AT2G37680

degradation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005099
Physical Location & Seq
Reverse (-)
15803243 .. 15805673
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37680.2

Sequence Viewer

Length: 648 bp
ATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTGATCCTGGGAATCGATCACCACTTCCCCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTTCTGGTACGCAAAATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGATACAGGGTATTGACCTTGAACATGGTTATCTTTGTGGCACCATGGAAGCTCTAAACGTTCCCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATTATACCTTTTACACCGGAAAATGGGAAGCAACGAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCGTCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGATGGTGGCAGGCAATTGGATCTTAACAATTATCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAACGTTGGCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGATGGTTCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

215

Amino Acids

24.08

Weight (kDa)

4.62

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 60 - 229 7.7e-52 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 1 cut(s) 543
AclI AACGTT 2 cut(s) 228, 468
AclWI GGATC 3 cut(s) 47, 420, 551
AcoI YGGCCR 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 3 cut(s) 175, 312, 377
AgsI TTSAA 2 cut(s) 191, 389
AjnI CCWGG 2 cut(s) 55, 102
AluBI AGCT 6 cut(s) 152, 221, 497, 583, 589, 624
AluI AGCT 6 cut(s) 152, 221, 497, 583, 589, 624
Alw26I GTCTC 2 cut(s) 133, 334
AlwI GGATC 3 cut(s) 47, 420, 551
AlwNI CAGNNNCTG 2 cut(s) 50, 583
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 525
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 19, 60
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 537
BccI CCATC 5 cut(s) 275, 389, 438, 524, 545
BciT130I CCWGG 2 cut(s) 57, 104
BcoDI GTCTC 2 cut(s) 133, 334
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 611
BisI GCNGC 1 cut(s) 526
BlsI GCNGC 1 cut(s) 527
Bme1390I CCNGG 2 cut(s) 57, 104
BmiI GGNNCC 2 cut(s) 211, 535
BmrFI CCNGG 2 cut(s) 57, 104
BoxI GACNNNNGTC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 56, 213, 234
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 312, 377
Bse118I RCCGGY 1 cut(s) 4
BseBI CCWGG 2 cut(s) 57, 104
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 56, 213, 234
BseLI CCNNNNNNNGG 3 cut(s) 175, 312, 377
BseXI GCAGC 1 cut(s) 537
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 64
BsiSI CCGG 2 cut(s) 5, 306
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 3 cut(s) 175, 312, 377
BsmAI GTCTC 2 cut(s) 133, 334
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 5 cut(s) 52, 65, 412, 556, 611
Bsp19I CCATGG 2 cut(s) 213, 234
BspACI CCGC 1 cut(s) 543
BspANI GGCC 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 211, 535
BspMAI CTGCAG 1 cut(s) 527
BspPI GGATC 3 cut(s) 47, 420, 551
BspT107I GGYRCC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 56, 213, 234
BssMI GATC 5 cut(s) 52, 65, 412, 556, 611
BssT1I CCWWGG 2 cut(s) 213, 234
Bst2UI CCWGG 2 cut(s) 57, 104
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 33, 100, 404
BstDSI CCRYGG 2 cut(s) 213, 234
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 55, 68, 415, 559, 614
BstMAI GTCTC 2 cut(s) 133, 334
BstMBI GATC 5 cut(s) 52, 65, 412, 556, 611
BstMWI GCNNNNNNNGC 2 cut(s) 104, 522
BstNI CCWGG 2 cut(s) 57, 104
BstPAI GACNNNNGTC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 55, 102
BstSFI CTRYAG 1 cut(s) 523
BstSNI TACGTA 1 cut(s) 511
BstV1I GCAGC 1 cut(s) 537
BstX2I RGATCY 2 cut(s) 412, 611
BstYI RGATCY 2 cut(s) 412, 611
Bsu15I ATCGAT 1 cut(s) 64
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 2 cut(s) 213, 234
BtgZI GCGATG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 33, 100, 404
CaiI CAGNNNCTG 2 cut(s) 50, 583
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 64
Csp6I GTAC 1 cut(s) 117
CviAII CATG 3 cut(s) 194, 214, 235
CviJI RGCY 7 cut(s) 102, 152, 221, 497, 583, 589, 624
CviKI_1 RGCY 7 cut(s) 102, 152, 221, 497, 583, 589, 624
CviQI GTAC 1 cut(s) 117
DpnI GATC 5 cut(s) 54, 67, 414, 558, 613
DpnII GATC 5 cut(s) 52, 65, 412, 556, 611
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 213, 234
Eco57I CTGAAG 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 55, 102
EcoT14I CCWWGG 2 cut(s) 213, 234
ErhI CCWWGG 2 cut(s) 213, 234
FaeI CATG 3 cut(s) 197, 217, 238
FaqI GGGAC 1 cut(s) 393
FatI CATG 3 cut(s) 193, 213, 234
Fnu4HI GCNGC 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 526
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 605
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 5, 306
HhaI GCGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 197, 217, 238
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 2 cut(s) 163, 601
HindII GTYRAC 2 cut(s) 163, 601
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 61, 159, 389
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 2 cut(s) 5, 306
HphI GGTGA 2 cut(s) 19, 60
Hpy166II GTNNAC 5 cut(s) 86, 163, 466, 485, 601
Hpy188I TCNGA 2 cut(s) 394, 579
Hpy188III TCNNGA 2 cut(s) 45, 169
Hpy8I GTNNAC 5 cut(s) 86, 163, 466, 485, 601
HpyAV CCTTC 3 cut(s) 136, 260, 599
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 4 cut(s) 165, 228, 468, 510
HpyCH4V TGCA 2 cut(s) 525, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 522
HpySE526I ACGT 4 cut(s) 165, 228, 468, 510
Hsp92II CATG 3 cut(s) 197, 217, 238
HspAI GCGC 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 5 cut(s) 52, 65, 412, 556, 611
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 1 cut(s) 537
MaeI CTAG 1 cut(s) 81
MaeII ACGT 4 cut(s) 165, 228, 468, 510
MalI GATC 5 cut(s) 54, 67, 414, 558, 613
MboI GATC 5 cut(s) 52, 65, 412, 556, 611
MboII GAAGA 4 cut(s) 341, 365, 621, 621
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 412, 611
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 3 cut(s) 289, 407, 421
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 3 cut(s) 139, 318, 381
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 417, 600
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 543
MspI CCGG 2 cut(s) 5, 306
MspR9I CCNGG 2 cut(s) 57, 104
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 2 cut(s) 57, 104
MwoI GCNNNNNNNGC 2 cut(s) 104, 522
NcoI CCATGG 2 cut(s) 213, 234
NdeII GATC 5 cut(s) 52, 65, 412, 556, 611
NlaIII CATG 3 cut(s) 197, 217, 238
NlaIV GGNNCC 2 cut(s) 211, 535
NmeAIII GCCGAG 1 cut(s) 72
PfeI GAWTC 2 cut(s) 61, 389
PkrI GCNGC 1 cut(s) 527
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 511
PshAI GACNNNNGTC 1 cut(s) 346
Psp1406I AACGTT 2 cut(s) 228, 468
Psp6I CCWGG 2 cut(s) 55, 102
PspGI CCWGG 2 cut(s) 55, 102
PspN4I GGNNCC 2 cut(s) 211, 535
PstI CTGCAG 1 cut(s) 527
PstNI CAGNNNCTG 2 cut(s) 50, 583
PsuI RGATCY 2 cut(s) 412, 611
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 417, 600
SatI GCNGC 1 cut(s) 526
Sau3AI GATC 5 cut(s) 52, 65, 412, 556, 611
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 57, 104
SfcI CTRYAG 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 511
Sse9I AATT 3 cut(s) 289, 407, 421
SsiI CCGC 1 cut(s) 543
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 55, 102
StyI CCWWGG 2 cut(s) 213, 234
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 4 cut(s) 168, 231, 471, 513
TaqI TCGA 1 cut(s) 64
TasI AATT 3 cut(s) 289, 407, 421
TfiI GAWTC 2 cut(s) 61, 389
Tru1I TTAA 2 cut(s) 417, 600
Tru9I TTAA 2 cut(s) 417, 600
TseI GCWGC 1 cut(s) 525
TspGWI ACGGA 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.