Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Reverse (-)

15092960 .. 15095002

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12120.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCGGTGAGAGTGGCGGAAGCCTCCGCGCCTTCTCAACTCTCAGGTTCAAATGGTGGACAGACGGCTCCTCCAGCCTGCACACTTTTAAGCGTTGGACAGGCCTTCTCCGGTACGCAGAATGTTTCTAGTATGCAGAAAGATGAAGCGTGGAGAGTGAATGTTCGGATACAGGGGTGTGACCTTGAACATGGTTATCTATGTGGAACCATGGAAGCTCTTAATGTTCCTATGGCAGACACACCGGTAGTTACCTTTTGGGAAGGAGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGGAAAATGGGAGGCAACGCCAGACGATGATATAAGGCACTGGACCAAGTTTCCTTCTTTTTCTGCTCTGCTGAGCCAAGTGGAAGTTGATGGTGGCAAATCATTAGATCTGAGTAATTATCCGTACATATTCATGAGATGGAAAGAGCAATATTTTGTGAATGTTGGCACAGACTGTGGGCTAACAATAGCTGGCTTTTACTATGTCTGTTTCTCTTGTAGCGATGGCTCCATCAATGGCTTCTATTATGATCCTAACAGCAGCCCTTTTCAGAAGCTTGAGCTGAAATCTACCAACGAGGGACGATCAGGTTTCAGCTTTTCATCATATGAACTGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

215

Amino Acids

23.71

Weight (kDa)

4.65

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	17, 27
AclWI	GGATC	1 cut(s)	548
AfaI	GTAC	2 cut(s)	115, 428
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	51, 188
AluBI	AGCT	5 cut(s)	218, 494, 580, 586, 621
AluI	AGCT	5 cut(s)	218, 494, 580, 586, 621
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	4 cut(s)	386, 435, 521, 542
BceAI	ACGGC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	565
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	3 cut(s)	69, 208, 532
BpmI	CTGGAG	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	110, 244
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 258, 288
Bse118I	RCCGGY	2 cut(s)	4, 244
Bse1I	ACTGG	2 cut(s)	307, 347
BseDI	CCNNGG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	57, 365, 404
BseNI	ACTGG	2 cut(s)	307, 347
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	5, 111, 245
BslFI	GGGAC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	409, 553, 608
Bsp1720I	GCTNAGC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	17, 27
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	3 cut(s)	56, 366, 405
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	69, 208, 532
BspPI	GGATC	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	4, 244
BsrI	ACTGG	2 cut(s)	307, 347
BssAI	RCCGGY	2 cut(s)	4, 244
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	409, 553, 608
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	79, 496
BstDEI	CTNAG	3 cut(s)	43, 374, 413
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	412, 556, 611
BstMBI	GATC	3 cut(s)	409, 553, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	300, 340
Cac8I	GCNNGC	2 cut(s)	79, 496
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	2 cut(s)	4, 244
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	114, 427
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	3 cut(s)	191, 211, 436
CviQI	GTAC	2 cut(s)	114, 427
DdeI	CTNAG	3 cut(s)	43, 374, 413
DpnI	GATC	3 cut(s)	411, 555, 610
DpnII	GATC	3 cut(s)	409, 553, 608
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	194, 214, 439
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	3 cut(s)	190, 210, 435
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	3 cut(s)	5, 111, 245
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	194, 214, 439
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	578
HpaII	CCGG	3 cut(s)	5, 111, 245
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	59, 277
Hpy188I	TCNGA	3 cut(s)	168, 414, 576
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	2 cut(s)	59, 277
HpyAV	CCTTC	4 cut(s)	42, 115, 257, 366
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	81, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	43, 374, 413
Hsp92II	CATG	3 cut(s)	194, 214, 439
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	409, 553, 608
LmnI	GCTCC	2 cut(s)	73, 536
Lsp1109I	GCAGC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	179, 250
MalI	GATC	3 cut(s)	411, 555, 610
MboI	GATC	3 cut(s)	409, 553, 608
MboII	GAAGA	1 cut(s)	289
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	2 cut(s)	286, 418
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	34, 81, 307, 595
MseI	TTAA	2 cut(s)	89, 222
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	3 cut(s)	5, 111, 245
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	210
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	3 cut(s)	409, 553, 608
NlaIII	CATG	3 cut(s)	194, 214, 439
NlaIV	GGNNCC	3 cut(s)	69, 208, 532
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	104
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	566
PspN4I	GGNNCC	3 cut(s)	69, 208, 532
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	115, 428
RsaNI	GTAC	2 cut(s)	114, 427
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	89, 222
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	3 cut(s)	409, 553, 608
Sau96I	GGNCC	1 cut(s)	345
SetI	ASST	9 cut(s)	49, 186, 220, 257, 496, 582, 588, 616, 623
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	286, 418
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	17, 27
SspI	AATATT	1 cut(s)	455
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	479
TasI	AATT	2 cut(s)	286, 418
Tru1I	TTAA	2 cut(s)	89, 222
Tru9I	TTAA	2 cut(s)	89, 222
TscAI	CASTG	2 cut(s)	307, 347
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	159, 424, 615
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	307, 347
VpaK11BI	GGWCC	1 cut(s)	345
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.