAGAGGAATCTGAAACAGATAGTGAAGAGTCAGATGTTAGTGGTTCAGATGGGGATGACACATCTTGGATATCATGGTTTTGCAATTTGAGAGGAAATGAGTTTTTTTGTGAAGTTGATGATGATTATATACAAGATGATTTCAACCTTTGTGGGCTAAGCAGCCAAGTTCCGTATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCTTCACATGGTGATATGTTTACGGAAGAACAAAATGAATTAATTGAATCAGCAGCGGAGATGCTCTATGGTCTGATTCATGTACGATATATTTTGACCAGCAAGGGCATGGCTGCCATGCTAGACAAATACAAAAACTATGATTTCGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGATTTGAATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

197

Amino Acids

22.71

Weight (kDa)

4.25

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 50 - 193 1.5e-58 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 493
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 2 cut(s) 381, 464
AgsI TTSAA 4 cut(s) 65, 229, 344, 586
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 246, 350, 410
AseI ATTAAT 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 320
BalI TGGCCA 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 258, 362, 397
BccI CCATC 1 cut(s) 128
BfaI CTAG 1 cut(s) 419
BisI GCNGC 3 cut(s) 247, 351, 411
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 3 cut(s) 248, 352, 412
BmiI GGNNCC 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 63, 348
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 509
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bse1I ACTGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 3 cut(s) 145, 295, 504
BseNI ACTGG 1 cut(s) 488
BseXI GCAGC 3 cut(s) 258, 362, 397
BseYI CCCAGC 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 569
BsnI GGCC 1 cut(s) 495
Bsp143I GATC 2 cut(s) 282, 566
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 2 cut(s) 282, 566
Bst4CI ACNGT 2 cut(s) 513, 523
Bst6I CTCTTC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 3 cut(s) 145, 295, 504
BstKTI GATC 2 cut(s) 285, 569
BstMBI GATC 2 cut(s) 282, 566
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 258, 362, 397
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 3 cut(s) 145, 295, 504
BtsIMutI CAGTG 1 cut(s) 519
Csp6I GTAC 2 cut(s) 380, 463
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 5 cut(s) 159, 305, 377, 406, 415
CviJI RGCY 6 cut(s) 22, 50, 241, 249, 410, 495
CviKI_1 RGCY 6 cut(s) 22, 50, 241, 249, 410, 495
CviQI GTAC 2 cut(s) 380, 463
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 284, 568
DpnII GATC 2 cut(s) 282, 566
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco32I GATATC 2 cut(s) 156, 553
EcoRV GATATC 2 cut(s) 156, 553
FaeI CATG 5 cut(s) 162, 308, 380, 409, 418
FatI CATG 5 cut(s) 158, 304, 376, 405, 414
Fnu4HI GCNGC 3 cut(s) 247, 351, 411
FokI GGATG 3 cut(s) 152, 302, 491
Fsp4HI GCNGC 3 cut(s) 247, 351, 411
FspBI CTAG 1 cut(s) 419
GluI GCNGC 3 cut(s) 247, 351, 411
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 495
Hin1II CATG 5 cut(s) 162, 308, 380, 409, 418
HinfI GANTC 5 cut(s) 92, 113, 296, 344, 373
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 3 cut(s) 318, 463, 473
Hpy188I TCNGA 5 cut(s) 97, 118, 133, 372, 502
Hpy188III TCNNGA 2 cut(s) 445, 578
Hpy8I GTNNAC 3 cut(s) 318, 463, 473
HpyCH4III ACNGT 2 cut(s) 513, 523
HpyCH4V TGCA 2 cut(s) 168, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 5 cut(s) 162, 308, 380, 409, 418
Kzo9I GATC 2 cut(s) 282, 566
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 36, 72, 91, 409, 493, 501
Lsp1109I GCAGC 3 cut(s) 258, 362, 397
LweI GCATC 2 cut(s) 63, 348
MaeI CTAG 1 cut(s) 419
MalI GATC 2 cut(s) 284, 568
MboI GATC 2 cut(s) 282, 566
MboII GAAGA 5 cut(s) 77, 122, 291, 335, 560
MfeI CAATTG 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 4 cut(s) 6, 169, 335, 339
MluNI TGGCCA 1 cut(s) 495
MlyI GAGTC 2 cut(s) 122, 305
MnlI CCTC 4 cut(s) 82, 170, 494, 573
Mox20I TGGCCA 1 cut(s) 495
MscI TGGCCA 1 cut(s) 495
MseI TTAA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 353
MunI CAATTG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 2 cut(s) 282, 566
NlaIII CATG 5 cut(s) 162, 308, 380, 409, 418
NlaIV GGNNCC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 92, 344, 373
PkrI GCNGC 3 cut(s) 248, 352, 412
Ple19I CGATCG 1 cut(s) 569
PleI GAGTC 2 cut(s) 121, 304
PpsI GAGTC 2 cut(s) 121, 304
PshBI ATTAAT 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 21
PvuI CGATCG 1 cut(s) 569
RsaI GTAC 2 cut(s) 381, 464
RsaNI GTAC 2 cut(s) 380, 463
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 3 cut(s) 247, 351, 411
Sau3AI GATC 2 cut(s) 282, 566
SchI GAGTC 2 cut(s) 122, 305
SetI ASST 2 cut(s) 52, 234
SfaNI GCATC 2 cut(s) 63, 348
Sse9I AATT 4 cut(s) 6, 169, 335, 339
SsiI CCGC 1 cut(s) 353
SspMI CTAG 1 cut(s) 419
TaaI ACNGT 2 cut(s) 513, 523
TaqI TCGA 2 cut(s) 565, 569
TasI AATT 4 cut(s) 6, 169, 335, 339
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 3 cut(s) 92, 344, 373
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 526
TseI GCWGC 3 cut(s) 246, 350, 410
TspDTI ATGAA 2 cut(s) 348, 365
TspGWI ACGGA 2 cut(s) 246, 335
TspRI CASTG 1 cut(s) 526
VspI ATTAAT 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.