RchiOBHm_Chr3g0465901

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005099
Physical Location & Seq
Forward (+)
12501466 .. 12503109
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43201

Sequence Viewer

Length: 474 bp
ATGATTATCTATTCTGGGAAATGGGGAATTGAATTGTATCACTGCTGTCTGCAAAAAGATGAAACTTGGAGAGTAAATGTTCGGATACAAGTGTGTGATCTTGAGAATGGTTATCTGTGCCGAACCATGGAAGCACTTAATGTTCCCATGGCTGACACACCAGTCGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACACGATGGTGATATAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTTTTGAGACGGAAGAAGCAATACTTCGTGAATGTTGGCACAGACTCCGGTTTGACTATAGCTGGCTTTTACTATGTGTGTTTCTCATGCAGTGATGGCTCTATCAACGGCTTCTATTATGATCCTAATAGCAGAACGCTATTGATTTCTTCTGTTTATGATGGGGATGTGCTTATGCTTAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

157

Amino Acids

18.24

Weight (kDa)

5.57

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 19 - 140 4.1e-32 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 32
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 160, 257
AvaII GGWCC 1 cut(s) 261
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BccI CCATC 3 cut(s) 236, 374, 440
BceAI ACGGC 1 cut(s) 409
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 286
BfmI CTRYAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 126, 147
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 161, 263
BseDI CCNNGG 2 cut(s) 126, 147
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 161, 263
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 97, 406
Bsp19I CCATGG 2 cut(s) 126, 147
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 401
BsrI ACTGG 2 cut(s) 161, 263
BssECI CCNNGG 2 cut(s) 126, 147
BssMI GATC 2 cut(s) 97, 406
BssT1I CCWWGG 2 cut(s) 126, 147
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 219, 464
BstDSI CCRYGG 2 cut(s) 126, 147
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 2 cut(s) 100, 409
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 97, 406
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 78
BtgI CCRYGG 2 cut(s) 126, 147
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 2 cut(s) 40, 382
BtsIMutI CAGTG 4 cut(s) 40, 216, 256, 382
Cac8I GCNNGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 3 cut(s) 127, 148, 372
CviJI RGCY 5 cut(s) 152, 347, 351, 384, 396
CviKI_1 RGCY 5 cut(s) 152, 347, 351, 384, 396
DdeI CTNAG 2 cut(s) 219, 464
DpnI GATC 2 cut(s) 99, 408
DpnII GATC 2 cut(s) 97, 406
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 126, 147
Eco47I GGWCC 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 126, 147
ErhI CCWWGG 2 cut(s) 126, 147
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 3 cut(s) 130, 151, 375
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 3 cut(s) 126, 147, 371
FokI GGATG 1 cut(s) 464
HapII CCGG 1 cut(s) 333
Hin1II CATG 3 cut(s) 130, 151, 375
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 333
HphI GGTGA 2 cut(s) 160, 257
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 101, 313
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 173, 282
HpyCH4V TGCA 2 cut(s) 52, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 2 cut(s) 219, 464
Hsp92II CATG 3 cut(s) 130, 151, 375
Kzo9I GATC 2 cut(s) 97, 406
LpnPI CCDG 4 cut(s) 174, 244, 333, 346
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 99, 408
MboI GATC 2 cut(s) 97, 406
MboII GAAGA 3 cut(s) 205, 310, 426
MluCI AATT 4 cut(s) 27, 32, 202, 266
MlyI GAGTC 1 cut(s) 323
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 381
NcoI CCATGG 2 cut(s) 126, 147
NdeII GATC 2 cut(s) 97, 406
NlaIII CATG 3 cut(s) 130, 151, 375
NmuCI GTSAC 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 243
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 97, 406
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 323
SetI ASST 2 cut(s) 173, 349
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 27, 32, 202, 266
StyI CCWWGG 2 cut(s) 126, 147
TasI AATT 4 cut(s) 27, 32, 202, 266
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 4 cut(s) 47, 223, 263, 382
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 4 cut(s) 47, 223, 263, 382
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.