Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005065.1

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Forward (+)

176093 .. 177392

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005065.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgcatggttttggagtgtatcagtttggaaatggacatcgttacgaaggagcctggcatgaaggaagaaagcagggacttggtatgtacactttcagaaatggtgaaacacaatctggtcactggcaaaatggggttattgatcccagcatgcagaatacccatcctggatcctcctatgctgtcaaccatgccaaagttctgaatgcagtccaggaagcacggagagctgctgagagagcatatgaagtggcaaaggtggatgaaagagtgaagagaactatagcgacagctaataaagcagcaaatgctgcaagagttgcggccgtaaaggctgtgcaaaaacaaatacaccagcataacaatgatggcacctctccctcacgactcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

131

Amino Acids

14.45

Weight (kDa)

9.99

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	3 cut(s)	137, 165, 178
AcoI	YGGCCR	1 cut(s)	324
AfaI	GTAC	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	53, 166, 213
AluBI	AGCT	2 cut(s)	230, 293
AluI	AGCT	2 cut(s)	230, 293
AlwI	GGATC	3 cut(s)	137, 165, 178
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	3 cut(s)	230, 302, 311
AsuHPI	GGTGA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	217, 298, 314
BccI	CCATC	2 cut(s)	171, 362
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	3 cut(s)	55, 168, 215
BfaI	CTAG	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	231, 303, 312, 324
BlsI	GCNGC	4 cut(s)	232, 304, 313, 325
Bme1390I	CCNGG	3 cut(s)	55, 168, 215
BmiI	GGNNCC	3 cut(s)	52, 172, 373
BmrFI	CCNGG	3 cut(s)	55, 168, 215
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	3 cut(s)	55, 168, 215
BseGI	GGATG	2 cut(s)	163, 268
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	128
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	217, 298, 314
BseYI	CCCAGC	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	142, 170
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	52, 172, 373
BspPI	GGATC	3 cut(s)	137, 165, 178
BspT107I	GGYRCC	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	142, 170
Bst2UI	CCWGG	3 cut(s)	55, 168, 215
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	3 cut(s)	308, 311, 320
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	163, 268
BstKTI	GATC	2 cut(s)	145, 173
BstMBI	GATC	2 cut(s)	142, 170
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	7 cut(s)	227, 239, 299, 308, 311, 320, 332
BstNI	CCWGG	3 cut(s)	55, 168, 215
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	53, 166, 213
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	217, 298, 314
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	163, 268
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	5, 59, 151, 191
CviJI	RGCY	5 cut(s)	53, 230, 293, 326, 335
CviKI_1	RGCY	5 cut(s)	53, 230, 293, 326, 335
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	144, 172
DpnII	GATC	2 cut(s)	142, 170
EaeI	YGGCCR	1 cut(s)	324
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	324
Eco52I	CGGCCG	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	53, 166, 213
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 62, 154, 194
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	4 cut(s)	4, 58, 150, 190
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	231, 303, 312, 324
FokI	GGATG	2 cut(s)	150, 275
Fsp4HI	GCNGC	4 cut(s)	231, 303, 312, 324
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	4 cut(s)	231, 303, 312, 324
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	8, 62, 154, 194
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	387
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	90, 187
Hpy188I	TCNGA	2 cut(s)	98, 204
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	90, 187
HpyAV	CCTTC	2 cut(s)	41, 56
HpyCH4V	TGCA	5 cut(s)	4, 154, 209, 314, 340
HpyF10VI	GCNNNNNNNGC	7 cut(s)	227, 239, 299, 308, 311, 320, 332
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	8, 62, 154, 194
Kzo9I	GATC	2 cut(s)	142, 170
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	217, 298, 314
MaeI	CTAG	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	41, 119
MalI	GATC	2 cut(s)	144, 172
MboI	GATC	2 cut(s)	142, 170
MboII	GAAGA	2 cut(s)	78, 286
MflI	RGATCY	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	3 cut(s)	184, 385, 391
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	363
MspR9I	CCNGG	3 cut(s)	55, 168, 215
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	3 cut(s)	55, 168, 215
MwoI	GCNNNNNNNGC	7 cut(s)	227, 239, 299, 308, 311, 320, 332
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	142, 170
NlaIII	CATG	4 cut(s)	8, 62, 154, 194
NlaIV	GGNNCC	3 cut(s)	52, 172, 373
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	154
PaeI	GCATGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	211
PfoI	TCCNGGA	2 cut(s)	166, 213
PkrI	GCNGC	4 cut(s)	232, 304, 313, 325
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	53, 166, 213
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	3 cut(s)	53, 166, 213
PspN4I	GGNNCC	3 cut(s)	52, 172, 373
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	4 cut(s)	231, 303, 312, 324
Sau3AI	GATC	2 cut(s)	142, 170
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	55, 168, 215
SetI	ASST	4 cut(s)	232, 261, 295, 377
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	154
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	53, 166, 213
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	230, 302, 311
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	75, 261, 279
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	128
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.