Rh3DG146300

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005099
Physical Location & Seq
Forward (+)
12504999 .. 12507565
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG146300.1

Sequence Viewer

Length: 273 bp
ATGGAAGCACTTAATGTTCCCATGGCTGACACACCAGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACACGATGGTGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTTTTGAGACGGAAGAAGCAATACTTCGTGAATGTTGGCACAGACTCCGGTTTGACTATAGCTGGCTTTTACTATTGCGGCGGTGCCTACGAGGGACGACCTAGTAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

90

Amino Acids

10.32

Weight (kDa)

6.06

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 2 - 79 3.6e-15 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 2 cut(s) 237, 240
AcsI RAATTY 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 34, 131
AvaII GGWCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 35, 137
BseDI CCNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 35, 137
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 237, 240
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 35, 137
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 90, 130
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 26, 221, 225
CviKI_1 RGCY 3 cut(s) 26, 221, 225
DdeI CTNAG 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 81, 125, 218
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 238
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 34, 131
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 47, 156
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 25
LpnPI CCDG 4 cut(s) 48, 118, 207, 220
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 2 cut(s) 79, 184
MluCI AATT 2 cut(s) 76, 140
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 1 cut(s) 244
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 207
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 197
SetI ASST 3 cut(s) 47, 223, 262
SfcI CTRYAG 1 cut(s) 216
SgeI CNNG 9 cut(s) 34, 47, 85, 125, 145, 199, 219, 234, 262
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 76, 140
SsiI CCGC 2 cut(s) 237, 240
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 21
TasI AATT 2 cut(s) 76, 140
TauI GCSGC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 97, 137
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 97, 137
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.