Rmu_sc0005065.1_g000027

Plays a complex role in regulating the basal catalytic activity of the alpha subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0001417
Physical Location & Seq
Forward (+)
106065 .. 109728
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000027.1.cds

Sequence Viewer

Length: 1056 bp
atgagactctacagtggcttgctgataagattccatgaacaactgaacaagtatgtccagtggcagattggagatggaattggactctgtttctctggtttagacgcttcgtccctccgttgtattcatgttcttctatcgataatgcagcttctgatcgccaaattcgccatcccaaaacgcatagcagcatatgagcaagtgttctgcttcccaaaacgcatagcagcatatgctgtccttaccgcacgtgacaaaaaacacactcccttaattggtgagtggaccccacatcggaggggggaatcggagaagaagaagaagaagaagaaggaagagatgtatagagagcgagggtcgggtgggtcgaagatgacggaggtgggggcggttgatcggaagcggatcaacgacgccttggacaagcagctggagcgatcgtcgccgtcgacttctagggctgcaatcaacggcaaggatggcagcagtaataagcctcttatcatgggggaggaatctgaaacagatagtgaagagtcagatgttagtggttcagatggggatgacacatcttggatatcatggttttgcaatttgagaggaaatgagtttttttgtgaagttgatgatgattatatacaagatgatttcaacctttgtgggctaagcagccaagttccgtattatgattatgcacttgatttgatcttggatgttgagtcttcacatggtgatatgtttacggaagaacaaaatgaattaattgaatcagcagcggagatgctctatggtctgattcatgtacgatatattttgaccagcaagggcatggctgccatgctagacaaatacaaaaactatgatttcgggagatgtccaagagtgtactgctgtggacaaccctgcctcccagttggccaatcagacatcccacggtcaagcactgtaaaaatatactgccccaagtgtgaagatatctactaccctcgatcgaagtatcaaggtagtatcctttgtatttataattctgcatttgaaactgctggctgcgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169
Pfam Domains
Protein Families
CK_II_beta

Protein Analysis

351

Amino Acids

39.7

Weight (kDa)

5.67

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AccI GTMKAC 1 cut(s) 449
AciI CCGC 4 cut(s) 246, 389, 403, 776
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 2 cut(s) 804, 887
AfiI CCNNNNNNNGG 2 cut(s) 275, 294
AgsI TTSAA 3 cut(s) 652, 767, 1037
AhdI GACNNNNNGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 151, 430
AluI AGCT 2 cut(s) 151, 430
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 1 cut(s) 916
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 290, 743
AvaII GGWCC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 918
BbrPI CACGTG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 714
BccI CCATC 4 cut(s) 68, 179, 473, 551
BceAI ACGGC 2 cut(s) 430, 487
BciVI GTATCC 1 cut(s) 1019
BfaI CTAG 2 cut(s) 456, 842
BfmI CTRYAG 1 cut(s) 10
BfuI GTATCC 1 cut(s) 1019
BlpI GCTNAGC 1 cut(s) 665
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 1 cut(s) 771
BmuI ACTGGG 1 cut(s) 905
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 665
Bsa29I ATCGAT 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 417, 932
BsaXI ACNNNNNCTCC 4 cut(s) 425, 455, 891, 921
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 294
Bse1I ACTGG 2 cut(s) 58, 911
BseCI ATCGAT 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 417, 932
BseGI GGATG 5 cut(s) 171, 484, 568, 718, 927
BseLI CCNNNNNNNGG 2 cut(s) 275, 294
BseNI ACTGG 2 cut(s) 58, 911
Bsh1285I CGRYCG 2 cut(s) 440, 992
BshFI GGCC 1 cut(s) 918
BshVI ATCGAT 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 440, 992
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 275, 294
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 918
Bsp143I GATC 6 cut(s) 156, 394, 405, 437, 705, 989
Bsp1720I GCTNAGC 1 cut(s) 665
BspACI CCGC 4 cut(s) 246, 389, 403, 776
BspANI GGCC 1 cut(s) 918
BspDI ATCGAT 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 413
BsrI ACTGG 2 cut(s) 58, 911
BssECI CCNNGG 2 cut(s) 417, 932
BssMI GATC 6 cut(s) 156, 394, 405, 437, 705, 989
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 14, 936, 946
Bst6I CTCTTC 2 cut(s) 330, 528
BstACI GRCGYC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 20, 1045
BstDEI CTNAG 1 cut(s) 665
BstDSI CCRYGG 1 cut(s) 932
BstF5I GGATG 5 cut(s) 171, 484, 568, 718, 927
BstKTI GATC 6 cut(s) 159, 397, 408, 440, 708, 992
BstMBI GATC 6 cut(s) 156, 394, 405, 437, 705, 989
BstMCI CGRYCG 2 cut(s) 440, 992
BstMWI GCNNNNNNNGC 5 cut(s) 167, 233, 433, 442, 480
BstSFI CTRYAG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 714
Bsu15I ATCGAT 1 cut(s) 140
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 1 cut(s) 918
BsuTUI ATCGAT 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 5 cut(s) 171, 484, 568, 718, 927
BtsIMutI CAGTG 3 cut(s) 19, 65, 942
Cac8I GCNNGC 2 cut(s) 20, 1045
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 140
CseI GACGC 2 cut(s) 113, 422
Csp6I GTAC 2 cut(s) 803, 886
CspCI CAANNNNNGTGG 2 cut(s) 640, 675
CviAII CATG 8 cut(s) 35, 128, 505, 582, 728, 800, 829, 838
CviQI GTAC 2 cut(s) 803, 886
DdeI CTNAG 1 cut(s) 665
DpnI GATC 6 cut(s) 158, 396, 407, 439, 707, 991
DpnII GATC 6 cut(s) 156, 394, 405, 437, 705, 989
DraIII CACNNNGTG 1 cut(s) 731
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 916
Eam1104I CTCTTC 2 cut(s) 330, 528
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 2 cut(s) 330, 528
Eco130I CCWWGG 1 cut(s) 417
Eco32I GATATC 2 cut(s) 579, 976
Eco47I GGWCC 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 251
EcoRV GATATC 2 cut(s) 579, 976
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 8 cut(s) 38, 131, 508, 585, 731, 803, 832, 841
FaqI GGGAC 1 cut(s) 97
FatI CATG 8 cut(s) 34, 127, 504, 581, 727, 799, 828, 837
FauNDI CATATG 2 cut(s) 193, 232
FblI GTMKAC 1 cut(s) 449
FokI GGATG 5 cut(s) 158, 491, 575, 725, 914
FspBI CTAG 2 cut(s) 456, 842
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 918
HgaI GACGC 2 cut(s) 113, 422
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 8 cut(s) 38, 131, 508, 585, 731, 803, 832, 841
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 9 cut(s) 6, 30, 84, 305, 515, 536, 719, 767, 796
HphI GGTGA 2 cut(s) 290, 743
Hpy166II GTNNAC 5 cut(s) 285, 450, 741, 886, 896
Hpy188I TCNGA 9 cut(s) 156, 297, 310, 399, 520, 541, 556, 795, 925
Hpy188III TCNNGA 1 cut(s) 868
Hpy8I GTNNAC 5 cut(s) 285, 450, 741, 886, 896
Hpy99I CGWCG 3 cut(s) 416, 445, 451
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 3 cut(s) 14, 936, 946
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 148, 464, 591, 695, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 233, 433, 442, 480
HpyF3I CTNAG 1 cut(s) 665
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 8 cut(s) 38, 131, 508, 585, 731, 803, 832, 841
Kzo9I GATC 6 cut(s) 156, 394, 405, 437, 705, 989
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 7 cut(s) 71, 81, 416, 832, 916, 924, 1029
LweI GCATC 1 cut(s) 771
MaeI CTAG 2 cut(s) 456, 842
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 251
MalI GATC 6 cut(s) 158, 396, 407, 439, 707, 991
MboI GATC 6 cut(s) 156, 394, 405, 437, 705, 989
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 7 cut(s) 78, 164, 273, 592, 758, 762, 1024
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 3 cut(s) 78, 545, 728
MnlI CCTC 9 cut(s) 125, 291, 347, 373, 505, 507, 593, 917, 996
Mox20I TGGCCA 1 cut(s) 918
MscI TGGCCA 1 cut(s) 918
MseI TTAA 2 cut(s) 272, 761
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 430, 776
MwoI GCNNNNNNNGC 5 cut(s) 167, 233, 433, 442, 480
NdeI CATATG 2 cut(s) 193, 232
NdeII GATC 6 cut(s) 156, 394, 405, 437, 705, 989
NlaIII CATG 8 cut(s) 38, 131, 508, 585, 731, 803, 832, 841
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 365, 446
PfeI GAWTC 5 cut(s) 30, 305, 515, 767, 796
Ple19I CGATCG 2 cut(s) 440, 992
PleI GAGTC 3 cut(s) 78, 544, 727
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 3 cut(s) 78, 544, 727
Ppu21I YACGTR 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 761
PsiI TTATAA 1 cut(s) 1023
PspCI CACGTG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 154
PvuI CGATCG 2 cut(s) 440, 992
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 804, 887
RsaNI GTAC 2 cut(s) 803, 886
SalI GTCGAC 1 cut(s) 448
SaqAI TTAA 2 cut(s) 272, 761
Sau3AI GATC 6 cut(s) 156, 394, 405, 437, 705, 989
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 3 cut(s) 78, 545, 728
SetI ASST 6 cut(s) 153, 253, 384, 432, 657, 1006
SfaNI GCATC 1 cut(s) 771
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 285
Sse9I AATT 7 cut(s) 78, 164, 273, 592, 758, 762, 1024
SsiI CCGC 4 cut(s) 246, 389, 403, 776
SspMI CTAG 2 cut(s) 456, 842
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 14, 936, 946
TaiI ACGT 1 cut(s) 253
TaqI TCGA 5 cut(s) 140, 368, 449, 988, 992
TasI AATT 7 cut(s) 78, 164, 273, 592, 758, 762, 1024
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 5 cut(s) 30, 305, 515, 767, 796
Tru1I TTAA 2 cut(s) 272, 761
Tru9I TTAA 2 cut(s) 272, 761
TscAI CASTG 3 cut(s) 19, 65, 949
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 4 cut(s) 51, 116, 771, 788
TspGWI ACGGA 4 cut(s) 107, 392, 669, 758
TspRI CASTG 3 cut(s) 19, 65, 949
VpaK11BI GGWCC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 826
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 2 cut(s) 456, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.