RchiOBHm_Chr1g0344931

Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
37306560 .. 37309954
3395 bp
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UTR
Exon/CDS
Intron
PRQ57133

Sequence Viewer

Length: 1422 bp
ATGCATCAGAAGAAATCAGAAGCTCAGATCGGAAAAGAAAGCACCGGCCTCTCTTCCGATTTCAACCCCACCATAATCTCCGCCCCACCACCTTCATCTCTCGCTTCAATCTCCCACCAGTTCTCCCATTTCGCTCACTACCCATCTCTAAATGACGCCCCGATTCCTCAGACCATACCCTACAAGCGTCCCCTTCTGACCCAAGCTCACTCCTCTCTAGTCAAATCCCCGACCCTTTACAAACTCCAACCCGCCCCTCAAAACCCACCTCTCTTTTCTCCTTCCCTCGCCGCCAAGTCCGCCTTCTTCCGCCTCCTCCGCCGCGTCAACCGCCTCCGCCGCCTCTTCTTGCTCCTCTCCCTCCCCTTCTTCTACTTCCTCGTCTCTCACCCGAGTCATTCCTTCATTCTCGACTTCCTCTCAGCTTTCGCTTTCTCATCCGCATTGCTCTTCTCCCTCAATCTAGCCCTCCCTCGGCTTCCGTCTATCCGGCTTTTTCTGGCCAGGTCGTTTCCGATCAAGCTTAAGTCCTCTGCTTCATTGTCCAGGCCGCCGCTGCCGGTGTTCTGGTCAATCGGGTCGCGGCAGAAGCCGGAGAAGCGAGGGATTTCGGGGTGTTGGGTGCAGGCTTACAGCAACGGGGACGTGTATGAGGGTGAGTTTCATAAGGGGAAGTGTTCCGGGAGCGGGGTTTATTACTATTATATGAGTGGGAGGTATGAGGGGGATTGGGTGGATGAGAAGTATGATGGATATGGTGTAGAGACTTGGGCTAGAGGGAGCCGGTATCGCGGCCAGTATAGGCAGGGGCTTAGGCATGGTTTCGGGGTGTATAGGTTTTACACCGGGGATGTTTATGCCGGGGAATGGTCTAATGGGCAGAGTCATGGGTGTGGAGTTCATACATGTGAGGATGGGAGTAGATATGTAGGGGAATTCAAGTGGGGTGTCAAGCATGGCCTTGGCCACTACCATTTCAGAAATGGAGACACTTATGCTGGAGAGTATTTTGCGGACAAAATGCATGGGTTCGGGGTCTATCAATTTGCAAATGGGCATCGTTATGAGGGAGCCTGGCATGAGGGTAGAAGGCAAGGCCTCGGTATGTACACGTTTAGAAATGGGGAGACTCAAGCTGGTCACTGGCAAAATGGAATTCTTGATGTTCCAAGCACACAGAATGCAAGTTTTCCTGTATCTCCTGTTGCTGTTAATCATTCCAAAGTCCTTAATGCAGTTCAGGAAGCACGAATAGTGGCGGAGAAAGCCTATGATGTGGCCAAGGTGGATGAAAGAGTTAATAGGGCTGTTATTGCAGCCAACAGGGCCGCCAATGCAGCTAGAGTAGCAGCCGTGAAAGCTGTCCAAAAACAAATGCAGCATAATAGTAGCAGTGACAACATTCCAATTCCAGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.89

Weight (kDa)

9.68

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 263 - 285 6.6e-06 MORN repeat
MORN PF02493 286 - 308 5.1e-06 MORN repeat
MORN PF02493 332 - 354 2e-06 MORN repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 687
AccII CGCG 3 cut(s) 324, 583, 792
AcoI YGGCCR 4 cut(s) 501, 793, 964, 1278
AcsI RAATTY 2 cut(s) 935, 1155
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 1109
AfiI CCNNNNNNNGG 3 cut(s) 474, 687, 867
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 3 cut(s) 645, 905, 1110
AgsI TTSAA 3 cut(s) 64, 108, 940
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 3 cut(s) 503, 545, 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 7 cut(s) 23, 206, 425, 523, 1136, 1340, 1361
AluI AGCT 7 cut(s) 23, 206, 425, 523, 1136, 1340, 1361
Alw26I GTCTC 4 cut(s) 388, 758, 981, 1121
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 9 cut(s) 46, 501, 548, 793, 958, 964, 1096, 1278, 1326
ApeKI GCWGC 5 cut(s) 556, 1316, 1337, 1349, 1378
ApoI RAATTY 2 cut(s) 935, 1155
AspS9I GGNCC 1 cut(s) 1326
AsuC2I CCSGG 3 cut(s) 682, 847, 862
AsuHPI GGTGA 2 cut(s) 380, 668
AvaI CYCGRG 1 cut(s) 391
BalI TGGCCA 3 cut(s) 503, 966, 1280
BbvI GCAGC 5 cut(s) 543, 1328, 1349, 1361, 1390
BccI CCATC 3 cut(s) 151, 743, 908
BceAI ACGGC 1 cut(s) 1337
BciT130I CCWGG 3 cut(s) 505, 547, 1075
BcnI CCSGG 3 cut(s) 682, 847, 862
BcoDI GTCTC 4 cut(s) 388, 758, 981, 1121
BfaI CTAG 4 cut(s) 218, 464, 774, 1341
BfrI CTTAAG 1 cut(s) 524
BglI GCCNNNNNGGC 1 cut(s) 1325
Bme1390I CCNGG 6 cut(s) 505, 547, 682, 847, 862, 1075
BmeT110I CYCGRG 1 cut(s) 391
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 1326
BmiI GGNNCC 2 cut(s) 782, 1072
BmrFI CCNGG 6 cut(s) 505, 547, 682, 847, 862, 1075
BmsI GCATC 2 cut(s) 13, 1066
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 1116
BpuMI CCSGG 3 cut(s) 682, 847, 862
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 6 cut(s) 473, 846, 861, 961, 1099, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 474, 687, 867
Bse118I RCCGGY 3 cut(s) 44, 559, 783
Bse1I ACTGG 4 cut(s) 118, 796, 1148, 1412
Bse3DI GCAATG 1 cut(s) 443
BseBI CCWGG 3 cut(s) 505, 547, 1075
BseDI CCNNGG 6 cut(s) 473, 846, 861, 961, 1099, 1281
BseGI GGATG 5 cut(s) 437, 742, 856, 919, 1294
BseLI CCNNNNNNNGG 3 cut(s) 474, 687, 867
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 38, 182, 435
BseNI ACTGG 4 cut(s) 118, 796, 1148, 1412
BseRI GAGGAG 3 cut(s) 202, 305, 344
BseXI GCAGC 5 cut(s) 543, 1328, 1349, 1361, 1390
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 3 cut(s) 324, 583, 792
BshFI GGCC 9 cut(s) 48, 503, 550, 795, 960, 966, 1098, 1280, 1328
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 8 cut(s) 45, 490, 560, 593, 681, 784, 846, 861
BslFI GGGAC 2 cut(s) 174, 656
BslI CCNNNNNNNGG 3 cut(s) 474, 687, 867
BsmAI GTCTC 4 cut(s) 388, 758, 981, 1121
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 174, 656
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 9 cut(s) 48, 503, 550, 795, 960, 966, 1098, 1280, 1328
BsoBI CYCGRG 1 cut(s) 391
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 2 cut(s) 27, 516
BspANI GGCC 9 cut(s) 48, 503, 550, 795, 960, 966, 1098, 1280, 1328
BspCNI CTCAG 3 cut(s) 37, 181, 434
BspFNI CGCG 3 cut(s) 324, 583, 792
BspLI GGNNCC 2 cut(s) 782, 1072
BspQI GCTCTTC 1 cut(s) 455
BspTI CTTAAG 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 443
BsrFI RCCGGY 3 cut(s) 44, 559, 783
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 4 cut(s) 118, 796, 1148, 1412
BssAI RCCGGY 3 cut(s) 44, 559, 783
BssECI CCNNGG 6 cut(s) 473, 846, 861, 961, 1099, 1281
BssMI GATC 2 cut(s) 27, 516
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 961, 1281
Bst2UI CCWGG 3 cut(s) 505, 547, 1075
Bst6I CTCTTC 3 cut(s) 58, 350, 455
BstACI GRCGYC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 1107
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 4 cut(s) 24, 168, 421, 812
BstF5I GGATG 5 cut(s) 437, 742, 856, 919, 1294
BstFNI CGCG 3 cut(s) 324, 583, 792
BstKTI GATC 2 cut(s) 30, 519
BstMAI GTCTC 4 cut(s) 388, 758, 981, 1121
BstMBI GATC 2 cut(s) 27, 516
BstNI CCWGG 3 cut(s) 505, 547, 1075
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 6 cut(s) 503, 545, 680, 845, 860, 1073
BstUI CGCG 3 cut(s) 324, 583, 792
BstV1I GCAGC 5 cut(s) 543, 1328, 1349, 1361, 1390
BsuRI GGCC 9 cut(s) 48, 503, 550, 795, 960, 966, 1098, 1280, 1328
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 5 cut(s) 437, 742, 856, 919, 1294
BtsI GCAGTG 1 cut(s) 1399
BtsIMutI CAGTG 2 cut(s) 1141, 1399
Cac8I GCNNGC 1 cut(s) 627
Cfr10I RCCGGY 3 cut(s) 44, 559, 783
Cfr13I GGNCC 1 cut(s) 1326
CseI GACGC 3 cut(s) 164, 176, 313
Csp6I GTAC 1 cut(s) 1108
CviAII CATG 6 cut(s) 818, 887, 906, 956, 1025, 1079
CviQI GTAC 1 cut(s) 1108
DdeI CTNAG 4 cut(s) 24, 168, 421, 812
DpnI GATC 2 cut(s) 29, 518
DpnII GATC 2 cut(s) 27, 516
EaeI YGGCCR 4 cut(s) 501, 793, 964, 1278
Eam1104I CTCTTC 3 cut(s) 58, 350, 455
EarI CTCTTC 3 cut(s) 58, 350, 455
EciI GGCGGA 6 cut(s) 70, 289, 299, 308, 326, 1274
Eco130I CCWWGG 2 cut(s) 961, 1281
Eco147I AGGCCT 1 cut(s) 1098
Eco88I CYCGRG 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 935, 1155
EcoRII CCWGG 3 cut(s) 503, 545, 1073
EcoT14I CCWWGG 2 cut(s) 961, 1281
EcoT22I ATGCAT 2 cut(s) 6, 1026
ErhI CCWWGG 2 cut(s) 961, 1281
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 6 cut(s) 821, 890, 909, 959, 1028, 1082
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 174, 656
FatI CATG 6 cut(s) 817, 886, 905, 955, 1024, 1078
FauI CCCGC 2 cut(s) 259, 680
FokI GGATG 5 cut(s) 424, 749, 863, 926, 1301
FspBI CTAG 4 cut(s) 218, 464, 774, 1341
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 9 cut(s) 48, 503, 550, 795, 960, 966, 1098, 1280, 1328
HapII CCGG 8 cut(s) 45, 490, 560, 593, 681, 784, 846, 861
HgaI GACGC 3 cut(s) 164, 176, 313
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 6 cut(s) 821, 890, 909, 959, 1028, 1082
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 4 cut(s) 163, 394, 883, 1129
HpaII CCGG 8 cut(s) 45, 490, 560, 593, 681, 784, 846, 861
HphI GGTGA 2 cut(s) 380, 668
Hpy166II GTNNAC 2 cut(s) 328, 1110
Hpy188III TCNNGA 3 cut(s) 410, 1160, 1241
Hpy8I GTNNAC 2 cut(s) 328, 1110
HpyAV CCTTC 7 cut(s) 102, 203, 291, 313, 376, 412, 1083
HpyCH4IV ACGT 2 cut(s) 645, 1112
HpyCH4V TGCA 9 cut(s) 4, 625, 1024, 1049, 1184, 1235, 1316, 1337, 1378
HpyF3I CTNAG 4 cut(s) 24, 168, 421, 812
HpySE526I ACGT 2 cut(s) 645, 1112
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 6 cut(s) 821, 890, 909, 959, 1028, 1082
Kzo9I GATC 2 cut(s) 27, 516
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 4 cut(s) 357, 684, 780, 1070
Lsp1109I GCAGC 5 cut(s) 543, 1328, 1349, 1361, 1390
LweI GCATC 2 cut(s) 13, 1066
MaeI CTAG 4 cut(s) 218, 464, 774, 1341
MaeII ACGT 2 cut(s) 645, 1112
MaeIII GTNAC 2 cut(s) 1139, 1394
MalI GATC 2 cut(s) 29, 518
MbiI CCGCTC 1 cut(s) 687
MboI GATC 2 cut(s) 27, 516
MboII GAAGA 6 cut(s) 22, 45, 298, 337, 361, 442
MlsI TGGCCA 3 cut(s) 503, 966, 1280
MluCI AATT 4 cut(s) 935, 1043, 1155, 1407
MluNI TGGCCA 3 cut(s) 503, 966, 1280
MlyI GAGTC 3 cut(s) 403, 892, 1123
MmeI TCCRAC 1 cut(s) 271
Mox20I TGGCCA 3 cut(s) 503, 966, 1280
Mph1103I ATGCAT 2 cut(s) 6, 1026
MscI TGGCCA 3 cut(s) 503, 966, 1280
MseI TTAA 4 cut(s) 525, 1212, 1230, 1299
MslI CAYNNNNRTG 3 cut(s) 891, 906, 1062
Msp20I TGGCCA 3 cut(s) 503, 966, 1280
MspA1I CMGCKG 1 cut(s) 556
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 8 cut(s) 45, 490, 560, 593, 681, 784, 846, 861
MspR9I CCNGG 6 cut(s) 505, 547, 682, 847, 862, 1075
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 3 cut(s) 505, 547, 1075
MvnI CGCG 3 cut(s) 324, 583, 792
NciI CCSGG 3 cut(s) 682, 847, 862
NdeII GATC 2 cut(s) 27, 516
NlaIII CATG 6 cut(s) 821, 890, 909, 959, 1028, 1082
NlaIV GGNNCC 2 cut(s) 782, 1072
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 1139, 1394
NsiI ATGCAT 2 cut(s) 6, 1026
NspI RCATGY 1 cut(s) 909
PceI AGGCCT 1 cut(s) 1098
PciI ACATGT 1 cut(s) 905
PciSI GCTCTTC 1 cut(s) 455
PctI GAATGC 1 cut(s) 1186
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 680
PleI GAGTC 3 cut(s) 402, 891, 1123
PpsI GAGTC 3 cut(s) 402, 891, 1123
PscI ACATGT 1 cut(s) 905
Psp6I CCWGG 3 cut(s) 503, 545, 1073
PspGI CCWGG 3 cut(s) 503, 545, 1073
PspN4I GGNNCC 2 cut(s) 782, 1072
PspPI GGNCC 1 cut(s) 1326
RsaI GTAC 1 cut(s) 1109
RsaNI GTAC 1 cut(s) 1108
RseI CAYNNNNRTG 3 cut(s) 891, 906, 1062
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 4 cut(s) 525, 1212, 1230, 1299
Sau3AI GATC 2 cut(s) 27, 516
Sau96I GGNCC 1 cut(s) 1326
SchI GAGTC 3 cut(s) 403, 892, 1123
ScrFI CCNGG 6 cut(s) 505, 547, 682, 847, 862, 1075
SfaNI GCATC 2 cut(s) 13, 1066
SmiMI CAYNNNNRTG 3 cut(s) 891, 906, 1062
SmlI CTYRAG 2 cut(s) 524, 1131
SmoI CTYRAG 2 cut(s) 524, 1131
Sse9I AATT 4 cut(s) 935, 1043, 1155, 1407
SseBI AGGCCT 1 cut(s) 1098
SspMI CTAG 4 cut(s) 218, 464, 774, 1341
StuI AGGCCT 1 cut(s) 1098
StyD4I CCNGG 6 cut(s) 503, 545, 680, 845, 860, 1073
StyI CCWWGG 2 cut(s) 961, 1281
TaiI ACGT 2 cut(s) 648, 1115
TaqI TCGA 1 cut(s) 411
TasI AATT 4 cut(s) 935, 1043, 1155, 1407
TatI WGTACW 1 cut(s) 1107
TauI GCSGC 8 cut(s) 293, 324, 342, 553, 556, 586, 795, 1331
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 4 cut(s) 525, 1212, 1230, 1299
Tru9I TTAA 4 cut(s) 525, 1212, 1230, 1299
TscAI CASTG 2 cut(s) 1148, 1399
TseFI GTSAC 2 cut(s) 1139, 1394
TseI GCWGC 5 cut(s) 556, 1316, 1337, 1349, 1378
Tsp45I GTSAC 2 cut(s) 1139, 1394
TspDTI ATGAA 6 cut(s) 84, 394, 528, 653, 890, 1305
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 2 cut(s) 1148, 1399
Vha464I CTTAAG 1 cut(s) 524
XapI RAATTY 2 cut(s) 935, 1155
XceI RCATGY 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XspI CTAG 4 cut(s) 218, 464, 774, 1341
Zsp2I ATGCAT 2 cut(s) 6, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.