Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001417

Physical Location & Seq

Genomic Coordinates Reverse (-)

10195338 .. 10199193

Gene Structure 3856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1094900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTATAGGGAACGTGGCGGTGGAGGCGGTGGCGGGTCGTCGAAAACAGAGATTGTTGGTGGGTCGCTAGACCGCAAGCGCATCAACGATGCGCTGGACAAGCACCTAGAGAAGTCCACCCCATCCACATCGAGAGCTTTGGCTAACAGTAAAGACAAAGAGAGGCTCTCTGTGCCCTCCACTTCCGCTGGTAAATCTCAGCTTGATCACCGTGCGGTGGCAGCCACGGCCGCCTCGCTCGCCAAGAACAAATGCTCTGATGAGGAATCTGAAACAGACAGTGAAGAATCAGATGTCAGTGGTTCTGATGGAGATGACACTTCTTGGATTTCATGGTTCTGCAATTTGCGAGGGAATGAATTTTTTTGTGAAGTTGATGATGAATACATCCAAGATGATTTTAATCTCTGTGGATTGAGCAGTCAAGTTCCATATTATGATTATGCACTTGATCTGATTTTGGATGTTGAGTCTTCTCATGGTGATATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCAGCAGCTGAGATGCTATACGGTCTTATTCATGTTCGATACATACTGACTAGCAAAGGAATGTCTGCAATGTTGGAGAAGTACAAGAACTATGACTTTGGAAGATGCCCAAGAGTGTACTGCTGTGGACAACCTTGCCTTCCAGTTGGTCAATCGGACATTCCTCGTTCAAGCACTGTAAAAATATACTGCCCCAAGTGCGAAGATATATATTACCCTCGATCGAAGTACCAAGGCAATATTGATGGAGCGTATTTTGGAACCACATTTCCGCACCTATTCTTGATGACTTATGGACACCTTAAGCCACAAAAGGCGACACAGAGTTATGTTCCAAGAGTTTTTGGTTTCAAGCTCCACAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

296

Amino Acids

32.86

Weight (kDa)

5.25

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	108 - 291	2.2e-77	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44680 AT2G44680 AT2G44680 AT3G60250 AT3G60250 AT3G60250
fragaria_vesca	FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_5g20700 FvH4_7g09090
malus_domestica	MD02G1221400.v1.1 MD06G1044800.v1.1 MD07G1094900.v1.1
prunus_persica	Prupe.2G119400_v2.0.a1 Prupe.2G119400_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1 Prupe.5G053000_v2.0.a1
pyrus_communis	pycom02g18690 pycom04g04720 pycom06g03810 pycom07g07820
rosa_chinensis	RchiOBHm_Chr1g0344941 RchiOBHm_Chr7g0206431
rosa_laevigata	RLG00000003312 RLG00000028865
rosa_multiflora	Rmu_sc0000390.1_g000005 Rmu_sc0003179.1_g000030 Rmu_sc0003652.1_g000022 Rmu_sc0005065.1_g000027 Rmu_sc0010057.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251510 Rroxscaffold_4G00309500
rosa_rugosa	Rorug01G0175200 Rorug07G0097500.1 Rorug07G0097600 Rorug07G0097600 Rorug07G0097700 Rorug07G0097700
rosa_samantha	Rh4DG119000 Rh7AG229200 Rh7BG225600 Rh7CG243700 Rh7DG236100
rosa_wichuraiana	Rw1G008730 Rw1G015900 Rw2G005570 Rw7G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	18, 27, 33, 73, 186, 215, 231, 791
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	3 cut(s)	602, 638, 749
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	3 cut(s)	518, 690, 871
AloI	GAACNNNNNNTCC	2 cut(s)	772, 804
AluBI	AGCT	4 cut(s)	137, 202, 527, 874
AluI	AGCT	4 cut(s)	137, 202, 527, 874
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	221, 524
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	81, 94
AsuHPI	GGTGA	2 cut(s)	200, 494
BaeGI	GKGCMC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	233, 536
BccI	CCATC	3 cut(s)	130, 302, 758
BceAI	ACGGC	2 cut(s)	243, 868
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	3 cut(s)	68, 107, 570
BfrI	CTTAAG	1 cut(s)	821
BisI	GCNGC	3 cut(s)	222, 231, 525
BlsI	GCNGC	3 cut(s)	223, 232, 526
BmiI	GGNNCC	1 cut(s)	781
BmsI	GCATC	4 cut(s)	79, 90, 522, 614
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	225, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	225, 751
BseGI	GGATG	3 cut(s)	122, 387, 469
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	212, 519
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	233, 536
Bsh1285I	CGRYCG	2 cut(s)	231, 743
BshFI	GGCC	1 cut(s)	230
BsiEI	CGRYCG	2 cut(s)	231, 743
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	205, 451, 740
BspACI	CCGC	8 cut(s)	18, 27, 33, 73, 186, 215, 231, 791
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	211, 520
BspLI	GGNNCC	1 cut(s)	781
BspQI	GCTCTTC	1 cut(s)	492
BspTI	CTTAAG	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	2 cut(s)	225, 751
BssMI	GATC	3 cut(s)	205, 451, 740
BssT1I	CCWWGG	1 cut(s)	751
Bst4CI	ACNGT	5 cut(s)	149, 212, 281, 542, 697
Bst6I	CTCTTC	1 cut(s)	492
BstAFI	CTTAAG	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	77, 240
BstDEI	CTNAG	2 cut(s)	198, 528
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	122, 387, 469
BstHHI	GCGC	2 cut(s)	81, 94
BstKTI	GATC	3 cut(s)	208, 454, 743
BstMBI	GATC	3 cut(s)	205, 451, 740
BstMCI	CGRYCG	2 cut(s)	231, 743
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 100, 172, 221, 227, 230, 239, 717, 880
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	233, 536
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	122, 387, 469
BtsIMutI	CAGTG	4 cut(s)	286, 304, 492, 693
Cac8I	GCNNGC	2 cut(s)	77, 240
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	2 cut(s)	81, 94
Csp6I	GTAC	3 cut(s)	601, 637, 748
CviAII	CATG	3 cut(s)	333, 479, 551
CviQI	GTAC	3 cut(s)	601, 637, 748
DdeI	CTNAG	2 cut(s)	198, 528
DpnI	GATC	3 cut(s)	207, 453, 742
DpnII	GATC	3 cut(s)	205, 451, 740
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	751
Eco52I	CGGCCG	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	3 cut(s)	336, 482, 554
FatI	CATG	3 cut(s)	332, 478, 550
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	222, 231, 525
FokI	GGATG	3 cut(s)	109, 374, 476
Fsp4HI	GCNGC	3 cut(s)	222, 231, 525
FspBI	CTAG	3 cut(s)	68, 107, 570
GlaI	GCGC	2 cut(s)	80, 93
GluI	GCNGC	3 cut(s)	222, 231, 525
HaeIII	GGCC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	81, 94
Hin1II	CATG	3 cut(s)	336, 482, 554
Hin6I	GCGC	2 cut(s)	79, 92
HinP1I	GCGC	2 cut(s)	79, 92
HinfI	GANTC	4 cut(s)	266, 287, 470, 518
HphI	GGTGA	2 cut(s)	200, 494
Hpy166II	GTNNAC	4 cut(s)	117, 492, 637, 647
Hpy188I	TCNGA	6 cut(s)	259, 271, 292, 307, 456, 676
Hpy188III	TCNNGA	2 cut(s)	132, 802
Hpy8I	GTNNAC	4 cut(s)	117, 492, 637, 647
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	5 cut(s)	149, 212, 281, 542, 697
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	342, 446, 587
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 100, 172, 221, 227, 230, 239, 717, 880
HpyF3I	CTNAG	2 cut(s)	198, 528
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	336, 482, 554
HspAI	GCGC	2 cut(s)	79, 92
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	205, 451, 740
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	767, 879
LpnPI	CCDG	3 cut(s)	80, 174, 675
Lsp1109I	GCAGC	2 cut(s)	233, 536
LweI	GCATC	4 cut(s)	79, 90, 522, 614
MaeI	CTAG	3 cut(s)	68, 107, 570
MaeII	ACGT	1 cut(s)	13
MalI	GATC	3 cut(s)	207, 453, 742
MboI	GATC	3 cut(s)	205, 451, 740
MboII	GAAGA	5 cut(s)	296, 465, 509, 633, 734
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	343, 359
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	8 cut(s)	17, 156, 187, 244, 256, 344, 693, 747
MseI	TTAA	2 cut(s)	402, 822
MspA1I	CMGCKG	2 cut(s)	188, 527
MspCI	CTTAAG	1 cut(s)	821
MwoI	GCNNNNNNNGC	9 cut(s)	24, 100, 172, 221, 227, 230, 239, 717, 880
NdeII	GATC	3 cut(s)	205, 451, 740
NlaIII	CATG	3 cut(s)	336, 482, 554
NlaIV	GGNNCC	1 cut(s)	781
PciSI	GCTCTTC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	266, 287, 518
PkrI	GCNGC	3 cut(s)	223, 232, 526
Ple19I	CGATCG	1 cut(s)	743
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	602, 638, 749
RsaNI	GTAC	3 cut(s)	601, 637, 748
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	402, 822
SatI	GCNGC	3 cut(s)	222, 231, 525
Sau3AI	GATC	3 cut(s)	205, 451, 740
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	16, 108, 139, 204, 529, 655, 798, 822, 876
SfaNI	GCATC	4 cut(s)	79, 90, 522, 614
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	2 cut(s)	343, 359
SsiI	CCGC	8 cut(s)	18, 27, 33, 73, 186, 215, 231, 791
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	3 cut(s)	68, 107, 570
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	5 cut(s)	149, 212, 281, 542, 697
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	5 cut(s)	41, 131, 556, 739, 743
TasI	AATT	2 cut(s)	343, 359
TatI	WGTACW	2 cut(s)	600, 636
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	266, 287, 518
Tru1I	TTAA	2 cut(s)	402, 822
Tru9I	TTAA	2 cut(s)	402, 822
TscAI	CASTG	4 cut(s)	286, 304, 499, 700
TseI	GCWGC	2 cut(s)	221, 524
TspDTI	ATGAA	4 cut(s)	321, 372, 396, 539
TspRI	CASTG	4 cut(s)	286, 304, 499, 700
Vha464I	CTTAAG	1 cut(s)	821
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	3 cut(s)	68, 107, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.