Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002779

Physical Location & Seq

Genomic Coordinates Reverse (-)

6424878 .. 6428549

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAACCATACACCTTCCACTTTATCCCACTCTCCCACACTCTCCTCTCTCCACCACCACCCGATTCACTTCCACCCCCATGGCCACACTGCTTTCAATTCCGGCCCTTCTTCTTCCTCTTCTTCTTCGTTTTTGTATTCTGCTTCACTTGCAATCATTCCCTTCGCCACACGATCACTGGTTCTGAAGCTTTTCCGCCATTTCCGCCATTTCCGCGGTGCCCATCTGCTCAGAGTCCACTGCCGCTTGCTTATCCTCTTCTTTTTGCCTTCCCTTTACTTCATCACCAGTTCCCGCCGCTCTTTCGCTCTCGATTTCCTCTCTGTGATCGCTCTCTCGGCGGCCCTTTTGATTTCTCTCAACATTGCACTTCCCCGTTTTGTTTCGACTCGGTTGTTTCTTTCCCGCTCTTTGCCAATCAAGCTTTGTTCGTCTTCCTGCGTCTCTAAGCCCACTCAGCCTGTTCTTTGGTCAATTGGGTCGAAGCCAAAGTTGGACAAAAAGCCGAATTCGGGGTCTTGGGTGCAGGTGTATAGTAATAAGGATGTTTATGAGGGTGAATTTGATAAAGGAAAATGTTCAGGAAGTGGGGTTTATTACTATCATATGAGTGGGAGGTATGAAGGTGATTGGGTGGATGAGAAGTATGATGGTTATGGTGTGGAGACTTGGGCTAGAGGTAGCAGGTATCGCGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACTGGTGATGTTTATGCCGGAGAGTGGTATAATGGGCAGTGTCATGGGTGTGGCATACATACTTGCCAGGATGGAAGTCGGTATGTTGGGGAGTTTAAGTGGGGTGTCAAACATGGACTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGGGGAATATTTTGCGGACAAGATGCACGGTTTTGGAGTATATCAGTTTGGGAACGGCCATCGATATGAAGGAGCCTGGCATGAAGGTAGAAAGCAGGGATTTGGCATGTACACTTTCAGAAATGGGGAAACACAATCTGGTCACTGGCAAAATGGGGTGCTAGATATTCCCAGTGCACAAAATACCCAACCTGGATCTTCTTATTCTGCCAACCATGCCAAAGTGCTTAATGCAGTCCAGGAAGCACAGAGAGCTGCTGAGAGAGCATACGAAGCGGCCAAAGTAGAAGAAAGGGTGAACCGAGCTGTAACAATAGCTAATAAAGCAGCAATTGCTGCACGAGTTGCGGCTGTAAAGGCTGTGCAAAAACAAATACACCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

429

Amino Acids

47.94

Weight (kDa)

9.63

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35170 AT4G17080
fragaria_vesca	FvH4_5g20710 FvH4_5g20710 FvH4_7g09080 FvH4_7g09080
malus_domestica	MD02G1221500.v1.1 MD04G1054000.v1.1 MD06G1044700.v1.1 MD07G1094800.v1.1
prunus_persica	Prupe.2G119300_v2.0.a1 Prupe.5G052900_v2.0.a1
pyrus_communis	pycom02g18710 pycom04g04710 pycom06g03800 pycom07g07810
rosa_chinensis	RchiOBHm_Chr1g0344931 RchiOBHm_Chr7g0206481
rosa_laevigata	RLG00000003311 RLG00000028866
rosa_multiflora	Rmu_co8426337.1_g000001 Rmu_sc0000390.1_g000004 Rmu_sc0005065.1_g000042 Rmu_sc0010057.1_g000005
rosa_roxburghii	Rroxscaffold_3G00251490 Rroxscaffold_4G00309510
rosa_rugosa	Rorug01G0175100 Rorug07G0097700 Rorug07G0097800
rosa_samantha	Rh1AG193100 Rh1BG159400 Rh1CG178200 Rh1DG190200 Rh7AG229400 Rh7BG226000 Rh7CG244200 Rh7DG236400
rosa_wichuraiana	Rw1G015890 Rw7G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1285
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	517, 675
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	2 cut(s)	300, 408
AccII	CGCG	2 cut(s)	216, 693
AclWI	GGATC	1 cut(s)	1102
AcoI	YGGCCR	3 cut(s)	82, 955, 1176
AcsI	RAATTY	2 cut(s)	508, 560
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	1010
AfiI	CCNNNNNNNGG	2 cut(s)	512, 768
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	4 cut(s)	810, 974, 1090, 1137
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	5 cut(s)	190, 424, 1154, 1205, 1217
AluI	AGCT	5 cut(s)	190, 424, 1154, 1205, 1217
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	2 cut(s)	448, 659
Alw44I	GTGCAC	1 cut(s)	1074
AlwI	GGATC	1 cut(s)	1102
AoxI	GGCC	5 cut(s)	82, 103, 342, 955, 1176
ApaLI	GTGCAC	1 cut(s)	1074
ApeKI	GCWGC	3 cut(s)	1154, 1226, 1235
ApoI	RAATTY	2 cut(s)	508, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
Asp700I	GAANNNNTTC	2 cut(s)	191, 577
AspS9I	GGNCC	2 cut(s)	104, 343
AsuHPI	GGTGA	6 cut(s)	277, 569, 638, 761, 899, 1207
BaeGI	GKGCMC	2 cut(s)	223, 1078
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BauI	CACGAG	1 cut(s)	1239
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	1078
BbvI	GCAGC	3 cut(s)	1141, 1222, 1238
BccI	CCATC	4 cut(s)	231, 644, 809, 966
BceAI	ACGGC	1 cut(s)	970
BciT130I	CCWGG	4 cut(s)	812, 976, 1092, 1139
BcoDI	GTCTC	2 cut(s)	448, 659
BfaI	CTAG	2 cut(s)	675, 1061
BfuAI	ACCTGC	2 cut(s)	517, 675
BisI	GCNGC	8 cut(s)	244, 298, 342, 1155, 1176, 1227, 1236, 1248
BlsI	GCNGC	8 cut(s)	245, 299, 343, 1156, 1177, 1228, 1237, 1249
Bme1390I	CCNGG	4 cut(s)	812, 976, 1092, 1139
BmgT120I	GGNCC	2 cut(s)	104, 343
BmiI	GGNNCC	2 cut(s)	220, 973
BmrFI	CCNGG	4 cut(s)	812, 976, 1092, 1139
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	1 cut(s)	912
BmuI	ACTGGG	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	733
Bsa29I	ATCGAT	1 cut(s)	961
BsaJI	CCNNGG	2 cut(s)	79, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	827, 857
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 768
Bse1I	ACTGG	5 cut(s)	183, 288, 751, 1049, 1071
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	4 cut(s)	812, 976, 1092, 1139
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	2 cut(s)	79, 214
BseGI	GGATG	3 cut(s)	550, 643, 820
BseLI	CCNNNNNNNGG	2 cut(s)	512, 768
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	244, 470, 1149
BseNI	ACTGG	5 cut(s)	183, 288, 751, 1049, 1071
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	223, 1078
BseXI	GCAGC	3 cut(s)	1141, 1222, 1238
BseYI	CCCAGC	1 cut(s)	899
BsgI	GTGCAG	2 cut(s)	545, 1221
Bsh1236I	CGCG	2 cut(s)	216, 693
BshFI	GGCC	5 cut(s)	84, 105, 344, 957, 1178
BshNI	GGYRCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	961
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiSI	CCGG	2 cut(s)	102, 762
BslI	CCNNNNNNNGG	2 cut(s)	512, 768
BsmAI	GTCTC	2 cut(s)	448, 659
BsmBI	CGTCTC	1 cut(s)	448
BsnI	GGCC	5 cut(s)	84, 105, 344, 957, 1178
Bsp1286I	GDGCHC	2 cut(s)	223, 1078
Bsp1407I	TGTACA	1 cut(s)	1008
Bsp143I	GATC	3 cut(s)	173, 327, 1094
Bsp19I	CCATGG	1 cut(s)	79
BspANI	GGCC	5 cut(s)	84, 105, 344, 957, 1178
BspCNI	CTCAG	3 cut(s)	243, 469, 1150
BspDI	ATCGAT	1 cut(s)	961
BspFNI	CGCG	2 cut(s)	216, 693
BspLI	GGNNCC	2 cut(s)	220, 973
BspMI	ACCTGC	2 cut(s)	517, 675
BspPI	GGATC	1 cut(s)	1102
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	2 cut(s)	300, 408
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	1008
BsrI	ACTGG	5 cut(s)	183, 288, 751, 1049, 1071
BssECI	CCNNGG	2 cut(s)	79, 214
BssMI	GATC	3 cut(s)	173, 327, 1094
BssSI	CACGAG	1 cut(s)	1239
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	1239
Bst2UI	CCWGG	4 cut(s)	812, 976, 1092, 1139
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	2 cut(s)	124, 263
BstAPI	GCANNNNNTGC	3 cut(s)	1232, 1235, 1244
BstAUI	TGTACA	1 cut(s)	1008
BstC8I	GCNNGC	2 cut(s)	248, 695
BstDEI	CTNAG	4 cut(s)	230, 447, 456, 1158
BstDSI	CCRYGG	2 cut(s)	79, 214
BstF5I	GGATG	3 cut(s)	550, 643, 820
BstFNI	CGCG	2 cut(s)	216, 693
BstKTI	GATC	3 cut(s)	176, 330, 1097
BstMAI	GTCTC	2 cut(s)	448, 659
BstMBI	GATC	3 cut(s)	173, 327, 1094
BstNI	CCWGG	4 cut(s)	812, 976, 1092, 1139
BstNSI	RCATGY	1 cut(s)	1009
BstSCI	CCNGG	4 cut(s)	810, 974, 1090, 1137
BstSLI	GKGCMC	2 cut(s)	223, 1078
BstUI	CGCG	2 cut(s)	216, 693
BstV1I	GCAGC	3 cut(s)	1141, 1222, 1238
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	1094
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	1094
Bsu15I	ATCGAT	1 cut(s)	961
BsuRI	GGCC	5 cut(s)	84, 105, 344, 957, 1178
BsuTUI	ATCGAT	1 cut(s)	961
BtgI	CCRYGG	2 cut(s)	79, 214
BtsCI	GGATG	3 cut(s)	550, 643, 820
BtsI	GCAGTG	3 cut(s)	87, 238, 788
BtsIMutI	CAGTG	7 cut(s)	87, 176, 238, 744, 788, 1042, 1078
BveI	ACCTGC	2 cut(s)	517, 675
Cac8I	GCNNGC	2 cut(s)	248, 695
Cfr13I	GGNCC	2 cut(s)	104, 343
Cfr42I	CCGCGG	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	961
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	1009
CviAII	CATG	7 cut(s)	80, 719, 788, 857, 980, 1006, 1115
CviQI	GTAC	1 cut(s)	1009
DdeI	CTNAG	4 cut(s)	230, 447, 456, 1158
DpnI	GATC	3 cut(s)	175, 329, 1096
DpnII	GATC	3 cut(s)	173, 327, 1094
EaeI	YGGCCR	3 cut(s)	82, 955, 1176
Eam1104I	CTCTTC	2 cut(s)	124, 263
EarI	CTCTTC	2 cut(s)	124, 263
EciI	GGCGGA	2 cut(s)	185, 194
Eco130I	CCWWGG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	4 cut(s)	810, 974, 1090, 1137
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	7 cut(s)	83, 722, 791, 860, 983, 1009, 1118
FatI	CATG	7 cut(s)	79, 718, 787, 856, 979, 1005, 1114
FauI	CCCGC	3 cut(s)	302, 413, 686
FauNDI	CATATG	2 cut(s)	606, 895
Fnu4HI	GCNGC	8 cut(s)	244, 298, 342, 1155, 1176, 1227, 1236, 1248
FokI	GGATG	3 cut(s)	557, 650, 827
Fsp4HI	GCNGC	8 cut(s)	244, 298, 342, 1155, 1176, 1227, 1236, 1248
FspBI	CTAG	2 cut(s)	675, 1061
GluI	GCNGC	8 cut(s)	244, 298, 342, 1155, 1176, 1227, 1236, 1248
GsaI	CCCAGC	1 cut(s)	903
HaeIII	GGCC	5 cut(s)	84, 105, 344, 957, 1178
HapII	CCGG	2 cut(s)	102, 762
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	7 cut(s)	83, 722, 791, 860, 983, 1009, 1118
HindIII	AAGCTT	2 cut(s)	188, 422
HinfI	GANTC	3 cut(s)	64, 234, 388
HpaII	CCGG	2 cut(s)	102, 762
HphI	GGTGA	6 cut(s)	277, 569, 638, 761, 899, 1207
Hpy166II	GTNNAC	4 cut(s)	238, 1011, 1076, 1198
Hpy188I	TCNGA	4 cut(s)	186, 233, 881, 1019
Hpy188III	TCNNGA	2 cut(s)	311, 582
Hpy8I	GTNNAC	4 cut(s)	238, 1011, 1076, 1198
HpyAV	CCTTC	7 cut(s)	24, 117, 172, 279, 617, 962, 977
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4V	TGCA	8 cut(s)	152, 368, 526, 925, 1076, 1133, 1238, 1264
HpyF3I	CTNAG	4 cut(s)	230, 447, 456, 1158
Hsp92II	CATG	7 cut(s)	83, 722, 791, 860, 983, 1009, 1118
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	173, 327, 1094
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	3 cut(s)	1141, 1222, 1238
LweI	GCATC	1 cut(s)	912
MaeI	CTAG	2 cut(s)	675, 1061
MaeIII	GTNAC	2 cut(s)	1040, 1207
MalI	GATC	3 cut(s)	175, 329, 1096
MbiI	CCGCTC	2 cut(s)	300, 408
MboI	GATC	3 cut(s)	173, 327, 1094
MfeI	CAATTG	2 cut(s)	474, 1230
MflI	RGATCY	1 cut(s)	1094
MhlI	GDGCHC	2 cut(s)	223, 1078
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	6 cut(s)	97, 474, 508, 560, 723, 1230
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	243, 382
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	8 cut(s)	55, 127, 266, 329, 547, 609, 671, 708
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	2 cut(s)	191, 577
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	840, 1128
MslI	CAYNNNNRTG	4 cut(s)	78, 609, 792, 963
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	2 cut(s)	102, 762
MspR9I	CCNGG	4 cut(s)	812, 976, 1092, 1139
MunI	CAATTG	2 cut(s)	474, 1230
MvaI	CCWGG	4 cut(s)	812, 976, 1092, 1139
MvnI	CGCG	2 cut(s)	216, 693
NcoI	CCATGG	1 cut(s)	79
NdeI	CATATG	2 cut(s)	606, 895
NdeII	GATC	3 cut(s)	173, 327, 1094
NlaIII	CATG	7 cut(s)	83, 722, 791, 860, 983, 1009, 1118
NlaIV	GGNNCC	2 cut(s)	220, 973
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	1040
NspI	RCATGY	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	517
PdmI	GAANNNNTTC	2 cut(s)	191, 577
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	864
PfoI	TCCNGGA	1 cut(s)	1137
PkrI	GCNGC	8 cut(s)	245, 299, 343, 1156, 1177, 1228, 1237, 1249
PleI	GAGTC	2 cut(s)	242, 382
PpsI	GAGTC	2 cut(s)	242, 382
PsiI	TTATAA	1 cut(s)	1285
Psp6I	CCWGG	4 cut(s)	810, 974, 1090, 1137
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	4 cut(s)	810, 974, 1090, 1137
PspN4I	GGNNCC	2 cut(s)	220, 973
PspPI	GGNCC	2 cut(s)	104, 343
PsuI	RGATCY	1 cut(s)	1094
PsyI	GACNNNGTC	1 cut(s)	864
RsaI	GTAC	1 cut(s)	1010
RsaNI	GTAC	1 cut(s)	1009
RseI	CAYNNNNRTG	4 cut(s)	78, 609, 792, 963
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	840, 1128
SatI	GCNGC	8 cut(s)	244, 298, 342, 1155, 1176, 1227, 1236, 1248
Sau3AI	GATC	3 cut(s)	173, 327, 1094
Sau96I	GGNCC	2 cut(s)	104, 343
SchI	GAGTC	2 cut(s)	243, 382
ScrFI	CCNGG	4 cut(s)	812, 976, 1092, 1139
SduI	GDGCHC	2 cut(s)	223, 1078
SfaNI	GCATC	1 cut(s)	912
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	4 cut(s)	78, 609, 792, 963
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	6 cut(s)	97, 474, 508, 560, 723, 1230
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	2 cut(s)	675, 1061
StyD4I	CCNGG	4 cut(s)	810, 974, 1090, 1137
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	929
TaqI	TCGA	4 cut(s)	312, 386, 482, 961
TasI	AATT	6 cut(s)	97, 474, 508, 560, 723, 1230
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	5 cut(s)	246, 300, 344, 1178, 1250
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	840, 1128
Tru9I	TTAA	2 cut(s)	840, 1128
TscAI	CASTG	7 cut(s)	94, 183, 245, 751, 788, 1049, 1078
TseFI	GTSAC	1 cut(s)	1040
TseI	GCWGC	3 cut(s)	1154, 1226, 1235
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	5 cut(s)	17, 271, 636, 981, 996
TspRI	CASTG	7 cut(s)	94, 183, 245, 751, 788, 1049, 1078
Tth111I	GACNNNGTC	1 cut(s)	864
VneI	GTGCAC	1 cut(s)	1074
XapI	RAATTY	2 cut(s)	508, 560
XceI	RCATGY	1 cut(s)	1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 577
XspI	CTAG	2 cut(s)	675, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.