Rorug03G0079000

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005099
Physical Location & Seq
Forward (+)
6197767 .. 6198266
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0079000.1

Sequence Viewer

Length: 483 bp
ATGTCTCTTATAACTGACGAGGTGAGAGCCAAGGCTGATGAGCTCTACCATGGTGATGCTATCTGCCAGGAGAAGTCAAAGTTCTTGCTCACAGAGATGGGTCTCCCCAATGGGCTTCTGCCCATGAAGGACATGTTGGAATGTGGCTACATCAAAGACACTGGCTTTGTTTGGCTCAAGCAGAAGAAGAGCACCACCCACAAGTTTGAGAAGGTTGGGAGGCTGGCGAGCTATGCAACTGAGATCACAGCCACTGTTGAGAAGGGCAAGATCAGTAAGCTCACTGGAGTCAAGACCAAGGAGCTCTTGGTCTGGGTCTCACTCAGTGACATCTATTTGGATGACCCCCCAACTGGGAAGATCACCTTCAAGTCTCCTACAGGGCTATTCAGGACATTTCCTGCCTCGGCTTTCGAGATTGATGGACCTGATGGTGGCAAGTCTCTGGAGGTCAAGGACGTCCCCGGAGCTGTGGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

160

Amino Acids

17.59

Weight (kDa)

6.15

Isoelectric Point (pI)

24.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 139 1.3e-30 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AatII GACGTC 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 353, 354, 434
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 43, 231, 280, 304, 470
AluI AGCT 5 cut(s) 43, 231, 280, 304, 470
Alw21I GWGCWC 3 cut(s) 45, 194, 306
Alw26I GTCTC 5 cut(s) 9, 107, 322, 378, 447
AlwNI CAGNNNCTG 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 3 cut(s) 34, 65, 355
AvaII GGWCC 1 cut(s) 425
BanII GRGCYC 2 cut(s) 45, 306
Bbv12I GWGCWC 3 cut(s) 45, 194, 306
BccI CCATC 3 cut(s) 91, 416, 425
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 5 cut(s) 9, 107, 322, 378, 447
BfaI CTAG 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 378
Bme1390I CCNGG 2 cut(s) 68, 465
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 2 cut(s) 68, 465
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 306, 467
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 2 cut(s) 107, 322
BsaJI CCNNGG 5 cut(s) 30, 49, 297, 405, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 354, 434
Bse1I ACTGG 3 cut(s) 166, 289, 358
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 5 cut(s) 30, 49, 297, 405, 463
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 3 cut(s) 353, 354, 434
BseMII CTCAG 2 cut(s) 231, 337
BseNI ACTGG 3 cut(s) 166, 289, 358
BsiHKAI GWGCWC 3 cut(s) 45, 194, 306
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 353, 354, 434
BsmAI GTCTC 5 cut(s) 9, 107, 322, 378, 447
BsmFI GGGAC 1 cut(s) 446
Bso31I GGTCTC 2 cut(s) 107, 322
Bsp1286I GDGCHC 3 cut(s) 45, 194, 306
Bsp143I GATC 3 cut(s) 243, 270, 360
Bsp19I CCATGG 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 232, 336
BspQI GCTCTTC 1 cut(s) 182
BspTNI GGTCTC 2 cut(s) 107, 322
BsrI ACTGG 3 cut(s) 166, 289, 358
BssECI CCNNGG 5 cut(s) 30, 49, 297, 405, 463
BssMI GATC 3 cut(s) 243, 270, 360
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 3 cut(s) 30, 49, 297
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 225, 229
BstDEI CTNAG 2 cut(s) 240, 323
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 3 cut(s) 246, 273, 363
BstMAI GTCTC 5 cut(s) 9, 107, 322, 378, 447
BstMBI GATC 3 cut(s) 243, 270, 360
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 66, 463
BstSFI CTRYAG 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 4 cut(s) 159, 252, 282, 331
Cac8I GCNNGC 2 cut(s) 225, 229
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 425
CviAII CATG 3 cut(s) 50, 124, 133
DdeI CTNAG 2 cut(s) 240, 323
DpnI GATC 3 cut(s) 245, 272, 362
DpnII GATC 3 cut(s) 243, 270, 360
DraIII CACNNNGTG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 2 cut(s) 43, 304
Eco130I CCWWGG 3 cut(s) 30, 49, 297
Eco24I GRGCYC 2 cut(s) 45, 306
Eco31I GGTCTC 2 cut(s) 107, 322
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 2 cut(s) 43, 304
EcoICRI GAGCTC 2 cut(s) 43, 304
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 3 cut(s) 30, 49, 297
EcoT38I GRGCYC 2 cut(s) 45, 306
ErhI CCWWGG 3 cut(s) 30, 49, 297
FaeI CATG 3 cut(s) 53, 127, 136
FaiI YATR 5 cut(s) 11, 51, 125, 134, 234
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 350, 382
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 49, 123, 132
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 2 cut(s) 45, 306
FspBI CTAG 1 cut(s) 481
GsuI CTGGAG 2 cut(s) 306, 467
HapII CCGG 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 53, 127, 136
HinfI GANTC 1 cut(s) 288
HpaII CCGG 1 cut(s) 465
HphI GGTGA 3 cut(s) 34, 65, 355
Hpy188III TCNNGA 4 cut(s) 292, 391, 415, 446
HpyAV CCTTC 4 cut(s) 121, 205, 256, 376
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 240, 323
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 53, 127, 136
Kzo9I GATC 3 cut(s) 243, 270, 360
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 301, 467
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 481
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 245, 272, 362
MboI GATC 3 cut(s) 243, 270, 360
MboII GAAGA 3 cut(s) 196, 199, 370
MhlI GDGCHC 3 cut(s) 45, 194, 306
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 13, 213, 415, 442, 469
MslI CAYNNNNRTG 2 cut(s) 54, 95
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 68, 465
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 1 cut(s) 49
NdeII GATC 3 cut(s) 243, 270, 360
NlaIII CATG 3 cut(s) 53, 127, 136
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PscI ACATGT 1 cut(s) 132
PsiI TTATAA 1 cut(s) 11
Psp124BI GAGCTC 2 cut(s) 45, 306
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 254
RseI CAYNNNNRTG 2 cut(s) 54, 95
SacI GAGCTC 2 cut(s) 45, 306
SapI GCTCTTC 1 cut(s) 182
Sau3AI GATC 3 cut(s) 243, 270, 360
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 68, 465
SduI GDGCHC 3 cut(s) 45, 194, 306
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 54, 95
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SspMI CTAG 1 cut(s) 481
SstI GAGCTC 2 cut(s) 45, 306
StyD4I CCNGG 2 cut(s) 66, 463
StyI CCWWGG 3 cut(s) 30, 49, 297
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 414
TscAI CASTG 4 cut(s) 166, 259, 289, 331
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 4 cut(s) 166, 259, 289, 331
VpaK11BI GGWCC 1 cut(s) 425
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XspI CTAG 1 cut(s) 481
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.