Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Reverse (-)

25052590 .. 25054833

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G259400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCGGTGAGAGTGGCAGAGAGCTCCGCCCCTTCTCAACTTTCAGGTTCAAATTGTGGACAGACCTCTCCCTCAGCTTGCTCACTTTTAAGCGTTGGACAGGCCTTCTCCGGCACTCAGAATGTGTCTAGTCTGCAAAAGGACGAAGCTTGGAGAGTAAATGTTCGTATACAGGGCTGTGACCTTGAACATGGTTATCTATGTGGAACCATGGAAGCCCTTAATGTTCCTATGGCAGACACACCGGTAGTTACCTTTTGGGAAGGAGAGATCGTTGACACCAAGAATTATACTTTCTTCACTGGAAAATGGGAAGCAACACCAGAGGATGATATAAGGCACTGGACCAAGTTTCCTTCTTTTTCGGCTCTACAGAGCCATGTGGAAGTTGATGGCGGAAAATCATTAGATCTGAGTAACTATCAATACATATTCATGAGATGGAAAGAGCAATACTTTGTGAATGTTGGCACAGACTGTGGGCTGACTATAGCTGGCTTTTACTATGTCTGTTTCTCTTGTAGTGATGGCTCCATCAATGGTTTCTATTACGATCCTAACAGCAGCCCATTTCAGAAGCTTGAGCTGAAATCCACTAACGAGGGAAGACAAGGTTTCAGCTTTTCATCATACGAGCTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

215

Amino Acids

23.85

Weight (kDa)

4.76

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	2 cut(s)	27, 396
AclWI	GGATC	1 cut(s)	548
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	51, 188
AluBI	AGCT	8 cut(s)	24, 77, 149, 494, 580, 586, 621, 637
AluI	AGCT	8 cut(s)	24, 77, 149, 494, 580, 586, 621, 637
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	4 cut(s)	386, 435, 521, 542
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	371, 489
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	208, 532
BpiI	GAAGAC	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse118I	RCCGGY	2 cut(s)	4, 244
Bse1I	ACTGG	2 cut(s)	307, 347
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	87, 131, 404, 629
BseNI	ACTGG	2 cut(s)	307, 347
BseXI	GCAGC	1 cut(s)	576
BshFI	GGCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	5, 111, 245
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	270, 409, 553
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	27, 396
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	4 cut(s)	86, 130, 405, 630
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	208, 532
BspPI	GGATC	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	4, 244
BsrI	ACTGG	2 cut(s)	307, 347
BssAI	RCCGGY	2 cut(s)	4, 244
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	270, 409, 553
BssNAI	GTATAC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	210
Bst1107I	GTATAC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	79, 496
BstDEI	CTNAG	4 cut(s)	73, 117, 413, 638
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	273, 412, 556
BstMBI	GATC	3 cut(s)	270, 409, 553
BstSFI	CTRYAG	2 cut(s)	371, 489
BstV1I	GCAGC	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	300, 340
Cac8I	GCNNGC	2 cut(s)	79, 496
CciI	TCATGA	1 cut(s)	435
Cfr10I	RCCGGY	2 cut(s)	4, 244
Cfr13I	GGNCC	1 cut(s)	345
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	4 cut(s)	191, 211, 380, 436
DdeI	CTNAG	4 cut(s)	73, 117, 413, 638
DpnI	GATC	3 cut(s)	272, 411, 555
DpnII	GATC	3 cut(s)	270, 409, 553
EciI	GGCGGA	2 cut(s)	16, 411
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	194, 214, 383, 439
FatI	CATG	4 cut(s)	190, 210, 379, 435
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	565
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	3 cut(s)	5, 111, 245
Hin1II	CATG	4 cut(s)	194, 214, 383, 439
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	147, 578
HpaII	CCGG	3 cut(s)	5, 111, 245
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	3 cut(s)	59, 170, 277
Hpy188I	TCNGA	3 cut(s)	120, 414, 576
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	3 cut(s)	59, 170, 277
HpyAV	CCTTC	4 cut(s)	42, 115, 257, 366
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	136
HpyF3I	CTNAG	4 cut(s)	73, 117, 413, 638
Hsp92II	CATG	4 cut(s)	194, 214, 383, 439
Kzo9I	GATC	3 cut(s)	270, 409, 553
LmnI	GCTCC	2 cut(s)	29, 536
Lsp1109I	GCAGC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	179, 250, 416
MalI	GATC	3 cut(s)	272, 411, 555
MboI	GATC	3 cut(s)	270, 409, 553
MboII	GAAGA	2 cut(s)	289, 618
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	2 cut(s)	52, 286
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	76, 82, 319, 595
MseI	TTAA	2 cut(s)	89, 222
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	3 cut(s)	5, 111, 245
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	270, 409, 553
NlaIII	CATG	4 cut(s)	194, 214, 383, 439
NlaIV	GGNNCC	2 cut(s)	208, 532
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	104
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	208, 532
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	89, 222
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	3 cut(s)	270, 409, 553
Sau96I	GGNCC	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	26
SfcI	CTRYAG	2 cut(s)	371, 489
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	52, 286
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	27, 396
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	479
TasI	AATT	2 cut(s)	52, 286
Tru1I	TTAA	2 cut(s)	89, 222
Tru9I	TTAA	2 cut(s)	89, 222
TscAI	CASTG	2 cut(s)	307, 347
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	424, 615
TspRI	CASTG	2 cut(s)	307, 347
VpaK11BI	GGWCC	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.