Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

8837547 .. 8841845

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTATAGAGAACGCGGAGGTGGGTCGTCGAAAACCGAGCTCGTCGGTGGGCCTCTGGACCGCAAGCGCATCAACGATGCCCTGGACAAGCACCTAGAGAAGTCCTCCCCTTCCACATCCCGAGCTAAGGACAAAGAGCGTCTCTCTCTCCCGTCCACATCCGCCGGAAAGTCTCAGCTCGATCACCGCGCCGCCGCCGCCGCTGCGGCCTCCCTCGCCAAGAACAAGTGCTCTGATGAGGAATCTGAGACAGACAGCGAAGAATCAGATGTCAGCGGTTCCGATGGAGATGACACATCTTGGATTTCATGGTTCTGTAATTTGCGAGGAAACGAATTTTTTTGTGAAGTCGATGATGAATACATTCAAGATGATTTTAATCTCTGTGGTTTGAGCAGTCAAGTTCCATATTATGACTATGCTCTTGATTTGATTCTAGATGTCGAATCTTCTCACGGTGATATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCAGCAGCGGAAATGCTATATGGTCTTATTCATGTTAGATACATATTGACAAGCAAAGGAATGTCTGCAATGTTGGAGAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCGGTTGGTCAATCTGACATTCCTCGTTCAAGCACTGTAAAAATATACTGCCCCAAATGCGAAGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGAGCTTATTTCGGCACCACATTTCCACACCTATTCTTGATGACGTATGGACACCTTAAACCACAGAAGGCCTCACAGAGTTATGTTCCAAGAGTTTTTGGCTTCAAGCTCCACAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

288

Amino Acids

32.18

Weight (kDa)

5.25

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	100 - 283	2.1e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AccII	CGCG	2 cut(s)	15, 189
AclWI	GGATC	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	368, 494, 666, 847
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	5 cut(s)	40, 125, 178, 746, 850
AluI	AGCT	5 cut(s)	40, 125, 178, 746, 850
Alw21I	GWGCWC	2 cut(s)	42, 233
Alw26I	GTCTC	3 cut(s)	146, 177, 242
AlwI	GGATC	1 cut(s)	711
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	3 cut(s)	50, 207, 810
ApeKI	GCWGC	2 cut(s)	203, 500
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	2 cut(s)	69, 191
AspS9I	GGNCC	2 cut(s)	50, 58
AsuHPI	GGTGA	2 cut(s)	176, 470
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	42, 233
BbvI	GCAGC	2 cut(s)	190, 512
BccI	CCATC	2 cut(s)	278, 734
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	146, 177, 242
BfaI	CTAG	2 cut(s)	95, 437
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	7 cut(s)	192, 195, 198, 201, 204, 207, 501
BlsI	GCNGC	7 cut(s)	193, 196, 199, 202, 205, 208, 502
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	50, 58
BmiI	GGNNCC	2 cut(s)	280, 757
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	67, 78
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 128, 160
Bpu10I	CCTNAGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	81, 727
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	81, 727
BseGI	GGATG	2 cut(s)	116, 158
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	188, 237
BseXI	GCAGC	2 cut(s)	190, 512
Bsh1236I	CGCG	2 cut(s)	15, 189
BshFI	GGCC	3 cut(s)	52, 209, 812
BshNI	GGYRCC	1 cut(s)	755
BsiHKAI	GWGCWC	2 cut(s)	42, 233
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	165, 638
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	146, 177, 242
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	52, 209, 812
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	42, 233
Bsp143I	GATC	2 cut(s)	181, 716
BspANI	GGCC	3 cut(s)	52, 209, 812
BspCNI	CTCAG	2 cut(s)	187, 238
BspFNI	CGCG	2 cut(s)	15, 189
BspLI	GGNNCC	2 cut(s)	280, 757
BspPI	GGATC	1 cut(s)	711
BspQI	GCTCTTC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	81, 727
BssMI	GATC	2 cut(s)	181, 716
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	458, 673
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	126, 174, 246
BstF5I	GGATG	2 cut(s)	116, 158
BstFNI	CGCG	2 cut(s)	15, 189
BstHHI	GCGC	2 cut(s)	69, 191
BstKTI	GATC	2 cut(s)	184, 719
BstMAI	GTCTC	3 cut(s)	146, 177, 242
BstMBI	GATC	2 cut(s)	181, 716
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 200, 203, 206, 215, 693
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	15, 189
BstV1I	GCAGC	2 cut(s)	190, 512
BsuRI	GGCC	3 cut(s)	52, 209, 812
BtsCI	GGATG	2 cut(s)	116, 158
BtsIMutI	CAGTG	2 cut(s)	468, 669
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	2 cut(s)	69, 191
Cfr13I	GGNCC	2 cut(s)	50, 58
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	2 cut(s)	309, 527
CviJI	RGCY	9 cut(s)	40, 52, 125, 178, 209, 746, 812, 843, 850
CviKI_1	RGCY	9 cut(s)	40, 52, 125, 178, 209, 746, 812, 843, 850
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	3 cut(s)	126, 174, 246
DpnI	GATC	2 cut(s)	183, 718
DpnII	GATC	2 cut(s)	181, 716
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	727
Eco147I	AGGCCT	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	727
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	312, 530
FatI	CATG	2 cut(s)	308, 526
Fnu4HI	GCNGC	7 cut(s)	192, 195, 198, 201, 204, 207, 501
FokI	GGATG	2 cut(s)	103, 145
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	7 cut(s)	192, 195, 198, 201, 204, 207, 501
FspBI	CTAG	2 cut(s)	95, 437
GlaI	GCGC	2 cut(s)	68, 190
GluI	GCNGC	7 cut(s)	192, 195, 198, 201, 204, 207, 501
HaeIII	GGCC	3 cut(s)	52, 209, 812
HapII	CCGG	2 cut(s)	165, 638
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	69, 191
Hin1II	CATG	2 cut(s)	312, 530
Hin6I	GCGC	2 cut(s)	67, 189
HinP1I	GCGC	2 cut(s)	67, 189
HinfI	GANTC	5 cut(s)	242, 263, 433, 446, 494
HpaII	CCGG	2 cut(s)	165, 638
HphI	GGTGA	2 cut(s)	176, 470
Hpy166II	GTNNAC	4 cut(s)	156, 468, 613, 623
Hpy188I	TCNGA	5 cut(s)	235, 247, 268, 283, 652
Hpy188III	TCNNGA	6 cut(s)	56, 120, 368, 425, 437, 778
Hpy8I	GTNNAC	4 cut(s)	156, 468, 613, 623
Hpy99I	CGWCG	2 cut(s)	31, 47
HpyAV	CCTTC	3 cut(s)	120, 644, 802
HpyCH4III	ACNGT	2 cut(s)	458, 673
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 200, 203, 206, 215, 693
HpyF3I	CTNAG	3 cut(s)	126, 174, 246
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	2 cut(s)	312, 530
HspAI	GCGC	2 cut(s)	67, 189
Kzo9I	GATC	2 cut(s)	181, 716
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	743, 855
LpnPI	CCDG	6 cut(s)	41, 68, 95, 178, 643, 651
Lsp1109I	GCAGC	2 cut(s)	190, 512
LweI	GCATC	2 cut(s)	67, 78
MaeI	CTAG	2 cut(s)	95, 437
MaeII	ACGT	1 cut(s)	785
MalI	GATC	2 cut(s)	183, 718
MboI	GATC	2 cut(s)	181, 716
MboII	GAAGA	5 cut(s)	272, 441, 485, 609, 710
MhlI	GDGCHC	2 cut(s)	42, 233
MluCI	AATT	2 cut(s)	319, 335
MmeI	TCCRAC	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	378, 798
MspA1I	CMGCKG	3 cut(s)	203, 276, 503
MspI	CCGG	2 cut(s)	165, 638
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	15, 189
MwoI	GCNNNNNNNGC	6 cut(s)	197, 200, 203, 206, 215, 693
NdeII	GATC	2 cut(s)	181, 716
NlaIII	CATG	2 cut(s)	312, 530
NlaIV	GGNNCC	2 cut(s)	280, 757
PceI	AGGCCT	1 cut(s)	812
PciSI	GCTCTTC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	5 cut(s)	242, 263, 433, 446, 494
PkrI	GCNGC	7 cut(s)	193, 196, 199, 202, 205, 208, 502
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	280, 757
PspPI	GGNCC	2 cut(s)	50, 58
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	378, 798
SatI	GCNGC	7 cut(s)	192, 195, 198, 201, 204, 207, 501
Sau3AI	GATC	2 cut(s)	181, 716
Sau96I	GGNCC	2 cut(s)	50, 58
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	42, 233
SfaNI	GCATC	2 cut(s)	67, 78
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	319, 335
SseBI	AGGCCT	1 cut(s)	812
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	2 cut(s)	95, 437
SstI	GAGCTC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	458, 673
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	5 cut(s)	29, 180, 351, 444, 715
TasI	AATT	2 cut(s)	319, 335
TauI	GCSGC	5 cut(s)	194, 197, 200, 203, 209
TfiI	GAWTC	5 cut(s)	242, 263, 433, 446, 494
Tru1I	TTAA	2 cut(s)	378, 798
Tru9I	TTAA	2 cut(s)	378, 798
TscAI	CASTG	2 cut(s)	475, 676
TseI	GCWGC	2 cut(s)	203, 500
TspDTI	ATGAA	3 cut(s)	297, 372, 515
TspRI	CASTG	2 cut(s)	475, 676
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	335
XbaI	TCTAGA	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	95, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.