AT2G38630

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001828
Physical Location & Seq
Reverse (-)
16153806 .. 16156608
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38630.2

Sequence Viewer

Length: 1404 bp
ATGATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCGTGTAGCGGTAGTAGAAGAGTTATTGCTAAGAAGAGGTCTCGTCCCGATGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCGAGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACTGCTCAAGAGAGATTCCGCAATATGCGTCTCGTGGAGCAATATGATACGCATGATCCTAAAGGATACTGTTTAGTATCATTACCTAACTTGTTGAAACGAAGCAAAGTTATTGAGATTGTTGCTGCTCGTGACATTGTCTTTGCTCTTACTCTATCTGGTGTCTGTGCATCTTTTAGCAGAGAGACGAATAAAAAGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTCGGAGTTTGTTCTACAACAAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTGAAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAGCAGACGCAGGATTTCCTCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTTAATGGGAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTGAAAAACTATGCCTTGCTATATTCGATATCAGACAAAAATGTACAAGAAATTAAGATCAGTCCAGGGATAATGCTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGAAGATGGCACTCTTCTGAAGTCCTTCCATCATTTGCTTCACCGAAATAAGAAAGTTGATTTCATTGAACAATTCAATGAAAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTACAAATACTTGACGTTCGAAATGCTGAGCTGATAGAAGTTAGCAGAACTGACTTCATGACACCATCAGCATTCATATTTTTGTATGAGAATCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTGTGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAGACTGTAACACAAACAATATCTACATAACAAGCGATCAAGATCTGATCATCTCATATTGCAAGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATATCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAATAATGGTCCTCCTAAGGAAGAGGACTGCAGCAGTAGTGATTTGGGGAATTCCTCTCGAAGGAGAAGTGCGGTTGCTGAGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAGGAAACAGACACGGCCTCCTCCATGTCTGGTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

467

Amino Acids

53.46

Weight (kDa)

8.24

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 49 - 387 7.4e-191 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1328
AccII CGCG 1 cut(s) 1026
AciI CCGC 7 cut(s) 45, 181, 1024, 1026, 1169, 1298, 1326
AclWI GGATC 4 cut(s) 150, 212, 477, 1059
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 2 cut(s) 1018, 1276
AcuI CTGAAG 2 cut(s) 809, 1164
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 44, 1287
AgsI TTSAA 7 cut(s) 116, 259, 475, 730, 757, 839, 847
AjnI CCWGG 2 cut(s) 562, 706
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 8 cut(s) 112, 149, 468, 737, 856, 913, 1033, 1214
AluI AGCT 8 cut(s) 112, 149, 468, 737, 856, 913, 1033, 1214
Alw26I GTCTC 3 cut(s) 81, 197, 341
AlwI GGATC 4 cut(s) 150, 212, 477, 1059
AlwNI CAGNNNCTG 1 cut(s) 1142
AoxI GGCC 2 cut(s) 560, 1378
ApeKI GCWGC 3 cut(s) 287, 737, 1257
ApoI RAATTY 2 cut(s) 1018, 1276
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 5 cut(s) 393, 501, 794, 855, 1006
AspS9I GGNCC 1 cut(s) 1235
AsuHPI GGTGA 1 cut(s) 803
AsuII TTCGAA 1 cut(s) 901
AvaII GGWCC 1 cut(s) 1235
AxyI CCTNAGG 1 cut(s) 1242
BalI TGGCCA 1 cut(s) 562
BauI CACGAG 2 cut(s) 194, 291
BbsI GAAGAC 1 cut(s) 1323
BbvCI CCTCAGC 1 cut(s) 1305
BbvI GCAGC 3 cut(s) 274, 724, 1269
BccI CCATC 4 cut(s) 80, 770, 807, 955
BceAI ACGGC 1 cut(s) 1393
BciT130I CCWGG 2 cut(s) 564, 708
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 1116
BcoDI GTCTC 3 cut(s) 81, 197, 341
BfaI CTAG 3 cut(s) 33, 489, 860
BfmI CTRYAG 1 cut(s) 1255
BfuI GTATCC 1 cut(s) 221
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 3 cut(s) 288, 738, 1258
BlpI GCTNAGC 2 cut(s) 909, 1210
BlsI GCNGC 3 cut(s) 289, 739, 1259
Bme1390I CCNGG 2 cut(s) 564, 708
Bme18I GGWCC 1 cut(s) 1235
BmgT120I GGNCC 1 cut(s) 1235
BmiI GGNNCC 1 cut(s) 998
BmrFI CCNGG 2 cut(s) 564, 708
BmsI GCATC 2 cut(s) 341, 1075
BpiI GAAGAC 1 cut(s) 1323
Bpu10I CCTNAGC 1 cut(s) 1305
Bpu1102I GCTNAGC 2 cut(s) 909, 1210
Bpu14I TTCGAA 1 cut(s) 901
BpuEI CTTGAG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 707, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 1020, 1050, 1365, 1395
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1287
Bse1I ACTGG 1 cut(s) 1204
Bse21I CCTNAGG 1 cut(s) 1242
Bse8I GATNNNNATC 1 cut(s) 1110
BseBI CCWGG 2 cut(s) 564, 708
BseDI CCNNGG 2 cut(s) 707, 1024
BseGI GGATG 1 cut(s) 1066
BseJI GATNNNNATC 1 cut(s) 1110
BseLI CCNNNNNNNGG 2 cut(s) 44, 1287
BseMII CTCAG 4 cut(s) 497, 537, 900, 1296
BseNI ACTGG 1 cut(s) 1204
BseRI GAGGAG 1 cut(s) 1373
BseXI GCAGC 3 cut(s) 274, 724, 1269
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 2 cut(s) 562, 1380
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 44, 1287
BsmAI GTCTC 3 cut(s) 81, 197, 341
BsmBI CGTCTC 2 cut(s) 197, 341
BsmFI GGGAC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 2 cut(s) 562, 1380
Bso31I GGTCTC 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 901
Bsp1407I TGTACA 1 cut(s) 685
Bsp1720I GCTNAGC 2 cut(s) 909, 1210
BspACI CCGC 7 cut(s) 45, 181, 1024, 1026, 1169, 1298, 1326
BspANI GGCC 2 cut(s) 562, 1380
BspCNI CTCAG 4 cut(s) 498, 538, 901, 1297
BspFNI CGCG 1 cut(s) 1026
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 1 cut(s) 998
BspMAI CTGCAG 1 cut(s) 1259
BspPI GGATC 4 cut(s) 150, 212, 477, 1059
BspT104I TTCGAA 1 cut(s) 901
BspTNI GGTCTC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 1328
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 1 cut(s) 1204
BssECI CCNNGG 2 cut(s) 707, 1024
BssSI CACGAG 2 cut(s) 194, 291
Bst2BI CACGAG 2 cut(s) 194, 291
Bst2UI CCWGG 2 cut(s) 564, 708
Bst4CI ACNGT 4 cut(s) 39, 233, 439, 1076
Bst6I CTCTTC 6 cut(s) 49, 65, 136, 789, 1242, 1337
BstAUI TGTACA 1 cut(s) 685
BstBI TTCGAA 1 cut(s) 901
BstDEI CTNAG 8 cut(s) 66, 506, 546, 909, 1210, 1215, 1242, 1305
BstDSI CCRYGG 1 cut(s) 1024
BstENI CCTNNNNNAGG 1 cut(s) 1285
BstF5I GGATG 1 cut(s) 1066
BstFNI CGCG 1 cut(s) 1026
BstMAI GTCTC 3 cut(s) 81, 197, 341
BstNI CCWGG 2 cut(s) 564, 708
BstSCI CCNGG 2 cut(s) 562, 706
BstSFI CTRYAG 1 cut(s) 1255
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 3 cut(s) 274, 724, 1269
BstV2I GAAGAC 1 cut(s) 1323
BstX2I RGATCY 2 cut(s) 482, 1111
BstYI RGATCY 2 cut(s) 482, 1111
Bsu36I CCTNAGG 1 cut(s) 1242
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 2 cut(s) 562, 1380
BtgI CCRYGG 1 cut(s) 1024
BtsCI GGATG 1 cut(s) 1066
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 1157
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 1 cut(s) 939
Cfr13I GGNCC 1 cut(s) 1235
Cfr42I CCGCGG 1 cut(s) 1027
CseI GACGC 2 cut(s) 179, 530
Csp6I GTAC 1 cut(s) 686
CviAII CATG 4 cut(s) 215, 746, 940, 1388
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 8 cut(s) 66, 506, 546, 909, 1210, 1215, 1242, 1305
DraI TTTAAA 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 6 cut(s) 49, 65, 136, 789, 1242, 1337
EarI CTCTTC 6 cut(s) 49, 65, 136, 789, 1242, 1337
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 1235
Eco57I CTGAAG 2 cut(s) 809, 1164
Eco81I CCTNAGG 1 cut(s) 1242
EcoNI CCTNNNNNAGG 1 cut(s) 1285
EcoRI GAATTC 1 cut(s) 1276
EcoRII CCWGG 2 cut(s) 562, 706
EcoRV GATATC 1 cut(s) 672
Esp3I CGTCTC 2 cut(s) 197, 341
FaeI CATG 4 cut(s) 218, 749, 943, 1391
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 66
FatI CATG 4 cut(s) 214, 745, 939, 1387
FauI CCCGC 1 cut(s) 1162
FbaI TGATCA 1 cut(s) 1116
Fnu4HI GCNGC 3 cut(s) 288, 738, 1258
FokI GGATG 1 cut(s) 1053
Fsp4HI GCNGC 3 cut(s) 288, 738, 1258
FspBI CTAG 3 cut(s) 33, 489, 860
GluI GCNGC 3 cut(s) 288, 738, 1258
HaeIII GGCC 2 cut(s) 562, 1380
HgaI GACGC 2 cut(s) 179, 530
Hin1II CATG 4 cut(s) 218, 749, 943, 1391
HindIII AAGCTT 2 cut(s) 110, 854
HphI GGTGA 1 cut(s) 803
Hpy166II GTNNAC 2 cut(s) 448, 628
Hpy188I TCNGA 8 cut(s) 399, 457, 507, 547, 645, 676, 789, 1116
Hpy8I GTNNAC 2 cut(s) 448, 628
Hpy99I CGWCG 1 cut(s) 1343
HpyAV CCTTC 4 cut(s) 589, 805, 1154, 1281
HpyCH4III ACNGT 4 cut(s) 39, 233, 439, 1076
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 5 cut(s) 332, 480, 614, 1131, 1257
HpyF3I CTNAG 8 cut(s) 66, 506, 546, 909, 1210, 1215, 1242, 1305
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 4 cut(s) 218, 749, 943, 1391
Ksp22I TGATCA 1 cut(s) 1116
KspI CCGCGG 1 cut(s) 1027
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 274, 724, 1269
LweI GCATC 2 cut(s) 341, 1075
MaeI CTAG 3 cut(s) 33, 489, 860
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 4 cut(s) 293, 549, 1036, 1076
MbiI CCGCTC 1 cut(s) 1328
MflI RGATCY 2 cut(s) 482, 1111
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 6 cut(s) 460, 693, 842, 1018, 1276, 1399
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 3 cut(s) 551, 557, 751
Mox20I TGGCCA 1 cut(s) 562
MroXI GAANNNNTTC 5 cut(s) 393, 501, 794, 855, 1006
MscI TGGCCA 1 cut(s) 562
MseI TTAA 6 cut(s) 105, 371, 588, 696, 864, 1179
MslI CAYNNNNRTG 1 cut(s) 556
Msp20I TGGCCA 1 cut(s) 562
MspA1I CMGCKG 1 cut(s) 1026
MspR9I CCNGG 2 cut(s) 564, 708
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 2 cut(s) 564, 708
MvnI CGCG 1 cut(s) 1026
NlaIII CATG 4 cut(s) 218, 749, 943, 1391
NlaIV GGNNCC 1 cut(s) 998
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 293, 549, 1036
NspV TTCGAA 1 cut(s) 901
OliI CACNNNNGTG 1 cut(s) 556
PagI TCATGA 1 cut(s) 939
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 142
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 5 cut(s) 393, 501, 794, 855, 1006
PfeI GAWTC 8 cut(s) 18, 90, 177, 425, 492, 760, 880, 973
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 289, 739, 1259
PleI GAGTC 3 cut(s) 550, 556, 750
PpsI GAGTC 3 cut(s) 550, 556, 750
Psp6I CCWGG 2 cut(s) 562, 706
PspGI CCWGG 2 cut(s) 562, 706
PspN4I GGNNCC 1 cut(s) 998
PspPI GGNCC 1 cut(s) 1235
PstI CTGCAG 1 cut(s) 1259
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 2 cut(s) 482, 1111
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 556
SacII CCGCGG 1 cut(s) 1027
SaqAI TTAA 6 cut(s) 105, 371, 588, 696, 864, 1179
SatI GCNGC 3 cut(s) 288, 738, 1258
Sau96I GGNCC 1 cut(s) 1235
SchI GAGTC 3 cut(s) 551, 557, 751
ScrFI CCNGG 2 cut(s) 564, 708
SfaNI GCATC 2 cut(s) 341, 1075
SfcI CTRYAG 1 cut(s) 1255
Sfr303I CCGCGG 1 cut(s) 1027
SfuI TTCGAA 1 cut(s) 901
SgrBI CCGCGG 1 cut(s) 1027
SinI GGWCC 1 cut(s) 1235
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 6 cut(s) 460, 693, 842, 1018, 1276, 1399
SsiI CCGC 7 cut(s) 45, 181, 1024, 1026, 1169, 1298, 1326
SspMI CTAG 3 cut(s) 33, 489, 860
StyD4I CCNGG 2 cut(s) 562, 706
TaaI ACNGT 4 cut(s) 39, 233, 439, 1076
TaiI ACGT 1 cut(s) 900
TaqI TCGA 7 cut(s) 145, 495, 668, 771, 901, 1175, 1285
TasI AATT 6 cut(s) 460, 693, 842, 1018, 1276, 1399
TatI WGTACW 1 cut(s) 685
TfiI GAWTC 8 cut(s) 18, 90, 177, 425, 492, 760, 880, 973
Tru1I TTAA 6 cut(s) 105, 371, 588, 696, 864, 1179
Tru9I TTAA 6 cut(s) 105, 371, 588, 696, 864, 1179
TscAI CASTG 2 cut(s) 169, 1157
TseFI GTSAC 3 cut(s) 293, 549, 1036
TseI GCWGC 3 cut(s) 287, 737, 1257
Tsp45I GTSAC 3 cut(s) 293, 549, 1036
TspDTI ATGAA 6 cut(s) 402, 823, 864, 928, 946, 1368
TspGWI ACGGA 1 cut(s) 1363
TspRI CASTG 2 cut(s) 169, 1157
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 1235
XagI CCTNNNNNAGG 1 cut(s) 1285
XapI RAATTY 2 cut(s) 1018, 1276
XmnI GAANNNNTTC 5 cut(s) 393, 501, 794, 855, 1006
XspI CTAG 3 cut(s) 33, 489, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.