Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005099

Physical Location & Seq

Genomic Coordinates Reverse (-)

6199090 .. 6201552

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCTCGAAAGCCTCGAAGAACCAAAGTCTTCAACTTCAGTAAATGCCTGACTCCTGGTTTGGTCCCCATGCCGGAAACGCCTCCGCCGTCTCCGCCGCGTGAAGAATTGATAGAAGAAGTTGGAGAGAATGACCCTAATGTAACTGATTCAATTGTGAGCAATGAAATCTTCACCAAGGGAGCACTGGTTGAGGTTAGCAGTGATGAAGAAGGATTCCATGGTTCTTGGTTTGCTGCCACTGTAGTGAAATCTGTGGGGAGAGACAAGTTCCTTATTGAGTACAAGTGCTTGAGGACAGAGGATGATTTGGCATTTTTGAGAGAAGAGGTTGATAACATGCACATACGACCTCATCCACCAGAAAATGTTGTTGATCATTTCAAGCAACTTGACGAGGTTGATGCTTTGTACAATGATGGGTGGTGGGTTGGTGTTATTTCTAAGGTTCTAAGAGGTTCAAGGTACATAGTCTACTTCAAGGAAACCTGTGAGGAACTTGAATATCAGCACTCTGAGTTAAGGCTTCATCAGGACTGGATTGATGGCAAATGGGTTATCCCATCTCGGGAGTTAAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vac_ImportDeg

Protein Analysis

194

Amino Acids

22.5

Weight (kDa)

5.05

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	61 - 121	3.9e-20	Agenet domain
Agenet	PF05641	132 - 189	9.5e-06	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37680 AT2G37680
fragaria_vesca	FvH4_6g13220
malus_domestica	MD04G1133400.v1.1 MD12G1146200.v1.1
prunus_persica	Prupe.6G259400_v2.0.a1 Prupe.6G259400_v2.0.a1
pyrus_communis	pycom04g12120
rosa_chinensis	RchiOBHm_Chr3g0465901 RchiOBHm_Chr3g0465921 RchiOBHm_Chr3g0465971 RchiOBHm_Chr3g0466001 RchiOBHm_Chr3g0466041
rosa_laevigata	RLG00000024607
rosa_multiflora	Rmu_sc0008067.1_g000006 Rmu_sc0008430.1_g000004 Rmu_sc0009386.1_g000003
rosa_roxburghii	Rroxscaffold_6G00414840 Rroxscaffold_6G00414870
rosa_rugosa	Rorug03G0079000 Rorug03G0079100
rosa_samantha	Rh3BG145400 Rh3BG146200 Rh3CG147100 Rh3DG146300 Rh3DG147100
rosa_wichuraiana	Rw3G011740 Rw3G011760 Rw3G011800 Rw3G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	86, 95, 98
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	3 cut(s)	284, 413, 467
AfiI	CCNNNNNNNGG	2 cut(s)	73, 568
AgsI	TTSAA	6 cut(s)	34, 153, 385, 462, 481, 503
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	96, 258
Ama87I	CYCGRG	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	413, 539, 571
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	96, 258
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	98, 237
BlsI	GCNGC	2 cut(s)	99, 238
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	177, 220
BsaXI	ACNNNNNCTCC	3 cut(s)	174, 204, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 568
Bse1I	ACTGG	2 cut(s)	192, 542
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	177, 220
BseGI	GGATG	2 cut(s)	310, 355
BseLI	CCNNNNNNNGG	2 cut(s)	73, 568
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	192, 542
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	73, 568
BsmAI	GTCTC	2 cut(s)	96, 258
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	376
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	3 cut(s)	86, 95, 98
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	192, 542
BssECI	CCNNGG	2 cut(s)	177, 220
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	177, 220
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	321
BstAUI	TGTACA	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	444, 452, 516
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	310, 355
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	96, 258
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 79, 94
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	310, 355
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	185, 208, 240
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	283, 412, 466
CviAII	CATG	3 cut(s)	70, 221, 340
CviJI	RGCY	2 cut(s)	13, 526
CviKI_1	RGCY	2 cut(s)	13, 526
CviQI	GTAC	3 cut(s)	283, 412, 466
DdeI	CTNAG	3 cut(s)	444, 452, 516
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	2 cut(s)	75, 84
Eco130I	CCWWGG	2 cut(s)	177, 220
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	177, 220
ErhI	CCWWGG	2 cut(s)	177, 220
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	73, 224, 343
FaiI	YATR	6 cut(s)	71, 222, 341, 347, 470, 583
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	69, 220, 339
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	98, 237
FokI	GGATG	2 cut(s)	317, 342
Fsp4HI	GCNGC	2 cut(s)	98, 237
GluI	GCNGC	2 cut(s)	98, 237
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	3 cut(s)	73, 224, 343
HinfI	GANTC	3 cut(s)	52, 149, 216
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	2 cut(s)	533, 569
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 79, 94
HpyF3I	CTNAG	3 cut(s)	444, 452, 516
Hsp92II	CATG	3 cut(s)	73, 224, 343
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	9 cut(s)	42, 62, 69, 87, 173, 375, 502, 518, 523
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	7 cut(s)	22, 30, 116, 128, 163, 221, 338
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	107, 153
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	103
MseI	TTAA	2 cut(s)	521, 575
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	10, 79, 94
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	73, 224, 343
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 86
PfeI	GAWTC	2 cut(s)	149, 216
PkrI	GCNGC	2 cut(s)	99, 238
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	3 cut(s)	284, 413, 467
RsaNI	GTAC	3 cut(s)	283, 412, 466
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	521, 575
SatI	GCNGC	2 cut(s)	98, 237
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	198, 333, 355, 402, 450, 460, 467, 491
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
Sse9I	AATT	2 cut(s)	107, 153
SsiI	CCGC	3 cut(s)	86, 95, 98
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	177, 220
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	7, 16
TasI	AATT	2 cut(s)	107, 153
TatI	WGTACW	2 cut(s)	282, 411
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	149, 216
Tru1I	TTAA	2 cut(s)	521, 575
Tru9I	TTAA	2 cut(s)	521, 575
TscAI	CASTG	3 cut(s)	192, 208, 247
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	180, 222, 518
TspRI	CASTG	3 cut(s)	192, 208, 247
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.