Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

35464505 .. 35468367

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTATAGGGAACGCGGAGGTGGGTCGTCGAAAACAGAGCTCCACCTAGAGAAGTCCTCCCCATCCACATCCAGAGCTTTGGCCAATAGTAAAGACAAAGAGAGGCTCTCTGTGCCCTCCACTTCCGCCGGAAAATCTCAGCTCGATCACCGCGCCGCCGCTGCCGCCGCCGCCTCGCTCGCCAAGAACAAGTGCTCCGATGAGGAATCTGAGACGGACAGTGAAGAATCAGATGTCAGTGGTTCTGATGGAGACGACACATCTTGGATTTCATGGTTCTGCAATTTGCGAGGAAACGAATTTTTTTGTGAAGTCGATGATGAATACATCCAAGATGATTTTAATCTCTGTGGTTTGAGCAGTCAAGTTCCGTATTATGATTATGCTCTTGATCTGATTTTAGATGTTGAATCTTCTCATGGTGATATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCGGCAGCGGAGATGCTATATGGTCTTATTCATGTTAGATACATATTGACAAGCAAAGGAATGTCTGCAATGTTGGAGAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCAGTTGGTCAATCTGACATTCCTCGATCAAGCACTGTAAAAATATACTGCCCCAAATGCGAAGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGAGCTTATTTCGGCACCACATTTCCGCACCTATTCTTGATGACGTATGGACACCTTAAACCACAAAAGGCTTCACAGAGTTATGTGCCAAGAGTTTTCGGCTTCAAGCTCCACAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

275

Amino Acids

30.8

Weight (kDa)

5.14

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	88 - 271	1.8e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	719
AccII	CGCG	2 cut(s)	15, 153
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	410, 458, 811
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	5 cut(s)	40, 77, 142, 710, 814
AluI	AGCT	5 cut(s)	40, 77, 142, 710, 814
Alw21I	GWGCWC	2 cut(s)	42, 197
Alw26I	GTCTC	2 cut(s)	206, 246
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	161, 464
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	140, 434
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	42, 197
BbvI	GCAGC	2 cut(s)	148, 476
BccI	CCATC	3 cut(s)	70, 242, 698
BcoDI	GTCTC	2 cut(s)	206, 246
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	7 cut(s)	156, 159, 162, 165, 168, 171, 465
BlsI	GCNGC	7 cut(s)	157, 160, 163, 166, 169, 172, 466
BmiI	GGNNCC	1 cut(s)	721
BmsI	GCATC	1 cut(s)	462
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 92, 124
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	3 cut(s)	62, 68, 327
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	152, 201
BseNI	ACTGG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	148, 476
Bsh1236I	CGCG	2 cut(s)	15, 153
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	2 cut(s)	42, 197
BsiSI	CCGG	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	206, 246
BsmBI	CGTCTC	2 cut(s)	206, 246
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	42, 117, 197
Bsp143I	GATC	4 cut(s)	145, 391, 626, 680
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	151, 202
BspFNI	CGCG	2 cut(s)	15, 153
BspLI	GGNNCC	1 cut(s)	721
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	4 cut(s)	145, 391, 626, 680
BssT1I	CCWWGG	1 cut(s)	691
Bst4CI	ACNGT	2 cut(s)	221, 637
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	138, 210
BstF5I	GGATG	3 cut(s)	62, 68, 327
BstFNI	CGCG	2 cut(s)	15, 153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	4 cut(s)	148, 394, 629, 683
BstMAI	GTCTC	2 cut(s)	206, 246
BstMBI	GATC	4 cut(s)	145, 391, 626, 680
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 161, 164, 167, 170, 179, 657
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	2 cut(s)	15, 153
BstV1I	GCAGC	2 cut(s)	148, 476
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	3 cut(s)	62, 68, 327
BtsIMutI	CAGTG	4 cut(s)	226, 244, 432, 633
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	3 cut(s)	273, 419, 491
CviJI	RGCY	9 cut(s)	40, 77, 83, 106, 142, 710, 776, 807, 814
CviKI_1	RGCY	9 cut(s)	40, 77, 83, 106, 142, 710, 776, 807, 814
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	2 cut(s)	138, 210
DpnI	GATC	4 cut(s)	147, 393, 628, 682
DpnII	GATC	4 cut(s)	145, 391, 626, 680
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	691
Esp3I	CGTCTC	2 cut(s)	206, 246
FaeI	CATG	3 cut(s)	276, 422, 494
FatI	CATG	3 cut(s)	272, 418, 490
Fnu4HI	GCNGC	7 cut(s)	156, 159, 162, 165, 168, 171, 465
FokI	GGATG	3 cut(s)	49, 55, 314
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	7 cut(s)	156, 159, 162, 165, 168, 171, 465
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	7 cut(s)	156, 159, 162, 165, 168, 171, 465
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	276, 422, 494
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	4 cut(s)	206, 227, 410, 458
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	140, 434
Hpy166II	GTNNAC	3 cut(s)	432, 577, 587
Hpy188I	TCNGA	6 cut(s)	199, 211, 232, 247, 396, 616
Hpy188III	TCNNGA	3 cut(s)	72, 389, 742
Hpy8I	GTNNAC	3 cut(s)	432, 577, 587
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	2 cut(s)	221, 637
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	2 cut(s)	282, 527
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 161, 164, 167, 170, 179, 657
HpyF3I	CTNAG	2 cut(s)	138, 210
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	3 cut(s)	276, 422, 494
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	145, 391, 626, 680
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	4 cut(s)	45, 200, 707, 819
LpnPI	CCDG	4 cut(s)	85, 142, 607, 615
Lsp1109I	GCAGC	2 cut(s)	148, 476
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	749
MalI	GATC	4 cut(s)	147, 393, 628, 682
MboI	GATC	4 cut(s)	145, 391, 626, 680
MboII	GAAGA	5 cut(s)	236, 405, 449, 573, 674
MhlI	GDGCHC	3 cut(s)	42, 117, 197
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	283, 299
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	9 cut(s)	11, 67, 96, 127, 184, 196, 284, 633, 687
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	342, 762
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	161, 467
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	2 cut(s)	15, 153
MwoI	GCNNNNNNNGC	7 cut(s)	112, 161, 164, 167, 170, 179, 657
NdeII	GATC	4 cut(s)	145, 391, 626, 680
NlaIII	CATG	3 cut(s)	276, 422, 494
NlaIV	GGNNCC	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	206, 227, 410, 458
PkrI	GCNGC	7 cut(s)	157, 160, 163, 166, 169, 172, 466
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	721
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	342, 762
SatI	GCNGC	7 cut(s)	156, 159, 162, 165, 168, 171, 465
Sau3AI	GATC	4 cut(s)	145, 391, 626, 680
SduI	GDGCHC	3 cut(s)	42, 117, 197
SfaNI	GCATC	1 cut(s)	462
Sse9I	AATT	2 cut(s)	283, 299
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	2 cut(s)	221, 637
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	5 cut(s)	29, 144, 315, 625, 679
TasI	AATT	2 cut(s)	283, 299
TauI	GCSGC	5 cut(s)	158, 161, 167, 170, 173
TfiI	GAWTC	4 cut(s)	206, 227, 410, 458
Tru1I	TTAA	2 cut(s)	342, 762
Tru9I	TTAA	2 cut(s)	342, 762
TscAI	CASTG	4 cut(s)	226, 244, 439, 640
TseI	GCWGC	2 cut(s)	161, 464
TspDTI	ATGAA	3 cut(s)	261, 336, 479
TspGWI	ACGGA	2 cut(s)	230, 360
TspRI	CASTG	4 cut(s)	226, 244, 439, 640
XapI	RAATTY	1 cut(s)	299
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.