Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Reverse (-)

39329355 .. 39334130

Gene Structure 4776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG178200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCATCAGAAGAAATCAGAAGCTCAGATCGGAAAAGAAAGCACCGGCCTCTCTTCCGATTTCAACCCCACCATAATCTCCGCCCCACCACCTTCATCTCTCGCTTCAATCTCCCACCAATTCTCCCATTTCGCTCACTACCCATCTCTAAATGACGCCCCGATTCCTCAGACCATACCCTACAAGCGTCCCCTTCTGACCCAAACTCACTCCTCTCTAGTCAAATCCCCCACCCTTTACAAACTCCAACCCGCCCCTCAAAACCCACCTCTCTTTTCTCCTTCCCTCGCCGCCAAGTCCGCCTTCTTCCGCCTCCTCCGCCGCGTCAACCGTCTCCGCCGCCTCTTCTTGCTCCTCTCCCTCCCCTTCTTCTACTTCCTCGTCTCTCACCCGAGTCATTCCTTCATTCTTGACTTCCTCTCAGCTTTCGCTTTCTCATCCGCATTGCTCTTCTCCCTCAATCTAGCCCTCCCTCGGCTTCCGTCTATTCGGCTTTTTCTGGCCAGGTCGTTCCCGATCAAGCTCAAGTCGTCGGCTTCATTGTCCAGGCCGCCGCTGCCGGTGTTCTGGTCAATCGGGTCGCGGCAGAAGCCGGAGAAGAGAGGGATTTCGGGGTGTTGGGTGCAGGTATACAGCAACGGGGACGTGTATGAGGGTGAGTTTCATAAGGGGAAGTGTTCCGGGAGCGGGGTTTATTACTATTATATGAGTGGGAGGTATGAGGGGGATTGGGTGGATGAGAAGTATGATGGATATGGTGTAGAGACTTGGGCTAGAGGGAGCCGTTATCGCGGCCAGTATAGGCAGGGGCTTAGGCATGGTTTCGGGGTGTATAGGTTTTACACCGGGGATGTTTATGCCGGGGAATGGTCGAATGGGCAGAGTCATGGGTGTGGAGTTCATACATGTGAGGATGGGAGTAGATATGTAGGGGAATTCAAGTGGGGTGTCAAGCATGGCCTTGGCCACTACCATTTCAGAAATGGAGACACTTACGCTGGAGAGTATTTTGCGGACAAAATGCATGGGTTCGGGGTCTATCAATTTGCAAATGGGCATCGTTATGAGGGAGCCTGGCATGAGGGTAGAAGGCAAGGCCTCGGTATGTACACGTTTAGAAATGGGGAGACTCAAGCTGGTCACTGGCAAAATGGAATTCTTGATGTTCCAAGCACACAGAATGCAAGTTTTCCTGTATCTCCTGTTGCTGTTAATCATTCCAAAGTCCTTAATGCAGTTCAGGTACTTAATATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

419

Amino Acids

47.16

Weight (kDa)

9.62

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORN	PF02493	263 - 285	5.7e-06	MORN repeat
MORN	PF02493	286 - 308	4.4e-06	MORN repeat
MORN	PF02493	332 - 354	1.8e-06	MORN repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	3 cut(s)	324, 583, 792
AcoI	YGGCCR	3 cut(s)	501, 793, 964
AcsI	RAATTY	2 cut(s)	935, 1155
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	1109, 1245
AfiI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
AflIII	ACRYGT	3 cut(s)	645, 905, 1110
AgsI	TTSAA	3 cut(s)	64, 108, 940
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	3 cut(s)	503, 545, 1073
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	4 cut(s)	23, 425, 523, 1136
AluI	AGCT	4 cut(s)	23, 425, 523, 1136
Alw26I	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	7 cut(s)	46, 501, 548, 793, 958, 964, 1096
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	2 cut(s)	935, 1155
AsuC2I	CCSGG	3 cut(s)	682, 847, 862
AsuHPI	GGTGA	2 cut(s)	380, 668
AvaI	CYCGRG	1 cut(s)	391
BalI	TGGCCA	2 cut(s)	503, 966
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	3 cut(s)	151, 743, 908
BceAI	ACGGC	1 cut(s)	768
BciT130I	CCWGG	3 cut(s)	505, 547, 1075
BcnI	CCSGG	3 cut(s)	682, 847, 862
BcoDI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BfaI	CTAG	3 cut(s)	218, 464, 774
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	8 cut(s)	291, 322, 340, 551, 554, 557, 584, 793
BlsI	GCNGC	8 cut(s)	292, 323, 341, 552, 555, 558, 585, 794
Bme1390I	CCNGG	6 cut(s)	505, 547, 682, 847, 862, 1075
BmeT110I	CYCGRG	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	782, 1072
BmrFI	CCNGG	6 cut(s)	505, 547, 682, 847, 862, 1075
BmsI	GCATC	2 cut(s)	13, 1066
BpmI	CTGGAG	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	509, 1116
BpuMI	CCSGG	3 cut(s)	682, 847, 862
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	473, 846, 861, 961, 1099
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 687, 867
Bse118I	RCCGGY	2 cut(s)	44, 559
Bse1I	ACTGG	2 cut(s)	796, 1148
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	505, 547, 1075
BseDI	CCNNGG	5 cut(s)	473, 846, 861, 961, 1099
BseGI	GGATG	4 cut(s)	437, 742, 856, 919
BseLI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	3 cut(s)	38, 182, 435
BseNI	ACTGG	2 cut(s)	796, 1148
BseRI	GAGGAG	3 cut(s)	202, 305, 344
BseXI	GCAGC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	3 cut(s)	324, 583, 792
BshFI	GGCC	7 cut(s)	48, 503, 550, 795, 960, 966, 1098
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	6 cut(s)	45, 560, 593, 681, 846, 861
BslFI	GGGAC	2 cut(s)	174, 656
BslI	CCNNNNNNNGG	3 cut(s)	474, 687, 867
BsmAI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BsmBI	CGTCTC	2 cut(s)	338, 388
BsmFI	GGGAC	2 cut(s)	174, 656
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	7 cut(s)	48, 503, 550, 795, 960, 966, 1098
BsoBI	CYCGRG	1 cut(s)	391
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	27, 516
BspANI	GGCC	7 cut(s)	48, 503, 550, 795, 960, 966, 1098
BspCNI	CTCAG	3 cut(s)	37, 181, 434
BspFNI	CGCG	3 cut(s)	324, 583, 792
BspLI	GGNNCC	2 cut(s)	782, 1072
BspMI	ACCTGC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	44, 559
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	796, 1148
BssAI	RCCGGY	2 cut(s)	44, 559
BssECI	CCNNGG	5 cut(s)	473, 846, 861, 961, 1099
BssMI	GATC	2 cut(s)	27, 516
BssNAI	GTATAC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	961
Bst1107I	GTATAC	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	505, 547, 1075
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	4 cut(s)	58, 350, 455, 593
BstACI	GRCGYC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	1107
BstDEI	CTNAG	4 cut(s)	24, 168, 421, 812
BstF5I	GGATG	4 cut(s)	437, 742, 856, 919
BstFNI	CGCG	3 cut(s)	324, 583, 792
BstKTI	GATC	2 cut(s)	30, 519
BstMAI	GTCTC	5 cut(s)	338, 388, 758, 981, 1121
BstMBI	GATC	2 cut(s)	27, 516
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 318, 556, 589, 789
BstNI	CCWGG	3 cut(s)	505, 547, 1075
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	6 cut(s)	503, 545, 680, 845, 860, 1073
BstUI	CGCG	3 cut(s)	324, 583, 792
BstV1I	GCAGC	1 cut(s)	543
BstZ17I	GTATAC	1 cut(s)	631
BsuRI	GGCC	7 cut(s)	48, 503, 550, 795, 960, 966, 1098
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	437, 742, 856, 919
BtsIMutI	CAGTG	1 cut(s)	1141
BveI	ACCTGC	1 cut(s)	616
Cfr10I	RCCGGY	2 cut(s)	44, 559
CseI	GACGC	3 cut(s)	164, 176, 313
Csp6I	GTAC	2 cut(s)	1108, 1244
CviAII	CATG	6 cut(s)	818, 887, 906, 956, 1025, 1079
CviQI	GTAC	2 cut(s)	1108, 1244
DdeI	CTNAG	4 cut(s)	24, 168, 421, 812
DpnI	GATC	2 cut(s)	29, 518
DpnII	GATC	2 cut(s)	27, 516
EaeI	YGGCCR	3 cut(s)	501, 793, 964
Eam1104I	CTCTTC	4 cut(s)	58, 350, 455, 593
EarI	CTCTTC	4 cut(s)	58, 350, 455, 593
EciI	GGCGGA	5 cut(s)	70, 289, 299, 308, 326
Eco130I	CCWWGG	1 cut(s)	961
Eco147I	AGGCCT	1 cut(s)	1098
Eco88I	CYCGRG	1 cut(s)	391
EcoRI	GAATTC	2 cut(s)	935, 1155
EcoRII	CCWGG	3 cut(s)	503, 545, 1073
EcoT14I	CCWWGG	1 cut(s)	961
EcoT22I	ATGCAT	2 cut(s)	6, 1026
ErhI	CCWWGG	1 cut(s)	961
Esp3I	CGTCTC	2 cut(s)	338, 388
FaeI	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	174, 656
FatI	CATG	6 cut(s)	817, 886, 905, 955, 1024, 1078
FauI	CCCGC	2 cut(s)	259, 680
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	8 cut(s)	291, 322, 340, 551, 554, 557, 584, 793
FokI	GGATG	4 cut(s)	424, 749, 863, 926
Fsp4HI	GCNGC	8 cut(s)	291, 322, 340, 551, 554, 557, 584, 793
FspBI	CTAG	3 cut(s)	218, 464, 774
GluI	GCNGC	8 cut(s)	291, 322, 340, 551, 554, 557, 584, 793
GsuI	CTGGAG	1 cut(s)	1020
HaeIII	GGCC	7 cut(s)	48, 503, 550, 795, 960, 966, 1098
HapII	CCGG	6 cut(s)	45, 560, 593, 681, 846, 861
HgaI	GACGC	3 cut(s)	164, 176, 313
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	4 cut(s)	163, 394, 883, 1129
HpaII	CCGG	6 cut(s)	45, 560, 593, 681, 846, 861
HphI	GGTGA	2 cut(s)	380, 668
Hpy166II	GTNNAC	3 cut(s)	328, 631, 1110
Hpy188I	TCNGA	8 cut(s)	9, 19, 27, 32, 58, 171, 198, 980
Hpy188III	TCNNGA	3 cut(s)	410, 514, 1160
Hpy8I	GTNNAC	3 cut(s)	328, 631, 1110
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	7 cut(s)	102, 203, 291, 313, 376, 412, 1083
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	645, 1112
HpyCH4V	TGCA	6 cut(s)	4, 625, 1024, 1049, 1184, 1235
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 318, 556, 589, 789
HpyF3I	CTNAG	4 cut(s)	24, 168, 421, 812
HpySE526I	ACGT	2 cut(s)	645, 1112
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
Kzo9I	GATC	2 cut(s)	27, 516
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	4 cut(s)	357, 684, 780, 1070
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	2 cut(s)	13, 1066
MaeI	CTAG	3 cut(s)	218, 464, 774
MaeII	ACGT	2 cut(s)	645, 1112
MaeIII	GTNAC	1 cut(s)	1139
MalI	GATC	2 cut(s)	29, 518
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	2 cut(s)	27, 516
MboII	GAAGA	7 cut(s)	22, 45, 298, 337, 361, 442, 610
MlsI	TGGCCA	2 cut(s)	503, 966
MluCI	AATT	4 cut(s)	119, 935, 1043, 1155
MluNI	TGGCCA	2 cut(s)	503, 966
MlyI	GAGTC	3 cut(s)	403, 892, 1123
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	2 cut(s)	503, 966
Mph1103I	ATGCAT	2 cut(s)	6, 1026
MscI	TGGCCA	2 cut(s)	503, 966
MseI	TTAA	3 cut(s)	1212, 1230, 1248
MslI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
Msp20I	TGGCCA	2 cut(s)	503, 966
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	6 cut(s)	45, 560, 593, 681, 846, 861
MspR9I	CCNGG	6 cut(s)	505, 547, 682, 847, 862, 1075
Mva1269I	GAATGC	1 cut(s)	1186
MvaI	CCWGG	3 cut(s)	505, 547, 1075
MvnI	CGCG	3 cut(s)	324, 583, 792
MwoI	GCNNNNNNNGC	5 cut(s)	299, 318, 556, 589, 789
NciI	CCSGG	3 cut(s)	682, 847, 862
NdeII	GATC	2 cut(s)	27, 516
NlaIII	CATG	6 cut(s)	821, 890, 909, 959, 1028, 1082
NlaIV	GGNNCC	2 cut(s)	782, 1072
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	1139
NsiI	ATGCAT	2 cut(s)	6, 1026
NspI	RCATGY	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	1098
PciI	ACATGT	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	1186
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	680
PkrI	GCNGC	8 cut(s)	292, 323, 341, 552, 555, 558, 585, 794
PleI	GAGTC	3 cut(s)	402, 891, 1123
PpsI	GAGTC	3 cut(s)	402, 891, 1123
PscI	ACATGT	1 cut(s)	905
Psp6I	CCWGG	3 cut(s)	503, 545, 1073
PspGI	CCWGG	3 cut(s)	503, 545, 1073
PspN4I	GGNNCC	2 cut(s)	782, 1072
RsaI	GTAC	2 cut(s)	1109, 1245
RsaNI	GTAC	2 cut(s)	1108, 1244
RseI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	1212, 1230, 1248
SatI	GCNGC	8 cut(s)	291, 322, 340, 551, 554, 557, 584, 793
Sau3AI	GATC	2 cut(s)	27, 516
SchI	GAGTC	3 cut(s)	403, 892, 1123
ScrFI	CCNGG	6 cut(s)	505, 547, 682, 847, 862, 1075
SfaNI	GCATC	2 cut(s)	13, 1066
SmiMI	CAYNNNNRTG	3 cut(s)	891, 906, 1062
SmlI	CTYRAG	2 cut(s)	524, 1131
SmoI	CTYRAG	2 cut(s)	524, 1131
Sse9I	AATT	4 cut(s)	119, 935, 1043, 1155
SseBI	AGGCCT	1 cut(s)	1098
SspI	AATATT	1 cut(s)	1252
SspMI	CTAG	3 cut(s)	218, 464, 774
StuI	AGGCCT	1 cut(s)	1098
StyD4I	CCNGG	6 cut(s)	503, 545, 680, 845, 860, 1073
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	2 cut(s)	648, 1115
TaqI	TCGA	1 cut(s)	872
TasI	AATT	4 cut(s)	119, 935, 1043, 1155
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	7 cut(s)	293, 324, 342, 553, 556, 586, 795
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	1212, 1230, 1248
Tru9I	TTAA	3 cut(s)	1212, 1230, 1248
TscAI	CASTG	1 cut(s)	1148
TseFI	GTSAC	1 cut(s)	1139
TseI	GCWGC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	1139
TspDTI	ATGAA	5 cut(s)	84, 394, 528, 653, 890
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	1148
XapI	RAATTY	2 cut(s)	935, 1155
XceI	RCATGY	1 cut(s)	909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	3 cut(s)	218, 464, 774
Zsp2I	ATGCAT	2 cut(s)	6, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.