Rw2G005570

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001417
Physical Location & Seq
Reverse (-)
5242004 .. 5242876
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005570.1

Sequence Viewer

Length: 873 bp
ATGTATAGAGAGCGAGGGTCGGGTGGGTCGAAGATGTCGGAGGTGGGGGCGGTTGATCGGAAGCGGATCAACGACGCCTTGGACAAGCAGCTGGAGCGATCGTCGCCGTCGACTTCTAGGGCTGCAATCAACGGCAAGGATGGCAGCAGTAATAAGCCTCTTATCATGGGGGGTAAGGGTTTGATATCTGATCATCGTAGAGACTCTCGCTCTGCCTCTGCTTCTCTATCCAAAACCAATTGCTCTGATGAGGAATCTGAAACAGATAGTGAAGAGTCAGATGTTAGTGGTTCAGATGGGGATGACACATCTTGGATATCATGGTTTTGCAATTTGAGAGGAAATGAGTTTTTTTGTGAAGTTGATGATGATTATATACAAGATGATTTCAACCTTTGTGGGCTAAGCAGCCAAGTTCCGTATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCTTCACATGGTGATATGTTTACGGAAGAACAAAATGAATTGATTGAATCAGCAGCGGAGATGCTCTATGGTCTGATTCATGTACGATATATTTTGACCAGCAAGGGCATGGCTGCCATGCTAGACAAATACAAAAACTATGATTTCGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGACATTGACGGAGCCTATTTCGGAAGTACATTTCCTCACCTGTTCTTGATGACGTACGGGCACCTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTGTTTGGCTTCAAGCTTCACAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

290

Amino Acids

32.57

Weight (kDa)

5.07

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 104 - 286 1.6e-76 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 801
AccI GTMKAC 1 cut(s) 110
AciI CCGC 3 cut(s) 50, 64, 515
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 827
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 4 cut(s) 543, 626, 769, 797
AgsI TTSAA 3 cut(s) 391, 506, 856
AluBI AGCT 3 cut(s) 91, 831, 859
AluI AGCT 3 cut(s) 91, 831, 859
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 655
ApeKI GCWGC 6 cut(s) 88, 122, 144, 408, 512, 572
AsuHPI GGTGA 2 cut(s) 482, 770
BaeGI GKGCMC 1 cut(s) 804
BalI TGGCCA 1 cut(s) 657
BanI GGYRCC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 6 cut(s) 100, 109, 156, 420, 524, 559
BccI CCATC 3 cut(s) 134, 290, 829
BceAI ACGGC 2 cut(s) 91, 148
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 2 cut(s) 117, 581
BisI GCNGC 6 cut(s) 89, 123, 145, 409, 513, 573
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 6 cut(s) 90, 124, 146, 410, 514, 574
BmiI GGNNCC 2 cut(s) 754, 803
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 1 cut(s) 510
BmuI ACTGGG 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 78, 671
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 630, 660
Bse1I ACTGG 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 78, 671
BseGI GGATG 4 cut(s) 145, 307, 457, 666
BseNI ACTGG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 804
BseXI GCAGC 6 cut(s) 100, 109, 156, 420, 524, 559
Bsh1285I CGRYCG 2 cut(s) 101, 731
BshFI GGCC 1 cut(s) 657
BshNI GGYRCC 1 cut(s) 801
BsiEI CGRYCG 2 cut(s) 101, 731
BsiWI CGTACG 1 cut(s) 795
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 804
Bsp143I GATC 6 cut(s) 55, 66, 98, 190, 444, 728
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 3 cut(s) 50, 64, 515
BspANI GGCC 1 cut(s) 657
BspLI GGNNCC 2 cut(s) 754, 803
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 801
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 2 cut(s) 78, 671
BssMI GATC 6 cut(s) 55, 66, 98, 190, 444, 728
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 675, 685
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 671
BstF5I GGATG 4 cut(s) 145, 307, 457, 666
BstKTI GATC 6 cut(s) 58, 69, 101, 193, 447, 731
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 6 cut(s) 55, 66, 98, 190, 444, 728
BstMCI CGRYCG 2 cut(s) 101, 731
BstMWI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 808, 817, 865
BstSLI GKGCMC 1 cut(s) 804
BstV1I GCAGC 6 cut(s) 100, 109, 156, 420, 524, 559
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 657
BtgI CCRYGG 1 cut(s) 671
BtsCI GGATG 4 cut(s) 145, 307, 457, 666
BtsIMutI CAGTG 1 cut(s) 681
CseI GACGC 1 cut(s) 83
Csp6I GTAC 4 cut(s) 542, 625, 768, 796
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 7 cut(s) 166, 321, 467, 539, 568, 577, 870
CviQI GTAC 4 cut(s) 542, 625, 768, 796
DdeI CTNAG 1 cut(s) 404
DpnI GATC 6 cut(s) 57, 68, 100, 192, 446, 730
DpnII GATC 6 cut(s) 55, 66, 98, 190, 444, 728
DraIII CACNNNGTG 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 3 cut(s) 186, 318, 715
Eco57I CTGAAG 1 cut(s) 827
EcoRV GATATC 3 cut(s) 186, 318, 715
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 7 cut(s) 169, 324, 470, 542, 571, 580, 873
FatI CATG 7 cut(s) 165, 320, 466, 538, 567, 576, 869
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 6 cut(s) 89, 123, 145, 409, 513, 573
FokI GGATG 4 cut(s) 152, 314, 464, 653
Fsp4HI GCNGC 6 cut(s) 89, 123, 145, 409, 513, 573
FspBI CTAG 2 cut(s) 117, 581
GluI GCNGC 6 cut(s) 89, 123, 145, 409, 513, 573
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 657
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 7 cut(s) 169, 324, 470, 542, 571, 580, 873
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 6 cut(s) 203, 254, 275, 458, 506, 535
HphI GGTGA 2 cut(s) 482, 770
Hpy166II GTNNAC 4 cut(s) 111, 480, 625, 635
Hpy188III TCNNGA 3 cut(s) 607, 740, 787
Hpy8I GTNNAC 4 cut(s) 111, 480, 625, 635
Hpy99I CGWCG 3 cut(s) 77, 106, 112
HpyCH4III ACNGT 2 cut(s) 675, 685
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 3 cut(s) 125, 330, 434
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 808, 817, 865
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 794
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 7 cut(s) 169, 324, 470, 542, 571, 580, 873
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 55, 66, 98, 190, 444, 728
LmnI GCTCC 2 cut(s) 94, 752
LpnPI CCDG 6 cut(s) 77, 571, 655, 663, 794, 818
Lsp1109I GCAGC 6 cut(s) 100, 109, 156, 420, 524, 559
LweI GCATC 1 cut(s) 510
MaeI CTAG 2 cut(s) 117, 581
MaeII ACGT 1 cut(s) 794
MalI GATC 6 cut(s) 57, 68, 100, 192, 446, 730
MboI GATC 6 cut(s) 55, 66, 98, 190, 444, 728
MboII GAAGA 5 cut(s) 43, 284, 453, 497, 722
MfeI CAATTG 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 804
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 3 cut(s) 238, 331, 497
MluNI TGGCCA 1 cut(s) 657
MlyI GAGTC 3 cut(s) 197, 284, 467
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 9 cut(s) 8, 34, 168, 226, 244, 332, 656, 735, 786
Mox20I TGGCCA 1 cut(s) 657
MscI TGGCCA 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 657
MspA1I CMGCKG 2 cut(s) 91, 515
MunI CAATTG 1 cut(s) 238
MwoI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 808, 817, 865
NdeII GATC 6 cut(s) 55, 66, 98, 190, 444, 728
NlaIII CATG 7 cut(s) 169, 324, 470, 542, 571, 580, 873
NlaIV GGNNCC 2 cut(s) 754, 803
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 107
PfeI GAWTC 3 cut(s) 254, 506, 535
Pfl23II CGTACG 1 cut(s) 795
PkrI GCNGC 6 cut(s) 90, 124, 146, 410, 514, 574
Ple19I CGATCG 2 cut(s) 101, 731
PleI GAGTC 3 cut(s) 197, 283, 466
PpsI GAGTC 3 cut(s) 197, 283, 466
PspLI CGTACG 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 754, 803
PvuI CGATCG 2 cut(s) 101, 731
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 4 cut(s) 543, 626, 769, 797
RsaNI GTAC 4 cut(s) 542, 625, 768, 796
SalI GTCGAC 1 cut(s) 109
SatI GCNGC 6 cut(s) 89, 123, 145, 409, 513, 573
Sau3AI GATC 6 cut(s) 55, 66, 98, 190, 444, 728
SchI GAGTC 3 cut(s) 197, 284, 467
SduI GDGCHC 1 cut(s) 804
SetI ASST 8 cut(s) 45, 93, 396, 783, 797, 807, 833, 861
SfaNI GCATC 1 cut(s) 510
Sse9I AATT 3 cut(s) 238, 331, 497
SsiI CCGC 3 cut(s) 50, 64, 515
SspMI CTAG 2 cut(s) 117, 581
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 675, 685
TaiI ACGT 1 cut(s) 797
TaqI TCGA 4 cut(s) 29, 110, 727, 731
TasI AATT 3 cut(s) 238, 331, 497
TatI WGTACW 2 cut(s) 624, 767
TfiI GAWTC 3 cut(s) 254, 506, 535
TscAI CASTG 1 cut(s) 688
TseI GCWGC 6 cut(s) 88, 122, 144, 408, 512, 572
TspDTI ATGAA 2 cut(s) 510, 527
TspGWI ACGGA 3 cut(s) 408, 497, 765
TspRI CASTG 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 2 cut(s) 117, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.