Rh7BG225600

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001417
Physical Location & Seq
Forward (+)
19437633 .. 19441261
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG225600.1

Sequence Viewer

Length: 795 bp
ATGTATAGAGAGCGAGGGTCGGGTGGGTCGAAGATGACGGAGGTGGGGGCGGTTGATCGGAAGCGGATCAACGACGCCTTGGACAAGCAGCTGGAGCGATCGTCGCCGTCGACTTCTAGGGCGGCAATCAACGGCAAGGATGGCAGCAGTAATAAGCCTCTTATCATGGGGGAGGAATCTGAAACAGATAGTGAAGAGTCAGATGTTAGTGGATCAGATGGGGATGACACATCTTGGATATCTTGGTTTTGCAATTTGAGAGGAAATGAGTTTTTTTGTGAAGTTGATGATGATTATATACAAGATGATTTCAACCTTTGTGGGCTAAGCAGCCAAGTTCCATATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCTTCACATGGTGATATGTTTACTGAAGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTCTATGGTCTGATTCATGTACGATATATTTTGACCAGCAAAGGCATGGCTGCCATGCTAGACAAATACAAGAACTATGATTTCGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATTCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGACATTGACGGAGCCTATTTCGGAAGTACATTTCCTCACCTGTTCTTGATGACATACGGGCACCTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTGTTTGGCTTCAAGCTTCACAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

264

Amino Acids

29.85

Weight (kDa)

4.84

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 78 - 260 1.2e-76 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 723
AccI GTMKAC 1 cut(s) 110
AciI CCGC 3 cut(s) 50, 64, 122
AclWI GGATC 2 cut(s) 74, 220
AcoI YGGCCR 1 cut(s) 577
AcuI CTGAAG 2 cut(s) 426, 749
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 465, 548, 691
AgsI TTSAA 3 cut(s) 313, 428, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 3 cut(s) 91, 753, 781
AluI AGCT 3 cut(s) 91, 753, 781
AlwI GGATC 2 cut(s) 74, 220
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 5 cut(s) 88, 144, 330, 434, 494
AseI ATTAAT 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 404, 692
BaeGI GKGCMC 1 cut(s) 726
BalI TGGCCA 1 cut(s) 579
BanI GGYRCC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 5 cut(s) 100, 156, 342, 446, 481
BccI CCATC 3 cut(s) 134, 212, 751
BceAI ACGGC 2 cut(s) 91, 148
BfaI CTAG 2 cut(s) 117, 503
BisI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 6 cut(s) 90, 124, 146, 332, 436, 496
BmiI GGNNCC 2 cut(s) 676, 725
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 566
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 78, 593
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 552, 582
Bse1I ACTGG 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 78, 593
BseGI GGATG 3 cut(s) 145, 229, 379
BseNI ACTGG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 5 cut(s) 100, 156, 342, 446, 481
Bsh1285I CGRYCG 2 cut(s) 101, 653
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 723
BsiEI CGRYCG 2 cut(s) 101, 653
BsnI GGCC 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 6 cut(s) 55, 66, 98, 212, 366, 650
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 3 cut(s) 50, 64, 122
BspANI GGCC 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 676, 725
BspPI GGATC 2 cut(s) 74, 220
BspT107I GGYRCC 1 cut(s) 723
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 78, 593
BssMI GATC 6 cut(s) 55, 66, 98, 212, 366, 650
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 597, 607
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 593
BstF5I GGATG 3 cut(s) 145, 229, 379
BstKTI GATC 6 cut(s) 58, 69, 101, 215, 369, 653
BstMBI GATC 6 cut(s) 55, 66, 98, 212, 366, 650
BstMCI CGRYCG 2 cut(s) 101, 653
BstMWI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 730, 739, 787
BstSLI GKGCMC 1 cut(s) 726
BstV1I GCAGC 5 cut(s) 100, 156, 342, 446, 481
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 593
BtsCI GGATG 3 cut(s) 145, 229, 379
BtsIMutI CAGTG 1 cut(s) 603
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 464, 547, 690
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 6 cut(s) 166, 389, 461, 490, 499, 792
CviQI GTAC 3 cut(s) 464, 547, 690
DdeI CTNAG 1 cut(s) 326
DpnI GATC 6 cut(s) 57, 68, 100, 214, 368, 652
DpnII GATC 6 cut(s) 55, 66, 98, 212, 366, 650
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 2 cut(s) 240, 637
Eco57I CTGAAG 2 cut(s) 426, 749
EcoRV GATATC 2 cut(s) 240, 637
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 6 cut(s) 169, 392, 464, 493, 502, 795
FatI CATG 6 cut(s) 165, 388, 460, 489, 498, 791
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
FokI GGATG 3 cut(s) 152, 236, 386
Fsp4HI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
FspBI CTAG 2 cut(s) 117, 503
GluI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 579
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 6 cut(s) 169, 392, 464, 493, 502, 795
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 5 cut(s) 176, 197, 380, 428, 457
HphI GGTGA 2 cut(s) 404, 692
Hpy166II GTNNAC 4 cut(s) 111, 402, 547, 557
Hpy188I TCNGA 7 cut(s) 60, 181, 202, 217, 456, 586, 686
Hpy188III TCNNGA 3 cut(s) 529, 662, 709
Hpy8I GTNNAC 4 cut(s) 111, 402, 547, 557
Hpy99I CGWCG 3 cut(s) 77, 106, 112
HpyCH4III ACNGT 2 cut(s) 597, 607
HpyCH4V TGCA 2 cut(s) 252, 356
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 730, 739, 787
HpyF3I CTNAG 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 6 cut(s) 169, 392, 464, 493, 502, 795
Kzo9I GATC 6 cut(s) 55, 66, 98, 212, 366, 650
LmnI GCTCC 2 cut(s) 94, 674
LpnPI CCDG 6 cut(s) 77, 493, 577, 585, 716, 740
Lsp1109I GCAGC 5 cut(s) 100, 156, 342, 446, 481
LweI GCATC 1 cut(s) 432
MaeI CTAG 2 cut(s) 117, 503
MalI GATC 6 cut(s) 57, 68, 100, 214, 368, 652
MboI GATC 6 cut(s) 55, 66, 98, 212, 366, 650
MboII GAAGA 5 cut(s) 43, 206, 375, 419, 644
MhlI GDGCHC 1 cut(s) 726
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 3 cut(s) 253, 419, 423
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 2 cut(s) 206, 389
MnlI CCTC 8 cut(s) 8, 34, 166, 168, 254, 578, 657, 708
Mox20I TGGCCA 1 cut(s) 579
MscI TGGCCA 1 cut(s) 579
MseI TTAA 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 91
MwoI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 730, 739, 787
NdeII GATC 6 cut(s) 55, 66, 98, 212, 366, 650
NlaIII CATG 6 cut(s) 169, 392, 464, 493, 502, 795
NlaIV GGNNCC 2 cut(s) 676, 725
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 107
PfeI GAWTC 3 cut(s) 176, 428, 457
PkrI GCNGC 6 cut(s) 90, 124, 146, 332, 436, 496
Ple19I CGATCG 2 cut(s) 101, 653
PleI GAGTC 2 cut(s) 205, 388
PpsI GAGTC 2 cut(s) 205, 388
PshBI ATTAAT 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 676, 725
PvuI CGATCG 2 cut(s) 101, 653
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 3 cut(s) 465, 548, 691
RsaNI GTAC 3 cut(s) 464, 547, 690
SalI GTCGAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
Sau3AI GATC 6 cut(s) 55, 66, 98, 212, 366, 650
SchI GAGTC 2 cut(s) 206, 389
SduI GDGCHC 1 cut(s) 726
SetI ASST 7 cut(s) 45, 93, 318, 705, 729, 755, 783
SfaNI GCATC 1 cut(s) 432
Sse9I AATT 3 cut(s) 253, 419, 423
SsiI CCGC 3 cut(s) 50, 64, 122
SspMI CTAG 2 cut(s) 117, 503
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 597, 607
TaqI TCGA 4 cut(s) 29, 110, 649, 653
TasI AATT 3 cut(s) 253, 419, 423
TatI WGTACW 2 cut(s) 546, 689
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 176, 428, 457
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 610
TseI GCWGC 5 cut(s) 88, 144, 330, 434, 494
TspDTI ATGAA 2 cut(s) 432, 449
TspGWI ACGGA 2 cut(s) 53, 687
TspRI CASTG 1 cut(s) 610
VspI ATTAAT 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 2 cut(s) 117, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.