Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008430.1

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Reverse (-)

17707 .. 19213

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008430.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgccggtcagagcggcagagacctccgcgcctcctcaacaccattcaggttcaaactgcggacatacatctcccccgcccttcacacttttaagcgttggccagggcttctccggtactcaaaatgtttcgagtctgcagaaagaagaagcttggagagtaaatgttcggatacaagggtgtgatcttgagaatggttatctgtgtggaaccatggaagcacttaatgttcccatggctgacacaccaatttgcttcaatgtattcattaacaacagtcaattagttcagcagctgcggaactggtggaagtgggaagcaacacacgatgatgatataaggcactggaccaaatttccttctttttctgctcttttgagccgagtggaagttgatggtggcaaatcattagatctcagcaactataaatacatattcatgagatggaaggagcaatactttgtgaatgttggcacagactgtggtttgactatagccggcttttactatgtgtgtttctcatgtagtgatggctccatcaacggcttttattatgatcctaatagcagcccgttccagaagcttgagctgaaaatccacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

201

Amino Acids

22.72

Weight (kDa)

6.04

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	29
AciI	CCGC	5 cut(s)	14, 27, 60, 77, 298
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	54, 259
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	152, 295, 583, 589
AluI	AGCT	4 cut(s)	152, 295, 583, 589
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	292, 295, 567
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	348
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BalI	TGGCCA	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BbvI	GCAGC	3 cut(s)	282, 304, 579
BccI	CCATC	4 cut(s)	389, 438, 524, 545
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	137, 492
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	4 cut(s)	15, 293, 296, 568
BlsI	GCNGC	4 cut(s)	16, 294, 297, 569
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	211, 535
BmrFI	CCNGG	1 cut(s)	104
BpuEI	CTTGAG	2 cut(s)	209, 605
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	103, 213, 234
BsaWI	WCCGGW	1 cut(s)	113
Bse118I	RCCGGY	2 cut(s)	4, 497
Bse1I	ACTGG	2 cut(s)	308, 350
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	103, 213, 234
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	2 cut(s)	308, 350
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	282, 304, 579
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	5, 114, 498
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	184, 412, 556
Bsp19I	CCATGG	2 cut(s)	213, 234
BspACI	CCGC	5 cut(s)	14, 27, 60, 77, 298
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	211, 535
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	4, 497
BsrI	ACTGG	2 cut(s)	308, 350
BssAI	RCCGGY	2 cut(s)	4, 497
BssECI	CCNNGG	3 cut(s)	103, 213, 234
BssMI	GATC	3 cut(s)	184, 412, 556
BssT1I	CCWWGG	2 cut(s)	213, 234
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	278, 482
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	2 cut(s)	213, 234
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	187, 415, 559
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	3 cut(s)	184, 412, 556
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	137, 492
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	282, 304, 579
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	213, 234
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	295
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	2 cut(s)	4, 497
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	214, 235, 439, 522
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	3 cut(s)	186, 414, 558
DpnII	GATC	3 cut(s)	184, 412, 556
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	213, 234
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	213, 234
ErhI	CCWWGG	2 cut(s)	213, 234
FaeI	CATG	4 cut(s)	217, 238, 442, 525
FatI	CATG	4 cut(s)	213, 234, 438, 521
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	15, 293, 296, 568
Fsp4HI	GCNGC	4 cut(s)	15, 293, 296, 568
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	15, 293, 296, 568
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	3 cut(s)	5, 114, 498
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	217, 238, 442, 525
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	2 cut(s)	150, 581
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	5, 114, 498
Hpy188I	TCNGA	2 cut(s)	11, 171
Hpy188III	TCNNGA	3 cut(s)	188, 439, 577
HpyAV	CCTTC	3 cut(s)	91, 369, 442
HpyCH4III	ACNGT	2 cut(s)	278, 482
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	217, 238, 442, 525
HspAI	GCGC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	497
KroNI	GCCGGC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	184, 412, 556
LmnI	GCTCC	2 cut(s)	451, 539
LpnPI	CCDG	9 cut(s)	18, 33, 89, 116, 127, 289, 331, 511, 590
Lsp1109I	GCAGC	3 cut(s)	282, 304, 579
MalI	GATC	3 cut(s)	186, 414, 558
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	184, 412, 556
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	412
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	249, 281, 353
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	34, 42, 45
Mox20I	TGGCCA	1 cut(s)	102
MroNI	GCCGGC	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	92, 225, 270
MslI	CAYNNNNRTG	2 cut(s)	330, 437
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	3 cut(s)	5, 114, 498
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	29
NaeI	GCCGGC	1 cut(s)	499
NcoI	CCATGG	2 cut(s)	213, 234
NdeII	GATC	3 cut(s)	184, 412, 556
NgoMIV	GCCGGC	1 cut(s)	497
NlaIII	CATG	4 cut(s)	217, 238, 442, 525
NlaIV	GGNNCC	2 cut(s)	211, 535
NmeAIII	GCCGAG	1 cut(s)	407
PagI	TCATGA	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	16, 294, 297, 569
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	211, 535
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	330, 437
SaqAI	TTAA	3 cut(s)	92, 225, 270
SatI	GCNGC	4 cut(s)	15, 293, 296, 568
Sau3AI	GATC	3 cut(s)	184, 412, 556
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	26, 52, 154, 297, 585, 591
SfcI	CTRYAG	2 cut(s)	137, 492
SinI	GGWCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	330, 437
SmlI	CTYRAG	2 cut(s)	188, 584
SmoI	CTYRAG	2 cut(s)	188, 584
Sse9I	AATT	3 cut(s)	249, 281, 353
SsiI	CCGC	5 cut(s)	14, 27, 60, 77, 298
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	213, 234
TaaI	ACNGT	2 cut(s)	278, 482
TaqI	TCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	249, 281, 353
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	92, 225, 270
Tru9I	TTAA	3 cut(s)	92, 225, 270
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	3 cut(s)	292, 295, 567
TspDTI	ATGAA	2 cut(s)	256, 427
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.