RchiOBHm_Chr3g0465971

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005099
Physical Location & Seq
Forward (+)
12544164 .. 12546357
2194 bp
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UTR
Exon/CDS
Intron
PRQ43208

Sequence Viewer

Length: 402 bp
ATGGAAGCAAATAATGTTCCCATGGCTGACACACCGGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTTTTCACTAAGAAGTGGGAAGCAACACGAGACGATGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTATTGAGCCTAGTGGAAGTTGATGGTGGCAAATCATTAGATCTCAGCAACTATCCATACATATTCATGAGATGGAAGGAGCAATACTTAGTGCATGTTGGCACAGACTGTGGTTTGACTATAGCCGGCTTTTACTATGTGTGTTTCTCATGTAGTGATGGCTCCATTAACAGCTTCTATTATGATCCTAATAGCAGCCCGTTCCAGAAGCTTGAGCTGAAATCCACAAATGGGGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

133

Amino Acids

15.26

Weight (kDa)

4.89

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 1 - 128 8.5e-39 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 333, 370, 376
AluI AGCT 3 cut(s) 333, 370, 376
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 135
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 366
BccI CCATC 3 cut(s) 176, 225, 311
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 2 cut(s) 34, 284
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 35, 285
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 199, 343
Bsp19I CCATGG 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 338
BsrFI RCCGGY 2 cut(s) 34, 284
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 2 cut(s) 34, 284
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 199, 343
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 93, 203, 247
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 2 cut(s) 202, 346
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 199, 343
BstMCI CGRYCG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 225
Cfr10I RCCGGY 2 cut(s) 34, 284
Cfr13I GGNCC 1 cut(s) 135
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 4 cut(s) 22, 226, 254, 309
CviJI RGCY 9 cut(s) 26, 168, 284, 288, 321, 333, 357, 370, 376
CviKI_1 RGCY 9 cut(s) 26, 168, 284, 288, 321, 333, 357, 370, 376
DdeI CTNAG 3 cut(s) 93, 203, 247
DpnI GATC 2 cut(s) 201, 345
DpnII GATC 2 cut(s) 199, 343
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 4 cut(s) 25, 229, 257, 312
FatI CATG 4 cut(s) 21, 225, 253, 308
Fnu4HI GCNGC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 355
HapII CCGG 2 cut(s) 35, 285
Hin1II CATG 4 cut(s) 25, 229, 257, 312
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 2 cut(s) 35, 285
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 226, 364
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 47, 156, 229
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 3 cut(s) 93, 203, 247
Hsp92II CATG 4 cut(s) 25, 229, 257, 312
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 199, 343
LmnI GCTCC 2 cut(s) 238, 326
LpnPI CCDG 4 cut(s) 48, 118, 298, 377
Lsp1109I GCAGC 1 cut(s) 366
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 201, 345
MboI GATC 2 cut(s) 199, 343
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 76, 140
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 2 cut(s) 35, 285
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 21
NdeII GATC 2 cut(s) 199, 343
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 4 cut(s) 25, 229, 257, 312
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 257
PagI TCATGA 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 199, 343
Sau96I GGNCC 1 cut(s) 135
SetI ASST 4 cut(s) 47, 335, 372, 378
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 76, 140
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 269
TasI AATT 2 cut(s) 76, 140
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 257
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.