pycom06g03810

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001417
Physical Location & Seq
Reverse (-)
4746394 .. 4749840
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03810.5

Sequence Viewer

Length: 864 bp
ATGTACAGAGAGCGAGGGTTGGGTGGGTCTAAGGCGACGGAGGTGGTGGGGCCCGCCGCTGATCGGAAGCAGCGGATCAACGACGCCTTGGACAAGCAGCTCGAGCGATCCTCGCCCTCCACTTCTAGGGCAATCAACGGCAAGGATAAGCCGCTTATTATGGGTGGTAAGCAGCCTCCCTCCGATCACAGAGACTCTCGCTCTGCCTCTGCGTCTCTCACCAAAAACAATTGCTCCGATGAAGAATCTGAGACAGACAGTGAAGAGTCAGATGTTAGTGGTTCCGATGGGGATGACACATCTTGGATTTCATGGTTTTGCAATTTGCGAGGAAATGAATTTTTCTGTGAAGTGGATGATGATTACATACAAGATGATTTTAACCTCTGCGGGCTAAGCAGCCAAGTGCCATACTATGATTATGCACTTGATTTAATTTTGGATGTTGAATCTTCTCATGGTGATATGTTTACAGAAGAACAAAATGAATTGATTGAATCAGCAGCAGAGATGCTTTACGGTCTTATTCATGTTCGATATATATTGACAAGCAAAGGCTTGGCTGCCATGCTAGACAAGTACAAGAACTATGATTTTGGGAGATGCCCAAGAGTTTTCTGCTGCGGACAACCCTGCCTCCCAGTTGGCCAGTCAGATATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATTTACTACCCTCGATCGAAGTATCAAGACATTGATGGAGCCTATTTCGGAAGTACATTCCCTCACCTGTTCTTGATGACATACGGGCACCTGAAGCCACAGAAAGCATCACAGAGTTATGTTCCTAGAGTGTTCGGATTCAAGCTTCACAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

288

Amino Acids

32.28

Weight (kDa)

4.99

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 792
AciI CCGC 6 cut(s) 54, 57, 73, 152, 390, 624
AclWI GGATC 2 cut(s) 83, 102
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 5, 581, 760
AfiI CCNNNNNNNGG 2 cut(s) 63, 126
AgsI TTSAA 3 cut(s) 449, 497, 847
AluBI AGCT 2 cut(s) 100, 850
AluI AGCT 2 cut(s) 100, 850
Alw26I GTCTC 3 cut(s) 186, 219, 245
AlwI GGATC 2 cut(s) 83, 102
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 50, 646
ApaI GGGCCC 1 cut(s) 54
ApeKI GCWGC 7 cut(s) 70, 97, 172, 399, 503, 563, 621
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 50, 51
AsuHPI GGTGA 3 cut(s) 211, 473, 761
AvaI CYCGRG 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 54, 795
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 1 cut(s) 54
BbvI GCAGC 7 cut(s) 82, 109, 184, 411, 515, 550, 608
BccI CCATC 2 cut(s) 281, 734
BceAI ACGGC 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 186, 219, 245
BfaI CTAG 3 cut(s) 126, 572, 831
BisI GCNGC 9 cut(s) 57, 71, 98, 152, 173, 400, 504, 564, 622
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 9 cut(s) 58, 72, 99, 153, 174, 401, 505, 565, 623
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 50, 51
BmiI GGNNCC 5 cut(s) 51, 52, 283, 745, 794
BmrI ACTGGG 1 cut(s) 635
BmsI GCATC 3 cut(s) 501, 593, 821
BmuI ACTGGG 1 cut(s) 635
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu1102I GCTNAGC 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 87, 662
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 621, 651
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 126
Bse1I ACTGG 2 cut(s) 641, 649
BseDI CCNNGG 2 cut(s) 87, 662
BseGI GGATG 3 cut(s) 298, 361, 448
BseLI CCNNNNNNNGG 2 cut(s) 63, 126
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 641, 649
BseSI GKGCMC 2 cut(s) 54, 795
BseXI GCAGC 7 cut(s) 82, 109, 184, 411, 515, 550, 608
Bsh1285I CGRYCG 1 cut(s) 722
BshFI GGCC 2 cut(s) 52, 648
BshNI GGYRCC 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 722
BsiHKCI CYCGRG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 63, 126
BsmAI GTCTC 3 cut(s) 186, 219, 245
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 52, 648
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 54, 795
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 61, 75, 107, 184, 719
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 6 cut(s) 54, 57, 73, 152, 390, 624
BspANI GGCC 2 cut(s) 52, 648
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 5 cut(s) 51, 52, 283, 745, 794
BspPI GGATC 2 cut(s) 83, 102
BspT107I GGYRCC 1 cut(s) 792
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 641, 649
BssECI CCNNGG 2 cut(s) 87, 662
BssMI GATC 5 cut(s) 61, 75, 107, 184, 719
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 4 cut(s) 260, 521, 666, 676
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 54, 392
BstDEI CTNAG 3 cut(s) 30, 249, 395
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 3 cut(s) 298, 361, 448
BstKTI GATC 5 cut(s) 64, 78, 110, 187, 722
BstMAI GTCTC 3 cut(s) 186, 219, 245
BstMBI GATC 5 cut(s) 61, 75, 107, 184, 719
BstMCI CGRYCG 1 cut(s) 722
BstMWI GCNNNNNNNGC 5 cut(s) 103, 112, 396, 799, 856
BstSLI GKGCMC 2 cut(s) 54, 795
BstV1I GCAGC 7 cut(s) 82, 109, 184, 411, 515, 550, 608
BsuRI GGCC 2 cut(s) 52, 648
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 3 cut(s) 298, 361, 448
BtsIMutI CAGTG 2 cut(s) 265, 672
Cac8I GCNNGC 2 cut(s) 54, 392
Cfr13I GGNCC 2 cut(s) 50, 51
CseI GACGC 2 cut(s) 92, 201
Csp6I GTAC 3 cut(s) 4, 580, 759
CviAII CATG 5 cut(s) 312, 458, 530, 568, 861
CviQI GTAC 3 cut(s) 4, 580, 759
DdeI CTNAG 3 cut(s) 30, 249, 395
DpnI GATC 5 cut(s) 63, 77, 109, 186, 721
DpnII GATC 5 cut(s) 61, 75, 107, 184, 719
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 50
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 5 cut(s) 315, 461, 533, 571, 864
FatI CATG 5 cut(s) 311, 457, 529, 567, 860
FauI CCCGC 2 cut(s) 61, 383
Fnu4HI GCNGC 9 cut(s) 57, 71, 98, 152, 173, 400, 504, 564, 622
FokI GGATG 3 cut(s) 305, 368, 455
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 9 cut(s) 57, 71, 98, 152, 173, 400, 504, 564, 622
FspBI CTAG 3 cut(s) 126, 572, 831
GluI GCNGC 9 cut(s) 57, 71, 98, 152, 173, 400, 504, 564, 622
HaeIII GGCC 2 cut(s) 52, 648
HgaI GACGC 2 cut(s) 92, 201
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 5 cut(s) 315, 461, 533, 571, 864
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 6 cut(s) 194, 245, 266, 449, 497, 843
HphI GGTGA 3 cut(s) 211, 473, 761
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 9 cut(s) 66, 184, 238, 250, 271, 286, 655, 755, 842
Hpy188III TCNNGA 2 cut(s) 731, 778
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 2 cut(s) 40, 86
HpyCH4III ACNGT 4 cut(s) 260, 521, 666, 676
HpyCH4V TGCA 2 cut(s) 321, 425
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 112, 396, 799, 856
HpyF3I CTNAG 3 cut(s) 30, 249, 395
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 5 cut(s) 315, 461, 533, 571, 864
Kzo9I GATC 5 cut(s) 61, 75, 107, 184, 719
LmnI GCTCC 2 cut(s) 239, 743
LpnPI CCDG 5 cut(s) 646, 654, 662, 785, 809
Lsp1109I GCAGC 7 cut(s) 82, 109, 184, 411, 515, 550, 608
LweI GCATC 3 cut(s) 501, 593, 821
MaeI CTAG 3 cut(s) 126, 572, 831
MalI GATC 5 cut(s) 63, 77, 109, 186, 721
MboI GATC 5 cut(s) 61, 75, 107, 184, 719
MboII GAAGA 5 cut(s) 254, 275, 444, 488, 713
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 54, 795
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 5 cut(s) 229, 322, 338, 435, 488
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 188, 275
Mox20I TGGCCA 1 cut(s) 648
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 381, 434
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 59, 73
MunI CAATTG 1 cut(s) 229
MwoI GCNNNNNNNGC 5 cut(s) 103, 112, 396, 799, 856
NdeII GATC 5 cut(s) 61, 75, 107, 184, 719
NlaIII CATG 5 cut(s) 315, 461, 533, 571, 864
NlaIV GGNNCC 5 cut(s) 51, 52, 283, 745, 794
PaeR7I CTCGAG 1 cut(s) 101
PfeI GAWTC 4 cut(s) 245, 449, 497, 843
PkrI GCNGC 9 cut(s) 58, 72, 99, 153, 174, 401, 505, 565, 623
Ple19I CGATCG 1 cut(s) 722
PleI GAGTC 2 cut(s) 188, 274
PpsI GAGTC 2 cut(s) 188, 274
PspN4I GGNNCC 5 cut(s) 51, 52, 283, 745, 794
PspOMI GGGCCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 50, 51
PspXI VCTCGAGB 1 cut(s) 101
PvuI CGATCG 1 cut(s) 722
RsaI GTAC 3 cut(s) 5, 581, 760
RsaNI GTAC 3 cut(s) 4, 580, 759
SaqAI TTAA 2 cut(s) 381, 434
SatI GCNGC 9 cut(s) 57, 71, 98, 152, 173, 400, 504, 564, 622
Sau3AI GATC 5 cut(s) 61, 75, 107, 184, 719
Sau96I GGNCC 2 cut(s) 50, 51
SchI GAGTC 2 cut(s) 188, 275
SduI GDGCHC 2 cut(s) 54, 795
SetI ASST 6 cut(s) 45, 102, 387, 774, 798, 852
SfaNI GCATC 3 cut(s) 501, 593, 821
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 229, 322, 338, 435, 488
SsiI CCGC 6 cut(s) 54, 57, 73, 152, 390, 624
SspMI CTAG 3 cut(s) 126, 572, 831
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 4 cut(s) 260, 521, 666, 676
TaqI TCGA 4 cut(s) 102, 535, 718, 722
TasI AATT 5 cut(s) 229, 322, 338, 435, 488
TatI WGTACW 3 cut(s) 3, 579, 758
TauI GCSGC 2 cut(s) 59, 154
TfiI GAWTC 4 cut(s) 245, 449, 497, 843
Tru1I TTAA 2 cut(s) 381, 434
Tru9I TTAA 2 cut(s) 381, 434
TscAI CASTG 2 cut(s) 265, 679
TseI GCWGC 7 cut(s) 70, 97, 172, 399, 503, 563, 621
TspDTI ATGAA 5 cut(s) 255, 300, 351, 501, 518
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 265, 679
XapI RAATTY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 3 cut(s) 126, 572, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.