Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Forward (+)

31288279 .. 31292760

Gene Structure 4482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTATAGGGAACGCGGAGGTGGGTCGTCGAAAACAGAGCTCGTCGGTGGGCCGCTGGACCGTAAGCGCATCAACGATGCTCTGGACAAGCACCTAGAGAAGTCCTCCCCATCCACATCCAGAGCTTTGGCCAATAGTAAAGACAAAGAGAGGCTCTCTGTGCCCTCCACTTCTGCTGGAAAGTCTCAGCTCGATCACCGTGCCGCCGCTGCCGCCGCCGCCTCGCTCGCCAAGAACAAGTGCTCCGATGAGGAATCTGAGACGGACAGTGAAGAATCAGATGTCAGTGGTTCTGATGGAGACGACACATCTTGGATTTCATGGTTCTGCAATTTGCGAGGAAACGAATTTTTTTGTGAAGTCGATGATGAATACATCCAAGATGATTTTAATCTCTGTGGTTTGAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTGATTTTAGATGTTGAATCTTCTCATGGTGATATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCAGCAGCAGAGATGCTATATGGTCTTATTCATGTTAGATACATATTGACAAGCAAAGGAATGTCTGCAATGTTGGAGAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTACTGCTGCGGACAACCCTGCCTTCCAGTTGGTCAATCTGACATTCCTCGATCAAGCACTGTAAAAATATACTGCCCCAAATGCGAAGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGAGCTTATTTCGGCACCACATTTCCGCACCTATTCTTGATGACGTATGGACACCTTAAACCACAAAAGGCTTCACAGAGTTATGTGCCAAGAGTTTTCGGCTTCAAGCTCCACAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

291

Amino Acids

32.55

Weight (kDa)

5.25

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	104 - 287	2.2e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	767
AccII	CGCG	1 cut(s)	15
AciI	CCGC	9 cut(s)	15, 53, 204, 207, 213, 216, 219, 633, 779
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	737
AgsI	TTSAA	3 cut(s)	458, 506, 859
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	40, 125, 190, 758, 862
AluI	AGCT	5 cut(s)	40, 125, 190, 758, 862
Alw21I	GWGCWC	2 cut(s)	42, 245
Alw26I	GTCTC	3 cut(s)	189, 254, 294
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	2 cut(s)	50, 129
ApeKI	GCWGC	3 cut(s)	209, 512, 630
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	50, 58
AsuHPI	GGTGA	2 cut(s)	188, 482
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	42, 245
BbvI	GCAGC	3 cut(s)	196, 524, 617
BccI	CCATC	3 cut(s)	118, 290, 746
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcoDI	GTCTC	3 cut(s)	189, 254, 294
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	9 cut(s)	53, 204, 207, 210, 213, 216, 219, 513, 631
BlsI	GCNGC	9 cut(s)	54, 205, 208, 211, 214, 217, 220, 514, 632
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	50, 58
BmiI	GGNNCC	1 cut(s)	769
BmsI	GCATC	3 cut(s)	67, 78, 510
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 140, 172
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	3 cut(s)	110, 116, 375
BseJI	GATNNNNATC	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	200, 249
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	196, 524, 617
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	52, 131
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	2 cut(s)	42, 245
BsmAI	GTCTC	3 cut(s)	189, 254, 294
BsmBI	CGTCTC	2 cut(s)	254, 294
BsnI	GGCC	2 cut(s)	52, 131
Bsp1286I	GDGCHC	3 cut(s)	42, 165, 245
Bsp143I	GATC	4 cut(s)	193, 439, 674, 728
BspACI	CCGC	9 cut(s)	15, 53, 204, 207, 213, 216, 219, 633, 779
BspANI	GGCC	2 cut(s)	52, 131
BspCNI	CTCAG	2 cut(s)	199, 250
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	1 cut(s)	723
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	4 cut(s)	193, 439, 674, 728
BssT1I	CCWWGG	1 cut(s)	739
Bst4CI	ACNGT	4 cut(s)	62, 200, 269, 685
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	186, 258
BstF5I	GGATG	3 cut(s)	110, 116, 375
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	196, 442, 677, 731
BstMAI	GTCTC	3 cut(s)	189, 254, 294
BstMBI	GATC	4 cut(s)	193, 439, 674, 728
BstMWI	GCNNNNNNNGC	7 cut(s)	160, 209, 212, 215, 218, 227, 705
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	196, 524, 617
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	52, 131
BtsCI	GGATG	3 cut(s)	110, 116, 375
BtsIMutI	CAGTG	4 cut(s)	274, 292, 480, 681
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	50, 58
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	3 cut(s)	321, 467, 539
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	2 cut(s)	186, 258
DpnI	GATC	4 cut(s)	195, 441, 676, 730
DpnII	GATC	4 cut(s)	193, 439, 674, 728
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	739
Esp3I	CGTCTC	2 cut(s)	254, 294
FaeI	CATG	3 cut(s)	324, 470, 542
FatI	CATG	3 cut(s)	320, 466, 538
Fnu4HI	GCNGC	9 cut(s)	53, 204, 207, 210, 213, 216, 219, 513, 631
FokI	GGATG	3 cut(s)	97, 103, 362
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	9 cut(s)	53, 204, 207, 210, 213, 216, 219, 513, 631
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	9 cut(s)	53, 204, 207, 210, 213, 216, 219, 513, 631
HaeIII	GGCC	2 cut(s)	52, 131
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	324, 470, 542
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	254, 275, 458, 506
HphI	GGTGA	2 cut(s)	188, 482
Hpy166II	GTNNAC	2 cut(s)	480, 625
Hpy188I	TCNGA	6 cut(s)	247, 259, 280, 295, 444, 664
Hpy188III	TCNNGA	4 cut(s)	83, 120, 437, 790
Hpy8I	GTNNAC	2 cut(s)	480, 625
Hpy99I	CGWCG	2 cut(s)	31, 47
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	4 cut(s)	62, 200, 269, 685
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	2 cut(s)	330, 575
HpyF10VI	GCNNNNNNNGC	7 cut(s)	160, 209, 212, 215, 218, 227, 705
HpyF3I	CTNAG	2 cut(s)	186, 258
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	3 cut(s)	324, 470, 542
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	193, 439, 674, 728
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	248, 755, 867
LpnPI	CCDG	6 cut(s)	41, 68, 133, 162, 655, 663
Lsp1109I	GCAGC	3 cut(s)	196, 524, 617
LweI	GCATC	3 cut(s)	67, 78, 510
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	797
MalI	GATC	4 cut(s)	195, 441, 676, 730
MboI	GATC	4 cut(s)	193, 439, 674, 728
MboII	GAAGA	5 cut(s)	284, 453, 497, 621, 722
MhlI	GDGCHC	3 cut(s)	42, 165, 245
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	331, 347
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	9 cut(s)	11, 115, 144, 175, 232, 244, 332, 681, 735
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	390, 810
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	55, 209
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	7 cut(s)	160, 209, 212, 215, 218, 227, 705
NdeII	GATC	4 cut(s)	193, 439, 674, 728
NlaIII	CATG	3 cut(s)	324, 470, 542
NlaIV	GGNNCC	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	4 cut(s)	254, 275, 458, 506
PkrI	GCNGC	9 cut(s)	54, 205, 208, 211, 214, 217, 220, 514, 632
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	2 cut(s)	50, 58
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	390, 810
SatI	GCNGC	9 cut(s)	53, 204, 207, 210, 213, 216, 219, 513, 631
Sau3AI	GATC	4 cut(s)	193, 439, 674, 728
Sau96I	GGNCC	2 cut(s)	50, 58
SduI	GDGCHC	3 cut(s)	42, 165, 245
SfaNI	GCATC	3 cut(s)	67, 78, 510
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	331, 347
SsiI	CCGC	9 cut(s)	15, 53, 204, 207, 213, 216, 219, 633, 779
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	4 cut(s)	62, 200, 269, 685
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	5 cut(s)	29, 192, 363, 673, 727
TasI	AATT	2 cut(s)	331, 347
TauI	GCSGC	6 cut(s)	55, 206, 209, 215, 218, 221
TfiI	GAWTC	4 cut(s)	254, 275, 458, 506
Tru1I	TTAA	2 cut(s)	390, 810
Tru9I	TTAA	2 cut(s)	390, 810
TscAI	CASTG	4 cut(s)	274, 292, 487, 688
TseI	GCWGC	3 cut(s)	209, 512, 630
TspDTI	ATGAA	3 cut(s)	309, 384, 527
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	4 cut(s)	274, 292, 487, 688
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	347
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.