Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009386.1

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Reverse (-)

7789 .. 10518

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009386.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggaagcacttaatgttcccatggctgacacaccagtcgtcaccttttgggaaggggagattgttgacaccaagaattatactttcttcactgagaagtgggaagcaacacacgacggtgatataaggcactggaccaaatttccttctttttctgctcttttgagccgagtggaagttgatggtggcaaatcattagatctcagcaactatccatacatattcatgagacggaagaagcaatacttcgtgaatgttggcacagactccggtttgactatagctggcttttaccatgtgtgtttctcatgcagtgatggctctatcaacggcttctattatgatcctaatagcagaaggatttttgctcaagttctgcagctattcaatccttggtccaagctgctcaagatgtcgaacctaggccaagctgcatctatagggatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

6.27

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	284, 382, 403, 431
AluI	AGCT	4 cut(s)	284, 382, 403, 431
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	3 cut(s)	379, 403, 431
ApoI	RAATTY	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	135, 396
AsuHPI	GGTGA	2 cut(s)	34, 131
AvaII	GGWCC	2 cut(s)	135, 396
AvrII	CCTAGG	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbvI	GCAGC	3 cut(s)	390, 391, 418
BccI	CCATC	2 cut(s)	176, 311
BceAI	ACGGC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	422, 448
BfmI	CTRYAG	3 cut(s)	279, 377, 438
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	3 cut(s)	380, 404, 432
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	3 cut(s)	381, 405, 433
Bme18I	GGWCC	2 cut(s)	135, 396
BmgT120I	GGNCC	2 cut(s)	135, 396
BmsI	GCATC	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	354, 392
BsaJI	CCNNGG	3 cut(s)	21, 392, 421
BsaWI	WCCGGW	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	35, 137
BseDI	CCNNGG	3 cut(s)	21, 392, 421
BseMII	CTCAG	2 cut(s)	84, 217
BseNI	ACTGG	2 cut(s)	35, 137
BseXI	GCAGC	3 cut(s)	390, 391, 418
BshFI	GGCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	199, 343, 444
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	85, 216
BspHI	TCATGA	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	35, 137
BssECI	CCNNGG	3 cut(s)	21, 392, 421
BssMI	GATC	3 cut(s)	199, 343, 444
BssT1I	CCWWGG	3 cut(s)	21, 392, 421
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	93, 203
BstDSI	CCRYGG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	202, 346, 447
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	199, 343, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstSFI	CTRYAG	3 cut(s)	279, 377, 438
BstV1I	GCAGC	3 cut(s)	390, 391, 418
BstX2I	RGATCY	2 cut(s)	199, 444
BstYI	RGATCY	2 cut(s)	199, 444
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	90, 130, 319
Cac8I	GCNNGC	1 cut(s)	286
CciI	TCATGA	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	135, 396
CviAII	CATG	4 cut(s)	22, 226, 296, 309
DdeI	CTNAG	2 cut(s)	93, 203
DpnI	GATC	3 cut(s)	201, 345, 446
DpnII	GATC	3 cut(s)	199, 343, 444
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco130I	CCWWGG	3 cut(s)	21, 392, 421
Eco47I	GGWCC	2 cut(s)	135, 396
EcoT14I	CCWWGG	3 cut(s)	21, 392, 421
ErhI	CCWWGG	3 cut(s)	21, 392, 421
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	4 cut(s)	25, 229, 299, 312
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	4 cut(s)	21, 225, 295, 308
Fnu4HI	GCNGC	3 cut(s)	380, 404, 432
Fsp4HI	GCNGC	3 cut(s)	380, 404, 432
FspBI	CTAG	2 cut(s)	422, 448
GluI	GCNGC	3 cut(s)	380, 404, 432
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	4 cut(s)	25, 229, 299, 312
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	34, 131
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	226, 250, 409
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	47, 156, 351
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	312, 379, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	93, 203
Hsp92II	CATG	4 cut(s)	25, 229, 299, 312
Kzo9I	GATC	3 cut(s)	199, 343, 444
LpnPI	CCDG	4 cut(s)	48, 118, 270, 283
Lsp1109I	GCAGC	3 cut(s)	390, 391, 418
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	2 cut(s)	422, 448
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	201, 345, 446
MboI	GATC	3 cut(s)	199, 343, 444
MboII	GAAGA	2 cut(s)	79, 247
MflI	RGATCY	2 cut(s)	199, 444
MluCI	AATT	2 cut(s)	76, 140
MlyI	GAGTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	2 cut(s)	117, 224
MspI	CCGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	199, 343, 444
NlaIII	CATG	4 cut(s)	25, 229, 299, 312
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	117
PagI	TCATGA	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	381, 405, 433
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PspPI	GGNCC	2 cut(s)	135, 396
PstI	CTGCAG	1 cut(s)	381
PsuI	RGATCY	2 cut(s)	199, 444
RseI	CAYNNNNRTG	2 cut(s)	117, 224
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	380, 404, 432
Sau3AI	GATC	3 cut(s)	199, 343, 444
Sau96I	GGNCC	2 cut(s)	135, 396
SchI	GAGTC	1 cut(s)	260
SetI	ASST	6 cut(s)	47, 286, 384, 405, 423, 433
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	3 cut(s)	279, 377, 438
SinI	GGWCC	2 cut(s)	135, 396
SmiMI	CAYNNNNRTG	2 cut(s)	117, 224
SmlI	CTYRAG	2 cut(s)	369, 407
SmoI	CTYRAG	2 cut(s)	369, 407
Sse9I	AATT	2 cut(s)	76, 140
SspMI	CTAG	2 cut(s)	422, 448
StyI	CCWWGG	3 cut(s)	21, 392, 421
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	76, 140
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	97, 137, 319
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	3 cut(s)	379, 403, 431
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	3 cut(s)	97, 137, 319
VpaK11BI	GGWCC	2 cut(s)	135, 396
XapI	RAATTY	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.