Rmu_sc0003652.1_g000022

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003652.1
OG0001417
Physical Location & Seq
Forward (+)
84329 .. 87986
3658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003652.1_g000022.1.cds

Sequence Viewer

Length: 1059 bp
atgagactctacagtggcttgctgataagattccatgaacaactgaacaagtatgtccagtggcagattggagatggaattggactctgtttctctggtttagacgcttcgtccctccgttgtattcatgttcttctatcgataatgcagcttctgatcgccaaattcgccatcccaaaacgcatggcagcatatgagcaagtgttctgcttcccaaaacgcatagcagcatatgctgtccttaccgcacgtgacaaaaaacacactcccttaattggtgagtggaccccacatcggaggggggaatcggagaagaagaagaagaagaagaagaaggaagagatgtatagagagcgagggtcgggtgggtcgaagatgacggaggtgggggcggttgatcggaagcggatcaacgacgccttggacaagcagctggagcgatcgtcgccgtcgacttctagggctgcaatcaacggcaaggatggcagcagtaataagcctcttatcatgggggaggaatctgaaacagatagtgaagagtcagatgttagtggttcagatggggatgacacatcttggatatcatggttttgcaatttgagaggaaatgagtttttttgtgaagttgatgatgattatatacaagatgatttcaacctttgtgggctaagcagccaagttccgtattatgattatgcacttgatttgatcttggatgttgagtcttcacatggtgatatgtttacggaagaacaaaatgaattaattgaatcagcagcggagatgctctatggtctgattcatgtacgatatattttgaccagcaagggcatggctgccatgctagacaaatacaaaaactatgatttcgggagatgtccaagagtgtactgctgtggacaaccctgcctcccagttggccaatcagacatcccacggtcaagcactgtaaaaatatactgccccaagtgtgaagatatctactaccctcgatcgaagtatcaaggtagtatcctttgtatttataattctgcatttgaaactgctggctgcgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

352

Amino Acids

39.84

Weight (kDa)

5.81

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AccI GTMKAC 1 cut(s) 452
AciI CCGC 4 cut(s) 246, 392, 406, 779
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 734
AfaI GTAC 2 cut(s) 807, 890
AfiI CCNNNNNNNGG 2 cut(s) 275, 294
AgsI TTSAA 3 cut(s) 655, 770, 1040
AhdI GACNNNNNGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 151, 433
AluI AGCT 2 cut(s) 151, 433
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 1 cut(s) 919
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 290, 746
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 921
BbrPI CACGTG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 717
BccI CCATC 4 cut(s) 68, 179, 476, 554
BceAI ACGGC 2 cut(s) 433, 490
BciVI GTATCC 1 cut(s) 1022
BfaI CTAG 2 cut(s) 459, 845
BfmI CTRYAG 1 cut(s) 10
BfuI GTATCC 1 cut(s) 1022
BlpI GCTNAGC 1 cut(s) 668
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 1 cut(s) 774
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 668
Bsa29I ATCGAT 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 420, 935
BsaXI ACNNNNNCTCC 4 cut(s) 428, 458, 894, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 294
Bse1I ACTGG 2 cut(s) 58, 914
BseCI ATCGAT 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 420, 935
BseGI GGATG 5 cut(s) 171, 487, 571, 721, 930
BseLI CCNNNNNNNGG 2 cut(s) 275, 294
BseNI ACTGG 2 cut(s) 58, 914
Bsh1285I CGRYCG 2 cut(s) 443, 995
BshFI GGCC 1 cut(s) 921
BshVI ATCGAT 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 443, 995
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 275, 294
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 921
Bsp143I GATC 6 cut(s) 156, 397, 408, 440, 708, 992
Bsp1720I GCTNAGC 1 cut(s) 668
BspACI CCGC 4 cut(s) 246, 392, 406, 779
BspANI GGCC 1 cut(s) 921
BspDI ATCGAT 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 416
BsrI ACTGG 2 cut(s) 58, 914
BssECI CCNNGG 2 cut(s) 420, 935
BssMI GATC 6 cut(s) 156, 397, 408, 440, 708, 992
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 14, 939, 949
Bst6I CTCTTC 2 cut(s) 333, 531
BstACI GRCGYC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 20, 1048
BstDEI CTNAG 1 cut(s) 668
BstDSI CCRYGG 1 cut(s) 935
BstF5I GGATG 5 cut(s) 171, 487, 571, 721, 930
BstKTI GATC 6 cut(s) 159, 400, 411, 443, 711, 995
BstMBI GATC 6 cut(s) 156, 397, 408, 440, 708, 992
BstMCI CGRYCG 2 cut(s) 443, 995
BstMWI GCNNNNNNNGC 5 cut(s) 167, 233, 436, 445, 483
BstSFI CTRYAG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 717
Bsu15I ATCGAT 1 cut(s) 140
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 1 cut(s) 921
BsuTUI ATCGAT 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 935
BtsCI GGATG 5 cut(s) 171, 487, 571, 721, 930
BtsIMutI CAGTG 3 cut(s) 19, 65, 945
Cac8I GCNNGC 2 cut(s) 20, 1048
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 140
CseI GACGC 2 cut(s) 113, 425
Csp6I GTAC 2 cut(s) 806, 889
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 9 cut(s) 35, 128, 184, 508, 585, 731, 803, 832, 841
CviQI GTAC 2 cut(s) 806, 889
DdeI CTNAG 1 cut(s) 668
DpnI GATC 6 cut(s) 158, 399, 410, 442, 710, 994
DpnII GATC 6 cut(s) 156, 397, 408, 440, 708, 992
DraIII CACNNNGTG 1 cut(s) 734
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 2 cut(s) 333, 531
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 2 cut(s) 333, 531
Eco130I CCWWGG 1 cut(s) 420
Eco32I GATATC 2 cut(s) 582, 979
Eco47I GGWCC 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 251
EcoRV GATATC 2 cut(s) 582, 979
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 9 cut(s) 38, 131, 187, 511, 588, 734, 806, 835, 844
FaqI GGGAC 1 cut(s) 97
FatI CATG 9 cut(s) 34, 127, 183, 507, 584, 730, 802, 831, 840
FauNDI CATATG 2 cut(s) 193, 232
FblI GTMKAC 1 cut(s) 452
FokI GGATG 5 cut(s) 158, 494, 578, 728, 917
FspBI CTAG 2 cut(s) 459, 845
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 1 cut(s) 921
HgaI GACGC 2 cut(s) 113, 425
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 9 cut(s) 38, 131, 187, 511, 588, 734, 806, 835, 844
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 9 cut(s) 6, 30, 84, 305, 518, 539, 722, 770, 799
HphI GGTGA 2 cut(s) 290, 746
Hpy166II GTNNAC 5 cut(s) 285, 453, 744, 889, 899
Hpy188I TCNGA 9 cut(s) 156, 297, 310, 402, 523, 544, 559, 798, 928
Hpy188III TCNNGA 1 cut(s) 871
Hpy8I GTNNAC 5 cut(s) 285, 453, 744, 889, 899
Hpy99I CGWCG 3 cut(s) 419, 448, 454
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 3 cut(s) 14, 939, 949
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 148, 467, 594, 698, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 233, 436, 445, 483
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 9 cut(s) 38, 131, 187, 511, 588, 734, 806, 835, 844
Kzo9I GATC 6 cut(s) 156, 397, 408, 440, 708, 992
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 71, 81, 419, 835, 919, 927, 1032
LweI GCATC 1 cut(s) 774
MaeI CTAG 2 cut(s) 459, 845
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 251
MalI GATC 6 cut(s) 158, 399, 410, 442, 710, 994
MboI GATC 6 cut(s) 156, 397, 408, 440, 708, 992
MlsI TGGCCA 1 cut(s) 921
MluCI AATT 7 cut(s) 78, 164, 273, 595, 761, 765, 1027
MluNI TGGCCA 1 cut(s) 921
MlyI GAGTC 3 cut(s) 78, 548, 731
MnlI CCTC 9 cut(s) 125, 291, 350, 376, 508, 510, 596, 920, 999
Mox20I TGGCCA 1 cut(s) 921
MscI TGGCCA 1 cut(s) 921
MseI TTAA 2 cut(s) 272, 764
Msp20I TGGCCA 1 cut(s) 921
MspA1I CMGCKG 2 cut(s) 433, 779
MwoI GCNNNNNNNGC 5 cut(s) 167, 233, 436, 445, 483
NdeI CATATG 2 cut(s) 193, 232
NdeII GATC 6 cut(s) 156, 397, 408, 440, 708, 992
NlaIII CATG 9 cut(s) 38, 131, 187, 511, 588, 734, 806, 835, 844
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 368, 449
PfeI GAWTC 5 cut(s) 30, 305, 518, 770, 799
Ple19I CGATCG 2 cut(s) 443, 995
PleI GAGTC 3 cut(s) 78, 547, 730
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 3 cut(s) 78, 547, 730
Ppu21I YACGTR 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 1026
PspCI CACGTG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 154
PvuI CGATCG 2 cut(s) 443, 995
PvuII CAGCTG 1 cut(s) 433
RsaI GTAC 2 cut(s) 807, 890
RsaNI GTAC 2 cut(s) 806, 889
SalI GTCGAC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 272, 764
Sau3AI GATC 6 cut(s) 156, 397, 408, 440, 708, 992
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 3 cut(s) 78, 548, 731
SetI ASST 6 cut(s) 153, 253, 387, 435, 660, 1009
SfaNI GCATC 1 cut(s) 774
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 285
Sse9I AATT 7 cut(s) 78, 164, 273, 595, 761, 765, 1027
SsiI CCGC 4 cut(s) 246, 392, 406, 779
SspMI CTAG 2 cut(s) 459, 845
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 3 cut(s) 14, 939, 949
TaiI ACGT 1 cut(s) 253
TaqI TCGA 5 cut(s) 140, 371, 452, 991, 995
TasI AATT 7 cut(s) 78, 164, 273, 595, 761, 765, 1027
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 5 cut(s) 30, 305, 518, 770, 799
Tru1I TTAA 2 cut(s) 272, 764
Tru9I TTAA 2 cut(s) 272, 764
TscAI CASTG 3 cut(s) 19, 65, 952
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 4 cut(s) 51, 116, 774, 791
TspGWI ACGGA 4 cut(s) 107, 395, 672, 761
TspRI CASTG 3 cut(s) 19, 65, 952
VpaK11BI GGWCC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 764
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 829
XmiI GTMKAC 1 cut(s) 452
XspI CTAG 2 cut(s) 459, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.