RLG00000003312

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001417
Physical Location & Seq
Reverse (-)
46998310 .. 47002138
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003312

Sequence Viewer

Length: 798 bp
ATGTATAGAGAGCGAGGGTCGGGTGGGTCGAAGATGACGGAGGTGGGGGCGGTTGATCGGAAGCGGATCAACGACGCCTTGGACAAGCAGCTGGAGCGATCGTCGCCGTCGACTTCTAGGGCGGCAATCAACGGCAAGGATAGCAGCAGTAATAAGCCTCTTATCATGGGGGAGGAATCTGAAACAGATAGTGAAGAGTCAGATGTTAGTGGTTCAGATGGGGATGATACATCTTGGATATCATGGTTTTGCAATTTGAGAGGAAATGAGTTTTTTTGTGAAGTTGATGATGATTATATACAAGATGATTTCAACCTTTGTGGGCTAAGCAGCCAAGTTCCATATTATGATTATGCACTTGATTTGATCTTGGATGTTGAGTCTTCACATGGTGATATGTTTACGGAAGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTCTATGGTCTGATTCATGTACGATATATCTTGACAAGCAAGGGCATGGCTGCCATGCTAGACAAATACAAGAACTATGATTTTGGGAGATGTCCAAGAGTGTACTGCTGTGGACAACCCTGCCTCCCAGTTGGCCAATCAGACATCCCACGGTCAAGCACTGTAAAAATATACTGCCCCAAGTGTGAAGATATCTACTACCCTCGATCGAAGTATCAAGGTAACATTGACGGAGCCTATTTCGGAAGTACATTTCCTCACCTGTTCTTGATGACATACGGGCACCTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTGTTTGGCTTCAAGCTTCACAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

266

Amino Acids

29.94

Weight (kDa)

4.9

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 78 - 261 4.7e-77 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 726
AccI GTMKAC 1 cut(s) 110
AciI CCGC 3 cut(s) 50, 64, 122
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 752
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 465, 548, 694
AgsI TTSAA 3 cut(s) 313, 428, 781
AluBI AGCT 3 cut(s) 91, 756, 784
AluI AGCT 3 cut(s) 91, 756, 784
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 5 cut(s) 88, 144, 330, 434, 494
AseI ATTAAT 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 404, 695
BaeGI GKGCMC 1 cut(s) 729
BalI TGGCCA 1 cut(s) 579
BanI GGYRCC 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 5 cut(s) 100, 156, 342, 446, 481
BccI CCATC 2 cut(s) 212, 754
BceAI ACGGC 2 cut(s) 91, 148
BfaI CTAG 2 cut(s) 117, 503
BisI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 6 cut(s) 90, 124, 146, 332, 436, 496
BmiI GGNNCC 2 cut(s) 679, 728
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 566
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 78, 593
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 552, 582
Bse1I ACTGG 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 78, 593
BseGI GGATG 3 cut(s) 229, 379, 588
BseNI ACTGG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 5 cut(s) 100, 156, 342, 446, 481
Bsh1285I CGRYCG 2 cut(s) 101, 653
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 726
BsiEI CGRYCG 2 cut(s) 101, 653
BsnI GGCC 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 5 cut(s) 55, 66, 98, 366, 650
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 3 cut(s) 50, 64, 122
BspANI GGCC 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 679, 728
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 726
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 78, 593
BssMI GATC 5 cut(s) 55, 66, 98, 366, 650
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 597, 607
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 593
BstF5I GGATG 3 cut(s) 229, 379, 588
BstKTI GATC 5 cut(s) 58, 69, 101, 369, 653
BstMBI GATC 5 cut(s) 55, 66, 98, 366, 650
BstMCI CGRYCG 2 cut(s) 101, 653
BstMWI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 733, 742, 790
BstSLI GKGCMC 1 cut(s) 729
BstV1I GCAGC 5 cut(s) 100, 156, 342, 446, 481
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 593
BtsCI GGATG 3 cut(s) 229, 379, 588
BtsIMutI CAGTG 1 cut(s) 603
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 464, 547, 693
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 7 cut(s) 166, 243, 389, 461, 490, 499, 795
CviQI GTAC 3 cut(s) 464, 547, 693
DdeI CTNAG 1 cut(s) 326
DpnI GATC 5 cut(s) 57, 68, 100, 368, 652
DpnII GATC 5 cut(s) 55, 66, 98, 366, 650
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 2 cut(s) 240, 637
Eco57I CTGAAG 1 cut(s) 752
EcoRV GATATC 2 cut(s) 240, 637
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 7 cut(s) 169, 246, 392, 464, 493, 502, 798
FatI CATG 7 cut(s) 165, 242, 388, 460, 489, 498, 794
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
FokI GGATG 3 cut(s) 236, 386, 575
Fsp4HI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
FspBI CTAG 2 cut(s) 117, 503
GluI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 579
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 7 cut(s) 169, 246, 392, 464, 493, 502, 798
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 5 cut(s) 176, 197, 380, 428, 457
HphI GGTGA 2 cut(s) 404, 695
Hpy166II GTNNAC 4 cut(s) 111, 402, 547, 557
Hpy188I TCNGA 7 cut(s) 60, 181, 202, 217, 456, 586, 689
Hpy188III TCNNGA 2 cut(s) 475, 712
Hpy8I GTNNAC 4 cut(s) 111, 402, 547, 557
Hpy99I CGWCG 3 cut(s) 77, 106, 112
HpyCH4III ACNGT 2 cut(s) 597, 607
HpyCH4V TGCA 2 cut(s) 252, 356
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 733, 742, 790
HpyF3I CTNAG 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 7 cut(s) 169, 246, 392, 464, 493, 502, 798
Kzo9I GATC 5 cut(s) 55, 66, 98, 366, 650
LmnI GCTCC 2 cut(s) 94, 677
LpnPI CCDG 5 cut(s) 77, 577, 585, 719, 743
Lsp1109I GCAGC 5 cut(s) 100, 156, 342, 446, 481
LweI GCATC 1 cut(s) 432
MaeI CTAG 2 cut(s) 117, 503
MaeIII GTNAC 1 cut(s) 665
MalI GATC 5 cut(s) 57, 68, 100, 368, 652
MboI GATC 5 cut(s) 55, 66, 98, 366, 650
MboII GAAGA 5 cut(s) 43, 206, 375, 419, 644
MhlI GDGCHC 1 cut(s) 729
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 3 cut(s) 253, 419, 423
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 2 cut(s) 206, 389
MnlI CCTC 8 cut(s) 8, 34, 166, 168, 254, 578, 657, 711
Mox20I TGGCCA 1 cut(s) 579
MscI TGGCCA 1 cut(s) 579
MseI TTAA 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 91
MwoI GCNNNNNNNGC 6 cut(s) 94, 103, 141, 733, 742, 790
NdeII GATC 5 cut(s) 55, 66, 98, 366, 650
NlaIII CATG 7 cut(s) 169, 246, 392, 464, 493, 502, 798
NlaIV GGNNCC 2 cut(s) 679, 728
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 107
PfeI GAWTC 3 cut(s) 176, 428, 457
PkrI GCNGC 6 cut(s) 90, 124, 146, 332, 436, 496
Ple19I CGATCG 2 cut(s) 101, 653
PleI GAGTC 2 cut(s) 205, 388
PpsI GAGTC 2 cut(s) 205, 388
PshBI ATTAAT 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 679, 728
PvuI CGATCG 2 cut(s) 101, 653
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 3 cut(s) 465, 548, 694
RsaNI GTAC 3 cut(s) 464, 547, 693
SalI GTCGAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 6 cut(s) 89, 123, 145, 331, 435, 495
Sau3AI GATC 5 cut(s) 55, 66, 98, 366, 650
SchI GAGTC 2 cut(s) 206, 389
SduI GDGCHC 1 cut(s) 729
SetI ASST 8 cut(s) 45, 93, 318, 667, 708, 732, 758, 786
SfaNI GCATC 1 cut(s) 432
Sse9I AATT 3 cut(s) 253, 419, 423
SsiI CCGC 3 cut(s) 50, 64, 122
SspMI CTAG 2 cut(s) 117, 503
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 597, 607
TaqI TCGA 4 cut(s) 29, 110, 649, 653
TasI AATT 3 cut(s) 253, 419, 423
TatI WGTACW 2 cut(s) 546, 692
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 176, 428, 457
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 610
TseI GCWGC 5 cut(s) 88, 144, 330, 434, 494
TspDTI ATGAA 2 cut(s) 432, 449
TspGWI ACGGA 3 cut(s) 53, 419, 690
TspRI CASTG 1 cut(s) 610
VspI ATTAAT 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 2 cut(s) 117, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.