Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008067.1

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Forward (+)

38259 .. 40384

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008067.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggtggtatggtgtattgaattggagtcccttgctcagatatgccggtcagagcggcagagacctccgcgcctcctcaacaccattcagggcttctccggtactcaaaatgtttcgagtctgcagaaagaagaagcttggagagtaaatgttcggatacaagggtgtgatcttgagaatggttatctgtgtggaaccatggaagcacttaatgttcccatggctgacacaccagtcgtcaccttttgggaaggggagattgttgacaccaagaattatactttcttcactgagaagtgggaagcaacacacgatgatgatataaggcactggaccaaatttccttctttttctgctcttttgagccgagtggaagttgatggtggcaaatcattagatctcagcaactataaatacatattcatgagatggaaggagcaatactttgtgaaagttggcacagactgtggtttgactatagcctgcttttactatgtttgtttctcatgtagtgatggctccatcaacggcttttattatgatcctaatagcagcccgttccagaagcttgagctgaaatccacaaatgagggaagattaggattcagtttttcgtcctacgaactgcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

210

Amino Acids

24.22

Weight (kDa)

5.05

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	55, 68
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	3 cut(s)	137, 568, 574
AluI	AGCT	3 cut(s)	137, 568, 574
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	4 cut(s)	374, 423, 509, 530
BceAI	ACGGC	1 cut(s)	544
BciVI	GTATCC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	122, 477
BfuI	GTATCC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	2 cut(s)	56, 553
BlsI	GCNGC	2 cut(s)	57, 554
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	196, 520
BpuEI	CTTGAG	2 cut(s)	194, 590
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	198, 219
BsaWI	WCCGGW	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	233, 335
BseDI	CCNNGG	2 cut(s)	198, 219
BseMII	CTCAG	3 cut(s)	50, 282, 415
BseNI	ACTGG	2 cut(s)	233, 335
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	46, 99
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	169, 397, 541
Bsp19I	CCATGG	2 cut(s)	198, 219
BspACI	CCGC	2 cut(s)	55, 68
BspCNI	CTCAG	3 cut(s)	49, 283, 414
BspFNI	CGCG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	196, 520
BspMAI	CTGCAG	1 cut(s)	126
BspPI	GGATC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	233, 335
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	198, 219
BssMI	GATC	3 cut(s)	169, 397, 541
BssT1I	CCWWGG	2 cut(s)	198, 219
Bst4CI	ACNGT	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	36, 291, 401
BstDSI	CCRYGG	2 cut(s)	198, 219
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	172, 400, 544
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	169, 397, 541
BstSFI	CTRYAG	2 cut(s)	122, 477
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	198, 219
BtsIMutI	CAGTG	2 cut(s)	288, 328
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	4 cut(s)	199, 220, 424, 507
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	3 cut(s)	36, 291, 401
DpnI	GATC	3 cut(s)	171, 399, 543
DpnII	GATC	3 cut(s)	169, 397, 541
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	198, 219
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	198, 219
ErhI	CCWWGG	2 cut(s)	198, 219
FaeI	CATG	4 cut(s)	202, 223, 427, 510
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	4 cut(s)	198, 219, 423, 506
Fnu4HI	GCNGC	2 cut(s)	56, 553
Fsp4HI	GCNGC	2 cut(s)	56, 553
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	56, 553
HapII	CCGG	2 cut(s)	46, 99
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	202, 223, 427, 510
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	135, 566
HinfI	GANTC	3 cut(s)	26, 118, 603
HpaII	CCGG	2 cut(s)	46, 99
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	39, 52, 156
Hpy188III	TCNNGA	3 cut(s)	173, 424, 562
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	245, 354, 427
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	1 cut(s)	124
HpyF3I	CTNAG	3 cut(s)	36, 291, 401
Hsp92II	CATG	4 cut(s)	202, 223, 427, 510
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	169, 397, 541
LmnI	GCTCC	2 cut(s)	436, 524
LpnPI	CCDG	7 cut(s)	59, 74, 112, 246, 316, 496, 575
Lsp1109I	GCAGC	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	171, 399, 543
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	3 cut(s)	169, 397, 541
MboII	GAAGA	3 cut(s)	143, 277, 606
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	3 cut(s)	20, 274, 338
MlyI	GAGTC	2 cut(s)	35, 127
MnlI	CCTC	4 cut(s)	75, 83, 86, 583
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	2 cut(s)	315, 422
MspI	CCGG	2 cut(s)	46, 99
MvnI	CGCG	1 cut(s)	70
NcoI	CCATGG	2 cut(s)	198, 219
NdeII	GATC	3 cut(s)	169, 397, 541
NlaIII	CATG	4 cut(s)	202, 223, 427, 510
NlaIV	GGNNCC	2 cut(s)	196, 520
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	603
PkrI	GCNGC	2 cut(s)	57, 554
PleI	GAGTC	2 cut(s)	34, 126
PpsI	GAGTC	2 cut(s)	34, 126
PspN4I	GGNNCC	2 cut(s)	196, 520
PspPI	GGNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	315, 422
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	56, 553
Sau3AI	GATC	3 cut(s)	169, 397, 541
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	35, 127
SetI	ASST	5 cut(s)	67, 139, 245, 570, 576
SfcI	CTRYAG	2 cut(s)	122, 477
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	315, 422
SmlI	CTYRAG	2 cut(s)	173, 569
SmoI	CTYRAG	2 cut(s)	173, 569
Sse9I	AATT	3 cut(s)	20, 274, 338
SsiI	CCGC	2 cut(s)	55, 68
StyI	CCWWGG	2 cut(s)	198, 219
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	20, 274, 338
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	295, 335
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	295, 335
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.