Rroxscaffold_6G00414870

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005099
Physical Location & Seq
Reverse (-)
37144855 .. 37148258
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414870.1

Sequence Viewer

Length: 525 bp
ATGATTCTGTGGCAGGGCTTCTCCGGTACTCAGAATGTTTCGAGTCTGCAAAAAGATGAAGCTTGGAGAGTAAATGTTCGGATTCAAGGGTGTGATCTTGAGAATGGTTATCTGTGTGGAACCATGGAAGCACCTAATGTTCCCATGGCTGACACACTAGTCATCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACGAGATGATGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTATTGAGTCAAGTGGAAGTTGATGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATTCATGAGATGGAAGGAGCAATACTTTGTGAATGTTGGCACAGACTGTGGTTTGACTATAGCCGGCTTTTACTATGTGTGTTTCTCATGTAGTGATGGCTCCATCAACGGCTTCTATTATGATCCTAATAGCAGCCCGTTCCAGAAGCTTCAGCTGAAATCCAGAAATGAGGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

174

Amino Acids

20.0

Weight (kDa)

4.68

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 6 - 168 4.3e-50 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 1 cut(s) 86
AhlI ACTAGT 1 cut(s) 157
AluBI AGCT 3 cut(s) 62, 493, 499
AluI AGCT 3 cut(s) 62, 493, 499
AlwI GGATC 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BauI CACGAG 1 cut(s) 234
BbvI GCAGC 1 cut(s) 489
BccI CCATC 4 cut(s) 299, 348, 434, 455
BceAI ACGGC 1 cut(s) 469
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 402
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 121, 445
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 123, 144
BsaWI WCCGGW 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 123, 144
BseMII CTCAG 3 cut(s) 44, 207, 340
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 489
BsiSI CCGG 2 cut(s) 24, 408
Bsp143I GATC 3 cut(s) 94, 322, 466
Bsp19I CCATGG 2 cut(s) 123, 144
BspCNI CTCAG 3 cut(s) 43, 208, 339
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 121, 445
BspPI GGATC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 123, 144
BssMI GATC 3 cut(s) 94, 322, 466
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 123, 144
Bst2BI CACGAG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 30, 216, 326
BstDSI CCRYGG 2 cut(s) 123, 144
BstKTI GATC 3 cut(s) 97, 325, 469
BstMBI GATC 3 cut(s) 94, 322, 466
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtgI CCRYGG 2 cut(s) 123, 144
BtsIMutI CAGTG 2 cut(s) 213, 253
Cac8I GCNNGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 27
CviAII CATG 4 cut(s) 124, 145, 349, 432
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 3 cut(s) 30, 216, 326
DpnI GATC 3 cut(s) 96, 324, 468
DpnII GATC 3 cut(s) 94, 322, 466
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 123, 144
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 123, 144
ErhI CCWWGG 2 cut(s) 123, 144
FaeI CATG 4 cut(s) 127, 148, 352, 435
FatI CATG 4 cut(s) 123, 144, 348, 431
Fnu4HI GCNGC 1 cut(s) 478
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 478
HapII CCGG 2 cut(s) 24, 408
Hin1II CATG 4 cut(s) 127, 148, 352, 435
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 60, 491
HinfI GANTC 4 cut(s) 4, 43, 82, 289
HpaII CCGG 2 cut(s) 24, 408
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 33, 81
Hpy188III TCNNGA 4 cut(s) 98, 349, 487, 507
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 170, 279, 352
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 49
HpyF3I CTNAG 3 cut(s) 30, 216, 326
Hsp92II CATG 4 cut(s) 127, 148, 352, 435
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 94, 322, 466
LmnI GCTCC 2 cut(s) 361, 449
LpnPI CCDG 5 cut(s) 37, 241, 421, 500, 520
Lsp1109I GCAGC 1 cut(s) 489
MaeI CTAG 1 cut(s) 158
MalI GATC 3 cut(s) 96, 324, 468
MboI GATC 3 cut(s) 94, 322, 466
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 199, 263
MlyI GAGTC 2 cut(s) 52, 298
MnlI CCTC 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 2 cut(s) 24, 408
NaeI GCCGGC 1 cut(s) 409
NcoI CCATGG 2 cut(s) 123, 144
NdeII GATC 3 cut(s) 94, 322, 466
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 4 cut(s) 127, 148, 352, 435
NlaIV GGNNCC 2 cut(s) 121, 445
PagI TCATGA 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 4, 82
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 2 cut(s) 51, 297
PpsI GAGTC 2 cut(s) 51, 297
PspN4I GGNNCC 2 cut(s) 121, 445
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 347
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 3 cut(s) 94, 322, 466
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 2 cut(s) 52, 298
SetI ASST 5 cut(s) 64, 136, 170, 495, 501
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 2 cut(s) 199, 263
SspMI CTAG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 123, 144
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 199, 263
TfiI GAWTC 2 cut(s) 4, 82
TscAI CASTG 2 cut(s) 220, 260
TseI GCWGC 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 72, 337
TspRI CASTG 2 cut(s) 220, 260
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 263
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.