FvH4_5g20710

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002779
Physical Location & Seq
Forward (+)
12295514 .. 12300298
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20710.t2

Sequence Viewer

Length: 1296 bp
ATGACCCTATCCCACTCTGCTACTCTGTCTTCTCTGCACAATCACTACCACCACAACAACCATAGTCATTTGAATTCAGGCCCTTCTTCTTCTTCTTCGTCCGCTTCCACTTCTTTTCTCTGCTCTGCTTCTCTGGCAATCATTCCCTTTGCCACAAGGACTCTGGTTCTGAAGCTTTTTCGCCATTTCCGGTGTGCCCATTTGCTCAGAGTTCACTGTCGATTGATTGTTCTCCTTCTGGTGCCTTCTCTCTACTTCATCACAAGTCCTCGCCGTAGCTTCATTCTTGATTTCCTCTCTGTGATCGCTTTCTCTGCTGCCATTCTCATTTCTTTGAACGTTGCGCTGCCGCGTTTGGTCTCAATTCGGTTGTTTCTTGCTCGGTCCTTGCCGCTTTGTTCATCTTGTTACACCTCCAAGCTGAACAAGCCTCCCCCGCCTGTTCTTTGGTCAATTGGGTCCAAGCCAAAATCGGAGAAGAGGCCAAACTCTGGTTCCTGGGTGCAGGTTTATAGCAATGGGGATGTTTATGAGGGTGAGTTTGATAAAGGGAAGTGCTCAGGAAGTGGGGTTTATTATTATAATATGAGTGGGAGGTATGAGGGTGATTGGGTGGATGAGAAGTATGATGGTCATGGTGTGGAGACTTGGGCTAGAGGGAGCCGGTATCGCGGGCAGTATAGGCAGGGCTTGAGGCATGGAATTGGGGTGTATAGGTTCTTCACCGGTGATGTTTATGCCGGAGAGTGGTCTAATGGGCAGTGTCATGGGTGTGGAATACATACTTGTGCGGATGGGAGCCGGTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGACTTGGTCATTATCATTTCAGGAACGGAGACACATATGCTGGGGAATATTTTGCTGACAAGATGCATGGGTTTGGAGTGTATCAGTTTGGAAATGGACATCGTTATGAAGGAGCCTGGCATGAAGGAAGAAAGCAGGGACTTGGTACATACACTTTCAGAAATGGTGAAACACAATCTGGTCACTGGCAAAATGGGGTTATTGATCCCAGCATGCAAAATAGCCAACCTGGATCTCCATATGCTGTCAACCATGCCAAAGTTCTAAATGCAGTCCAGGATGCACGGAGAGCTGCTGAAAGAGCATATGAAGTGGCGAAGGTGGATGAAAGAGTGAAGAGAACTATAGCAACAGCTAATAAAGCAGCAAATGCTGCAAGAGTTGCGGCTGTAAAGGCTGTGCAAAAACAGATACATCAGTATAACAGTGATGGCACCTCTCCCTCACAACTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MORN

Protein Analysis

432

Amino Acids

47.89

Weight (kDa)

9.53

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 246 - 268 2.4e-07 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 2 cut(s) 241, 1271
AccB7I CCANNNNNTGG 1 cut(s) 491
AccII CGCG 2 cut(s) 352, 672
AciI CCGC 7 cut(s) 102, 350, 392, 437, 672, 791, 1223
AclI AACGTT 1 cut(s) 339
AclWI GGATC 2 cut(s) 1037, 1078
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 985
AfiI CCNNNNNNNGG 2 cut(s) 491, 747
AgeI ACCGGT 1 cut(s) 725
AgsI TTSAA 3 cut(s) 73, 337, 820
AjnI CCWGG 4 cut(s) 497, 953, 1066, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 5 cut(s) 175, 279, 421, 1130, 1193
AluI AGCT 5 cut(s) 175, 279, 421, 1130, 1193
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 3 cut(s) 364, 638, 861
AlwI GGATC 2 cut(s) 1037, 1078
AoxI GGCC 2 cut(s) 79, 482
ApeKI GCWGC 5 cut(s) 317, 346, 1130, 1202, 1211
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 725
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 80, 384, 459
AsuHPI GGTGA 5 cut(s) 548, 617, 715, 740, 1016
AvaII GGWCC 2 cut(s) 384, 459
BaeGI GKGCMC 1 cut(s) 199
BaeI ACNNNNGTAYC 2 cut(s) 1241, 1274
BanI GGYRCC 2 cut(s) 241, 1271
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 304, 333, 1117, 1198, 1214
BccI CCATC 3 cut(s) 623, 788, 1262
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 4 cut(s) 499, 955, 1068, 1115
BcoDI GTCTC 3 cut(s) 364, 638, 861
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 1182
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 8 cut(s) 318, 347, 350, 392, 1131, 1203, 1212, 1224
BlsI GCNGC 8 cut(s) 319, 348, 351, 393, 1132, 1204, 1213, 1225
Bme1390I CCNGG 4 cut(s) 499, 955, 1068, 1115
Bme18I GGWCC 2 cut(s) 384, 459
BmgT120I GGNCC 3 cut(s) 80, 384, 459
BmiI GGNNCC 7 cut(s) 243, 460, 496, 662, 800, 952, 1273
BmrFI CCNGG 4 cut(s) 499, 955, 1068, 1115
BmsI GCATC 2 cut(s) 891, 1108
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 2 cut(s) 189, 725
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 747
Bse118I RCCGGY 3 cut(s) 663, 725, 801
Bse1I ACTGG 1 cut(s) 1028
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 4 cut(s) 499, 955, 1068, 1115
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 5 cut(s) 529, 622, 799, 1123, 1168
BseLI CCNNNNNNNGG 2 cut(s) 491, 747
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 220, 573
BseNI ACTGG 1 cut(s) 1028
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 5 cut(s) 304, 333, 1117, 1198, 1214
BseYI CCCAGC 2 cut(s) 878, 1046
BsgI GTGCAG 2 cut(s) 20, 524
Bsh1236I CGCG 2 cut(s) 352, 672
BshFI GGCC 2 cut(s) 81, 484
BshNI GGYRCC 2 cut(s) 241, 1271
BshTI ACCGGT 1 cut(s) 725
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 5 cut(s) 190, 664, 726, 741, 802
BslFI GGGAC 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 491, 747
BsmAI GTCTC 3 cut(s) 364, 638, 861
BsmFI GGGAC 1 cut(s) 990
BsnI GGCC 2 cut(s) 81, 484
Bso31I GGTCTC 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 199, 560
Bsp143I GATC 3 cut(s) 303, 1042, 1070
BspACI CCGC 7 cut(s) 102, 350, 392, 437, 672, 791, 1223
BspANI GGCC 2 cut(s) 81, 484
BspCNI CTCAG 2 cut(s) 219, 572
BspFNI CGCG 2 cut(s) 352, 672
BspLI GGNNCC 7 cut(s) 243, 460, 496, 662, 800, 952, 1273
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 2 cut(s) 1037, 1078
BspT107I GGYRCC 2 cut(s) 241, 1271
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 3 cut(s) 663, 725, 801
BsrI ACTGG 1 cut(s) 1028
BssAI RCCGGY 3 cut(s) 663, 725, 801
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 3 cut(s) 303, 1042, 1070
Bst2UI CCWGG 4 cut(s) 499, 955, 1068, 1115
Bst4CI ACNGT 2 cut(s) 218, 1265
Bst6I CTCTTC 2 cut(s) 473, 1169
BstAPI GCANNNNNTGC 3 cut(s) 1208, 1211, 1220
BstC8I GCNNGC 2 cut(s) 674, 1052
BstDEI CTNAG 2 cut(s) 206, 559
BstF5I GGATG 5 cut(s) 529, 622, 799, 1123, 1168
BstFNI CGCG 2 cut(s) 352, 672
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 306, 1045, 1073
BstMAI GTCTC 3 cut(s) 364, 638, 861
BstMBI GATC 3 cut(s) 303, 1042, 1070
BstNI CCWGG 4 cut(s) 499, 955, 1068, 1115
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 4 cut(s) 497, 953, 1066, 1113
BstSFI CTRYAG 1 cut(s) 1182
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 2 cut(s) 352, 672
BstV1I GCAGC 5 cut(s) 304, 333, 1117, 1198, 1214
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1070
BsuRI GGCC 2 cut(s) 81, 484
BtsCI GGATG 5 cut(s) 529, 622, 799, 1123, 1168
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 4 cut(s) 214, 767, 1021, 1270
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 674, 1052
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 3 cut(s) 663, 725, 801
Cfr13I GGNCC 3 cut(s) 80, 384, 459
Csp6I GTAC 1 cut(s) 984
CspAI ACCGGT 1 cut(s) 725
CviAII CATG 8 cut(s) 635, 698, 767, 836, 905, 959, 1051, 1091
CviQI GTAC 1 cut(s) 984
DdeI CTNAG 2 cut(s) 206, 559
DpnI GATC 3 cut(s) 305, 1044, 1072
DpnII GATC 3 cut(s) 303, 1042, 1070
Eam1104I CTCTTC 2 cut(s) 473, 1169
EarI CTCTTC 2 cut(s) 473, 1169
Eco31I GGTCTC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 384, 459
Eco57I CTGAAG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 4 cut(s) 497, 953, 1066, 1113
EcoT22I ATGCAT 1 cut(s) 906
FaeI CATG 8 cut(s) 638, 701, 770, 839, 908, 962, 1054, 1094
FaqI GGGAC 1 cut(s) 990
FatI CATG 8 cut(s) 634, 697, 766, 835, 904, 958, 1050, 1090
FauI CCCGC 2 cut(s) 444, 665
FauNDI CATATG 3 cut(s) 874, 1078, 1144
Fnu4HI GCNGC 8 cut(s) 318, 347, 350, 392, 1131, 1203, 1212, 1224
FokI GGATG 5 cut(s) 536, 629, 806, 1130, 1175
Fsp4HI GCNGC 8 cut(s) 318, 347, 350, 392, 1131, 1203, 1212, 1224
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 345
GluI GCNGC 8 cut(s) 318, 347, 350, 392, 1131, 1203, 1212, 1224
GsaI CCCAGC 2 cut(s) 882, 1050
HaeIII GGCC 2 cut(s) 81, 484
HapII CCGG 5 cut(s) 190, 664, 726, 741, 802
HhaI GCGC 1 cut(s) 346
Hin1II CATG 8 cut(s) 638, 701, 770, 839, 908, 962, 1054, 1094
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 160
HpaII CCGG 5 cut(s) 190, 664, 726, 741, 802
HphI GGTGA 5 cut(s) 548, 617, 715, 740, 1016
Hpy166II GTNNAC 2 cut(s) 214, 1087
Hpy188I TCNGA 4 cut(s) 171, 209, 475, 998
Hpy188III TCNNGA 3 cut(s) 287, 561, 859
Hpy8I GTNNAC 2 cut(s) 214, 1087
HpyAV CCTTC 6 cut(s) 93, 245, 255, 941, 956, 1150
HpyCH4III ACNGT 2 cut(s) 218, 1265
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 8 cut(s) 37, 505, 904, 1054, 1109, 1121, 1214, 1240
HpyF3I CTNAG 2 cut(s) 206, 559
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 8 cut(s) 638, 701, 770, 839, 908, 962, 1054, 1094
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 3 cut(s) 303, 1042, 1070
LmnI GCTCC 3 cut(s) 660, 798, 950
Lsp1109I GCAGC 5 cut(s) 304, 333, 1117, 1198, 1214
LweI GCATC 2 cut(s) 891, 1108
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 407, 1019
MalI GATC 3 cut(s) 305, 1044, 1072
MboI GATC 3 cut(s) 303, 1042, 1070
MboII GAAGA 9 cut(s) 21, 78, 81, 84, 87, 490, 712, 978, 1186
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 2 cut(s) 199, 560
MluCI AATT 4 cut(s) 73, 363, 453, 702
MlyI GAGTC 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 906
MseI TTAA 1 cut(s) 1294
MslI CAYNNNNRTG 3 cut(s) 771, 786, 942
MspI CCGG 5 cut(s) 190, 664, 726, 741, 802
MspR9I CCNGG 4 cut(s) 499, 955, 1068, 1115
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 4 cut(s) 499, 955, 1068, 1115
MvnI CGCG 2 cut(s) 352, 672
NdeI CATATG 3 cut(s) 874, 1078, 1144
NdeII GATC 3 cut(s) 303, 1042, 1070
NlaIII CATG 8 cut(s) 638, 701, 770, 839, 908, 962, 1054, 1094
NlaIV GGNNCC 7 cut(s) 243, 460, 496, 662, 800, 952, 1273
NmuCI GTSAC 1 cut(s) 1019
NsiI ATGCAT 1 cut(s) 906
NspI RCATGY 1 cut(s) 1054
PaeI GCATGC 1 cut(s) 1054
PflFI GACNNNGTC 1 cut(s) 843
PflMI CCANNNNNTGG 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 1113
PinAI ACCGGT 1 cut(s) 725
PkrI GCNGC 8 cut(s) 319, 348, 351, 393, 1132, 1204, 1213, 1225
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PsiI TTATAA 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 339
Psp6I CCWGG 4 cut(s) 497, 953, 1066, 1113
PspFI CCCAGC 2 cut(s) 878, 1046
PspGI CCWGG 4 cut(s) 497, 953, 1066, 1113
PspN4I GGNNCC 7 cut(s) 243, 460, 496, 662, 800, 952, 1273
PspPI GGNCC 3 cut(s) 80, 384, 459
PsuI RGATCY 1 cut(s) 1070
PsyI GACNNNGTC 1 cut(s) 843
RsaI GTAC 1 cut(s) 985
RsaNI GTAC 1 cut(s) 984
RseI CAYNNNNRTG 3 cut(s) 771, 786, 942
SaqAI TTAA 1 cut(s) 1294
SatI GCNGC 8 cut(s) 318, 347, 350, 392, 1131, 1203, 1212, 1224
Sau3AI GATC 3 cut(s) 303, 1042, 1070
Sau96I GGNCC 3 cut(s) 80, 384, 459
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 4 cut(s) 499, 955, 1068, 1115
SduI GDGCHC 2 cut(s) 199, 560
SfaNI GCATC 2 cut(s) 891, 1108
SfcI CTRYAG 1 cut(s) 1182
SgrAI CRCCGGYG 1 cut(s) 725
SinI GGWCC 2 cut(s) 384, 459
SmiMI CAYNNNNRTG 3 cut(s) 771, 786, 942
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 4 cut(s) 73, 363, 453, 702
SsiI CCGC 7 cut(s) 102, 350, 392, 437, 672, 791, 1223
SspI AATATT 1 cut(s) 887
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 497, 953, 1066, 1113
TaaI ACNGT 2 cut(s) 218, 1265
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 220
TaqII GACCGA 1 cut(s) 372
TasI AATT 4 cut(s) 73, 363, 453, 702
TauI GCSGC 3 cut(s) 352, 394, 1226
Tru1I TTAA 1 cut(s) 1294
Tru9I TTAA 1 cut(s) 1294
TscAI CASTG 4 cut(s) 221, 767, 1028, 1270
TseFI GTSAC 1 cut(s) 1019
TseI GCWGC 5 cut(s) 317, 346, 1130, 1202, 1211
Tsp45I GTSAC 1 cut(s) 1019
TspDTI ATGAA 7 cut(s) 247, 271, 390, 960, 975, 1161, 1179
TspGWI ACGGA 2 cut(s) 879, 1138
TspRI CASTG 4 cut(s) 221, 767, 1028, 1270
Tth111I GACNNNGTC 1 cut(s) 843
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 384, 459
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 654
Zsp2I ATGCAT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.