Rroxscaffold_3G00251510

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001417
Physical Location & Seq
Reverse (-)
45377508 .. 45380698
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251510.1

Sequence Viewer

Length: 678 bp
ATGTATAGAGAGCGAGGGTCGGGTGGGTCGAAGATGACGGAGGTGGGGGCGGTTGATCGGAAGCGGATCAACGACGCCTTGGACAAGCAGCTGGAGCGATCGTCGCCGTCGACTTCTAGGGCTGCAATCAACGGCAAGGATGGCAGCAGTAATAAGCCTCTTATCATGGGGGGTAAGGGTTTGATATCTGATCATCGTAGAGACTCTCGCTCTGCCTCTGCTTCTCTATCCAAAACCAATTGCTCTGATGAGGAATCTGAAACAGATAGTGAAGAGTCAGATGTTAGTGCAGCCAAGTTCCCGTATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCTTCACATGGTGATATGTTTACGGAAGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTCTATGGTCTGATTCATGTACGATATATTTTGACCAGCAAAGGCATGGCTGCCATGCTAGACAAATACAAGAACTATGATTTCGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGGTAGTATCCTTTGTATTTATAATTCTGCATTTGAAACTGCTGGCTGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

225

Amino Acids

24.9

Weight (kDa)

5.35

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 98 - 209 9e-40 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AccI GTMKAC 1 cut(s) 110
AciI CCGC 2 cut(s) 50, 64
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 2 cut(s) 426, 509
AgsI TTSAA 2 cut(s) 389, 659
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 538
ApeKI GCWGC 7 cut(s) 88, 122, 144, 290, 395, 455, 669
AseI ATTAAT 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 365
BalI TGGCCA 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 7 cut(s) 100, 109, 156, 302, 407, 442, 656
BccI CCATC 1 cut(s) 134
BceAI ACGGC 2 cut(s) 91, 148
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 2 cut(s) 117, 464
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 7 cut(s) 89, 123, 145, 291, 396, 456, 670
BlsI GCNGC 7 cut(s) 90, 124, 146, 292, 397, 457, 671
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 78, 554
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 513, 543
Bse1I ACTGG 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 78, 554
BseGI GGATG 3 cut(s) 145, 340, 549
BseNI ACTGG 1 cut(s) 533
BseXI GCAGC 7 cut(s) 100, 109, 156, 302, 407, 442, 656
BsgI GTGCAG 1 cut(s) 309
Bsh1285I CGRYCG 2 cut(s) 101, 614
BshFI GGCC 1 cut(s) 540
BsiEI CGRYCG 2 cut(s) 101, 614
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 1 cut(s) 540
Bsp143I GATC 6 cut(s) 55, 66, 98, 190, 327, 611
BspACI CCGC 2 cut(s) 50, 64
BspANI GGCC 1 cut(s) 540
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 78, 554
BssMI GATC 6 cut(s) 55, 66, 98, 190, 327, 611
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 558, 568
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 667
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 3 cut(s) 145, 340, 549
BstKTI GATC 6 cut(s) 58, 69, 101, 193, 330, 614
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 6 cut(s) 55, 66, 98, 190, 327, 611
BstMCI CGRYCG 2 cut(s) 101, 614
BstMWI GCNNNNNNNGC 3 cut(s) 94, 103, 141
BstV1I GCAGC 7 cut(s) 100, 109, 156, 302, 407, 442, 656
BstV2I GAAGAC 1 cut(s) 336
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 540
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 145, 340, 549
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 667
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 425, 508
CviAII CATG 5 cut(s) 166, 350, 422, 451, 460
CviJI RGCY 7 cut(s) 91, 122, 157, 293, 455, 540, 669
CviKI_1 RGCY 7 cut(s) 91, 122, 157, 293, 455, 540, 669
CviQI GTAC 2 cut(s) 425, 508
DpnI GATC 6 cut(s) 57, 68, 100, 192, 329, 613
DpnII GATC 6 cut(s) 55, 66, 98, 190, 327, 611
DraIII CACNNNGTG 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 2 cut(s) 186, 598
EcoRV GATATC 2 cut(s) 186, 598
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 5 cut(s) 169, 353, 425, 454, 463
FatI CATG 5 cut(s) 165, 349, 421, 450, 459
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 7 cut(s) 89, 123, 145, 291, 396, 456, 670
FokI GGATG 3 cut(s) 152, 347, 536
Fsp4HI GCNGC 7 cut(s) 89, 123, 145, 291, 396, 456, 670
FspBI CTAG 2 cut(s) 117, 464
GluI GCNGC 7 cut(s) 89, 123, 145, 291, 396, 456, 670
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 540
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 5 cut(s) 169, 353, 425, 454, 463
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 6 cut(s) 203, 254, 275, 341, 389, 418
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 4 cut(s) 111, 363, 508, 518
Hpy188I TCNGA 7 cut(s) 60, 190, 247, 259, 280, 417, 547
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 4 cut(s) 111, 363, 508, 518
Hpy99I CGWCG 3 cut(s) 77, 106, 112
HpyCH4III ACNGT 2 cut(s) 558, 568
HpyCH4V TGCA 4 cut(s) 125, 290, 317, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 103, 141
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 5 cut(s) 169, 353, 425, 454, 463
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 55, 66, 98, 190, 327, 611
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 77, 454, 538, 546, 651
Lsp1109I GCAGC 7 cut(s) 100, 109, 156, 302, 407, 442, 656
LweI GCATC 1 cut(s) 393
MaeI CTAG 2 cut(s) 117, 464
MalI GATC 6 cut(s) 57, 68, 100, 192, 329, 613
MboI GATC 6 cut(s) 55, 66, 98, 190, 327, 611
MboII GAAGA 5 cut(s) 43, 284, 336, 380, 605
MfeI CAATTG 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 4 cut(s) 238, 380, 384, 646
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 3 cut(s) 197, 284, 350
MnlI CCTC 7 cut(s) 8, 34, 168, 226, 244, 539, 618
Mox20I TGGCCA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 540
MseI TTAA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 91
MunI CAATTG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 94, 103, 141
NdeII GATC 6 cut(s) 55, 66, 98, 190, 327, 611
NlaIII CATG 5 cut(s) 169, 353, 425, 454, 463
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 107
PfeI GAWTC 3 cut(s) 254, 389, 418
PkrI GCNGC 7 cut(s) 90, 124, 146, 292, 397, 457, 671
Ple19I CGATCG 2 cut(s) 101, 614
PleI GAGTC 3 cut(s) 197, 283, 349
PpsI GAGTC 3 cut(s) 197, 283, 349
PshBI ATTAAT 1 cut(s) 383
PsiI TTATAA 1 cut(s) 645
PvuI CGATCG 2 cut(s) 101, 614
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 426, 509
RsaNI GTAC 2 cut(s) 425, 508
SalI GTCGAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 7 cut(s) 89, 123, 145, 291, 396, 456, 670
Sau3AI GATC 6 cut(s) 55, 66, 98, 190, 327, 611
SchI GAGTC 3 cut(s) 197, 284, 350
SetI ASST 3 cut(s) 45, 93, 628
SfaNI GCATC 1 cut(s) 393
Sse9I AATT 4 cut(s) 238, 380, 384, 646
SsiI CCGC 2 cut(s) 50, 64
SspMI CTAG 2 cut(s) 117, 464
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 558, 568
TaqI TCGA 4 cut(s) 29, 110, 610, 614
TasI AATT 4 cut(s) 238, 380, 384, 646
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 3 cut(s) 254, 389, 418
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 571
TseI GCWGC 7 cut(s) 88, 122, 144, 290, 395, 455, 669
TspDTI ATGAA 2 cut(s) 393, 410
TspGWI ACGGA 2 cut(s) 53, 380
TspRI CASTG 1 cut(s) 571
VspI ATTAAT 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 2 cut(s) 117, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.